RNA id: TU142018


Basic Information

Item Value
RNA id TU142018
length 227
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G96060
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 23006279 ~ 23007463 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATAACACATCATTTTTTGTGCACTGTAGTATTATTTAATCACCCTGTTCATGCAATCTAGCCTCCagagagatggacagacagGACATCTGCCTCTCATGGAAAGTCTCGCACACAATAATTGCCTGACCTTTACAGCAGTGGCATTGTCTCATTAAGGCTGATGGATAATGATAGCGCCTCTGCCGAACGTGAACCTCGCTGATAATGAAACAACAGAGCAGCCCC

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
ko04217 Necroptosis
ko05322 Systemic lupus erythematosus
ko05034 Alcoholism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142008 lncRNA downstream 11710 22994037 ~ 22994569 (-) False G96053
TU142011 lncRNA downstream 11710 22994152 ~ 22994569 (-) False G96053
TU141986 lncRNA downstream 171867 22833829 ~ 22834412 (-) True G96044
TU141923 lncRNA downstream 346967 22658667 ~ 22659312 (-) True G95997
TU141921 lncRNA downstream 348375 22657670 ~ 22657904 (-) True G95995
TU142019 lncRNA upstream 9735 23017198 ~ 23029900 (-) True G96061
TU142099 lncRNA upstream 144742 23152205 ~ 23154495 (-) True G96108
TU142100 lncRNA upstream 144742 23152205 ~ 23154495 (-) False G96108
TU142128 lncRNA upstream 169339 23176802 ~ 23178096 (-) True G96117
TU142211 lncRNA upstream 431814 23439277 ~ 23443783 (-) False si:ch211-130h14.4
XM_043254796.1 mRNA downstream 186822 22802718 ~ 22819457 (-) True LOC122356266
XM_043254794.1 mRNA downstream 516956 22485289 ~ 22489323 (-) True LOC122356263
XM_043254793.1 mRNA downstream 558268 22435248 ~ 22448011 (-) False LOC122356262
XM_043254651.1 mRNA downstream 676987 22326705 ~ 22329292 (-) True ypel5
XM_043254650.1 mRNA downstream 682770 22317240 ~ 22323509 (-) True slc30a10
XM_043254876.1 mRNA upstream 127355 23134818 ~ 23136642 (-) True c1d
XM_043254869.1 mRNA upstream 149639 23157102 ~ 23167091 (-) False LOC122356317
XM_043254868.1 mRNA upstream 149639 23157102 ~ 23167091 (-) True LOC122356317
XM_043254878.1 mRNA upstream 160410 23167873 ~ 23168903 (-) False mrps6
XM_043254877.1 mRNA upstream 160410 23167873 ~ 23168902 (-) True mrps6
TU142010 other downstream 10680 22994663 ~ 22995599 (-) True G96053
TU141976 other downstream 183020 22821981 ~ 22823259 (-) True G96036
TU141977 other downstream 183765 22821981 ~ 22822514 (-) False G96036
TU141882 other downstream 562993 22379092 ~ 22443286 (-) False LOC122356262
TU141887 other downstream 567281 22371567 ~ 22438998 (-) True LOC122356262
XR_006252429.1 other upstream 1262851 24270314 ~ 24270449 (-) True LOC122357144
TU142459 other upstream 1335398 24342861 ~ 24344630 (-) False borcs7
TU142467 other upstream 1391660 24399123 ~ 24403644 (-) False fgf8a

Expression Profile