RNA id: TU142461



Basic Information


Item Value
RNA id TU142461
length 924
lncRNA type sense_over
GC content 0.38
exon number 4
gene id borcs7
representative True

Chromosome Information


Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 24342749 ~ 24344657 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


AATAGTTATGGCTTCCTCCGAGACGCAACCTCGCTTCGGTCAATCTGTTAAAGGTTTATTGTCTGATAAAGTCACTTCTTGCAGTGGGGATGTGATCGCTCTAACCCGTCAAGTGCTAAAAGGATCCAGGAGCCAAGAACTTCTCAGTCAGGCGGCGAGAAATATGGTGATTCAAGAAGATGCAATTCTGCATTCTGAAGATAGTCTACGGAAGATGTCTATTATAACAACCCACTTACAATATCATGTAGAACACTCCAAAAACCTGCAGGACCAGCTCAAGCACTTGATGAAATAACAGAAACCTGCTAATGTGCTGTGGATATTAGATTCTCtattttttcattgattttcttAAATAGTAGATCACATCACTTTTTGAGACTGCAGATGATGGCTTATTGCATGATggttgctatttaaaaaaatgcacagttcAACATCCTATTATTCTCTAACCTCTGGTTATCAATGGTTGTGAAAAACATGCATAAGACCTTTAAGTGAAGGCTTTTCTGTGGGAGATTGTTTCCAGTATtcatatttgtctttttctaaACGATAGTGCAATGTCACATTTGCTTTTAGACGTTTAGGTCTTGCGTAGTCATAATTTCCCAATTCACCGTACACCAAATgcacaaactgtattttcttgttaatttattgaTGTCTTTTTTCAAGTGTTGTTGTGCCAAATTTACttgaatatatttgtatgaaatGTTACGGAATTGTTTCTGCACGTTTTGCTAATTCATGTTTTAGGTCTAAGCTTTGAGCAACTTCATTAAATGTATGTGCAAAAGCAAATATATGAAAGTGGTCTTTGTTGAAAGTAACAGAGGGATACGAGACAAAGTTTATCCCGCATGCAATATCAGCAGCTCCTCTGCAAGGGCAAGCAGATGGATGTCCTAGACC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU142446 lncRNA downstream 60132 24274695 ~ 24282617 (-) True G96329
TU142371 lncRNA downstream 77832 24264668 ~ 24264917 (-) True G96303
TU142369 lncRNA downstream 91994 24250433 ~ 24250755 (-) True G96301
TU142361 lncRNA downstream 234931 24107433 ~ 24107818 (-) True G96295
TU142347 lncRNA downstream 272261 24070160 ~ 24070488 (-) True G96286
TU142546 lncRNA upstream 261500 24606130 ~ 24606376 (-) True G96411
TU142551 lncRNA upstream 285923 24630553 ~ 24674087 (-) True G96415
TU142552 lncRNA upstream 286795 24631425 ~ 24675946 (-) False G96415
XR_006252418.1 lncRNA upstream 308297 24652927 ~ 24664925 (-) True LOC122357044
TU142568 lncRNA upstream 310151 24654781 ~ 24664886 (-) False LOC122357044
XM_043255979.1 mRNA downstream 1297 24327865 ~ 24341452 (-) False cnnm2a
XM_043255978.1 mRNA downstream 1302 24327865 ~ 24341447 (-) True cnnm2a
XM_043254701.1 mRNA downstream 28803 24311027 ~ 24313946 (-) True inaa
XM_043254672.1 mRNA downstream 40334 24298935 ~ 24302415 (-) True LOC122356174
XM_043255748.1 mRNA downstream 284845 24043636 ~ 24057904 (-) True angpt2a
XM_043255382.1 mRNA upstream 6217 24350847 ~ 24361296 (-) False wbp1la
XM_043255383.1 mRNA upstream 6217 24350847 ~ 24358241 (-) True wbp1la
XM_043255809.1 mRNA upstream 23297 24367927 ~ 24393887 (-) True fbxw4
XM_043254715.1 mRNA upstream 54496 24399126 ~ 24404715 (-) True fgf8a
XM_043255913.1 mRNA upstream 85390 24430020 ~ 24441333 (-) True slc2a15a
XR_006252429.1 other downstream 72300 24270314 ~ 24270449 (-) True LOC122357144
TU142010 other downstream 1347150 22994663 ~ 22995599 (-) True G96053
TU141976 other downstream 1519490 22821981 ~ 22823259 (-) True G96036
TU141977 other downstream 1520235 22821981 ~ 22822514 (-) False G96036
TU141894 other downstream 1919880 22420936 ~ 22422869 (-) True G95972
TU142467 other upstream 54493 24399123 ~ 24403644 (-) False fgf8a

Expression Profile