RNA id: XR_006252418.1


Basic Information

Item Value
RNA id XR_006252418.1
length 3450
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id LOC122357044
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 24652927 ~ 24664925 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAGGAATCCGCATAGAAAAAGTCAGGAGTGACAGATCGCCCAGAGTGGGTGACAGCTTTACAGAGCGCTCAGACGACGACGGAGTCAAGCAGCCCCCCTTCTTACAGTTGCCATCTTACAAAGCTTTATTATAGGCTCTTAACACCGTGTCCACACTTGCAAAAGAGCGACACGGCGCTACAAAACTTCAAGCTAATCAGTATAACAGCAGTCGATTATAACGGTCGCTTTCTATTTTTGTCGCGTCGCGTGAGATTATTACGTAATTACGCACTTGTGGCGGTTCCCAAGAGCGTATACAAATATATAGATATCGCGCGTGTTCGCTTCGACCAGTAACTTTAAATCGCGCGACTTTCGTTAAGTTGAAATACATTACAAAGTTACCGATGACACGGCAAGTATCAGTCGGAGTGGAGAAGGCATCCTTTCTGGACATCTATACATTTTCTCACAAAGTATATTTCTGCTGTCAGCGCTGGAGGAAACGTCACGGGCGTGCACGCGAAGAAGTTTCAAAAGAAAGTTCGTCGGGCGGATCTTTCTTAGAAATGCATACTGATTGTAACTTAGGCTGGCACCAAGTCTGATGACTTTTCCCAGAAGATTCAGTCGAGACATAGAGAGAGGGGGCAGAAAGAGAGCTTTCTTGTCCAATAGGAGGCAAGGGGGCTGAAGAATGTGAAAAGCTCCCATTCAGGCCGGTTCACAGGGGCTGGGAGCGGCCACATCCTCAGGAGGGAGGAGGGGTTGCTGCTTTCAGGAGGGTGGGCTAGGGATCCTGGACAGGGGCCAGGAGCGATGCAGAGGCTCCTCGGATGACGCTGGTCCGTGGGAGCGTCCAGTGCCTCCGCCTCTCCTCTGTCCCTTAGGACACAGACTCTGGACCCCTTGCTTTCTATTTACTCGCACAAACAACCTCTCCCCACAGTCCTTCTACCCTCAGAGCAGAAGCAGCCAGTAGGCTGCAGGATGAGGAATGCGTCTCTATTAATAGAGCAGTTAGATTATCTCGAAGACTAATGACTGGCATGTCCAGATTCTTGAAAGTCATGGTAGTGACGTACTTTCATCCACCGGTCTTCATGATCTCATTTCTTATGATATTTTCTGAACGTAGTGGCtctctttttaaaacagtttatattCTACTTGCACAGTTTTATTCTCACTTATagttaataaaagcatttaaagcgACTGCAAAAAAAACGGTCTTGTTTACAGCTAAAATATCTAGAACTTAAATCAAGTAAaaattttgacttgttttcagaaaaaaactaataaaattgaAGCAAATTTTTCCtcagaaaaagctaaataattgtattttaaagatgatAATTTTTACTTACCCTGTTGGCAGATTATGTTTcttgtttcaagtaaaaacattgcattttgatttgttattttctgaaaacaaaaccgtaatgtttatttgtgtagAAAATCTTCCTTGActtaagaatataaataaaataaaaaaaaaaaaattatctggaAAAAATCTTGCTTGCAGTGATTTCAAATGCAAGTAaatacagaagtaaaaaaaaaaaattaaatgtttttacttatttatgttttatttatttaaaaataccagTTAGCACATTTAGTCaaactagaaataaaaaaaggtaaactcaaaactaaataaaactttaaaaacaaaaccatgtttaaaaacattaaaactaagaactaaaataaataggGGGGAAAAAACTCAATTCTAAATAATAGCCTGCTTAAGCaaagtgtttgtatttgtattaattgtaaTGCGATATTCGGGTATTCTTGGGTCAAGAAGTTCTTTCCTAAGCCATGGCCAGATCTGACTTGTGAGCCTATATGAGCTTCAGGGAGTGTAAACATCCTACACTCTCAGCTGGAGCCCAGCCTGAGGCCGGGAGTGGGATGTTTGCGCTCTCTGGCTCAGGAACGCCACTCTCACTGCGGCTGCGCTACGGAGGGGAGCAGCTTATTCAGAAAAAGTCGTCTAGATGTTCTAATCATCTACTGAGTAGACGGTAGACCTGAAATTACACCTGACCGCTTTGTTGGAACGTACACTGGAACTAGTCACCGGGGTAGGTAGCGATCACCTAACTATCTTTCTAAACGTATGTTCACTGTGTGAAAAGTATGTTAAAAAGCTCAGGATAAAAGAAGACGGCTACTTCCTGGACCTTGTGGATAGATTTGGAAGTGGATACGAGAGCTTTGTAACGCACACAGGAAGTGAACTCCATTGTGAGCTTGGAAAGGGCTCTGAGGGTGAGTGGCCTGTCATTAAGCTGCTCAGGGCAGACTGAACTCTAGGTCTCTTTGAAGCTTTCTGACCCCACAGGGTGGGACAACGTTGTTAAACTGCAAGCGCCCCCACCCAGACAGAGCTGCCGATGGAATTGCCTGAGAGGAAGTGACTATTTATACCCGCTAAGGAACAGAGAGGCACCCTTCCGATGGGCGTCTCTCCACTTGCTTCCTTTGACAAATACGTTAGGACTGCTCTCATGAAAGCTAACCCTAACTCCACAAAGACATGCACAACATCCAGTGCTCTCAATGGTATTTGTGTACACGCCTAACCGTGTTTTGGTTACCATTCTCTCCTGCAATGACCTTTACCCACTTTTGCTTGGTGATGTCATAGCTCAAGCATCTCTTATATGTGGCCACTAGGTGGAAGACTAGCTCCAGGAAATTCCTACTAGCTGAAAGACTGCTTGGGAAGCAAGTACACAAAAATTTCAATTATCCACTACAAAATTTTAAGCATCTTCTTATTAAGTATGTGCCTCCAATTCAACAACAccaaaccagaaaaaaaaattatatatatatatatatatatatatatatatatatatatatatatatatatatatataaaacaatcctgtaattatttttttaaatatatattttgctggtatttactttttttttctttcacaataTCTATGTGCAAAAGTAATCTCTGTTGTACTTTGCCTAAAACCAAAGTGAAAAGAGTTCAGTCACATTTTCACCTCAAAGTGCGTCTCCCTGCTCTGTGTTGGAAATTAAAAAACAGAGACGTTTCAGTCAACTGACAGCCTCTGCTCAAGCTTTTCCCGTCAACTGGAACAATCAAAACTGAAGTATGACAACAAAAGCATCACTCATCATTAGTTTGACTATTTTCCTTCTTTGAACTGACTAATTCTTCTTATAATGCCTTATAAGGCCTTTTCATCTAACTGCATGAGAGCTACTGAATTTACACCAAGTTCCtttcaaatgtttcaaacaATAATCTTGCCCCACAGGTGGCACAGCAACAGGAAGAAAGAAATTGGTATGTATGTGCGTTATGTGTAAAGTAAAAACATCAGGAGATTGTTCTGTGAATGTTGTTTCTTCTTTGCTTAATAAACCATAAACAGATGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142546 lncRNA downstream 46551 24606130 ~ 24606376 (-) True G96411
TU142461 lncRNA downstream 308297 24342749 ~ 24344630 (-) True borcs7
TU142460 lncRNA downstream 308297 24342861 ~ 24344630 (-) False borcs7
TU142446 lncRNA downstream 370310 24274695 ~ 24282617 (-) True G96329
TU142371 lncRNA downstream 388010 24264668 ~ 24264917 (-) True G96303
TU142578 lncRNA upstream 45819 24710744 ~ 24713458 (-) True G96435
TU142582 lncRNA upstream 49294 24714219 ~ 24716962 (-) True G96436
XM_043254739.1 mRNA downstream 32494 24603688 ~ 24620433 (-) True b3gat2
XM_043255913.1 mRNA downstream 211594 24430020 ~ 24441333 (-) True slc2a15a
XM_043254715.1 mRNA downstream 248212 24399126 ~ 24404715 (-) True fgf8a
XM_043255809.1 mRNA downstream 259040 24367927 ~ 24393887 (-) True fbxw4
XM_043255383.1 mRNA downstream 294686 24350847 ~ 24358241 (-) True wbp1la
XM_043254555.1 mRNA upstream 2380 24667305 ~ 24672334 (-) False asrgl1
XM_043254554.1 mRNA upstream 2380 24667305 ~ 24672195 (-) True asrgl1
XM_043254579.1 mRNA upstream 177345 24842270 ~ 24845635 (-) True cgasa
XM_043255511.1 mRNA upstream 181524 24846449 ~ 24851300 (-) True eef1a1a
XM_043255512.1 mRNA upstream 181524 24846449 ~ 24851238 (-) False eef1a1a
TU142467 other downstream 249283 24399123 ~ 24403644 (-) False fgf8a
TU142459 other downstream 308297 24342861 ~ 24344630 (-) False borcs7
XR_006252429.1 other downstream 382478 24270314 ~ 24270449 (-) True LOC122357144
TU142010 other downstream 1657328 22994663 ~ 22995599 (-) True G96053
TU141977 other downstream 1830413 22821981 ~ 22822514 (-) False G96036

Expression Profile