RNA id: XR_006252265.1


Basic Information

Item Value
RNA id XR_006252265.1
length 4488
RNA type transcript
GC content 0.48
exon number 19
gene id LOC122356061
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 4672966 ~ 4689168 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCAGACCGCTCGATGCTCGAGACTGGAGCGGCGCGCTTCTCAATcatccacaaacaaacacactgacaGGTGTGGCCAACCAGTGAAGGACATTTAAAAGCCCAAAGGCCTCTCTATGGTTCCTAGTCGCTCTCTGATCATGGGGAACGGTTCGATCAAAGCCCCTCGGCTGGAGGAGACCTGCCTGGCCTCCGGTATAAAAGAGGCCCCTGTCTGGGAGTCCGTGGAGCCCCTGAAGATGAGGATCGCCCATCTGGAGGAGGAGCTGGTGCGGAGGGACCAGGAGCTCCGCGCTCAGGAGAAGCGCTTGCAAAGCCTTCAGAGGGAACTGGAGGCAAAAGTGTGCCAGATCGACAAGCTCCAGGACGCCATCGGGTATAACAGTCTCGGGCGCTCGCCGCCGGCGCCTCCGAGGCACAGCCGCAGACTGCTGAGCGTCATCAACCAGGGCTCCACGCGCTTCCACAGGGTGGCTGTGGAGGTGCATCGACGCCTTAAGGCCAAGGAGGGCGTTTCAGCCGAACCCACATCGAGGCACTTCTGCCACGACCACAGGGTCCATCACGTCTCCACGGAGAGACAGCGCATCCGCAAAGACTCCGGCACTAAGAAACTGATCAATGAAGCCATCATGAACAATGATTTTCTGAAGAAGCTGGAGCCTCAGCACACTCGAGAGATGGTGGACTGCATGTACGAGAAAGTCTACAGCGCCGGTCAGCTGGTTATTCAGGAGGGAGAGCCGGGGAACTACCTCTACGTGCTCGCCGAGGGTTTATTAGAGGTCATGCAAAATGGAAAGCTCCTGGGTCAGATGCGGCCTGGGACGGCTTTTGGAGAGCTGGCCATTCTCTATAACTGTAAAAGAACAGCCACGgtcaaagCTGTGACTCAGTCCCACATCTGGGCCCTGGACCGGCAGACGTTCCAGACCATCATGATGAGATCCACTCAGGCCAGACACGAGGAGTACTTCAGCTTCCTGCGCAGTGTGTCGCTATTGAAAGATTTGCCAGAGGAGAAACTTGCCAAAATCATTGACTGTCTTGAAGTTGAATATTTTGACAAAGGGGAGTACATCATTCGTGAGGGCGAGGAAGGAAACACATTCTTCATCATAGCTAAAGGAGAGGTGTTTGTAACACAGACCACAGAAGGCTTTTCCGAACCACAGGAGATTAAGACTCTTGGTGTGGGTGATTACTTCGGGGAAAAGGCTCTCATAAGCGAGGATGTCCGCTCAGCTAATATCATTGCAAAGGAAAATGACACGCAGTGCTTGGTGGTGGATAGAGATAACTTTAATCAGATGGTGGGGACGTACGAGGAGCTGCAGGCGTATCTGAGGGAGTACGTGGAGCAGCTCTCTCTGAGCGACGAGAGGAGGAACGCAGCGCCTCAGTCGCCCCTTCACGAGCGCTCTCCAGAAGCAACGGAGCTCCGGAGGCTGAAGGAGAAGGCCGTGGCTTTGTCCAGTAAATCCTTCCTGAAAGAACTGCAAGTAGTGGCCACGCTAGGCATGGGAGGCTTCGGACGAGTGGAGCTGGTCAAGCTTAAAAAATCAGAAGATGCAGCGTTCGCTTTAAAGTGTATTAAGAAAAAGCACATTGTGGACACCAGGCAGCAGGAGCACATCTATTCGGAAAAGGACATCCTCCAACAGACCAATTCAAACTTTGTTGTCAGgttgTTCCGCACGTTTCGGGATGATAAGTATGTTTACATGCTGCTTGAGGTTTGCCTGGGAGGAGAGCTGTGGAGCGTGTTGAGGGACATGAGTTGTTTCGATGAGCCCACTGCCCGCTTCTGTACCGGATGCGTGCTGGAAGCTTTCGACTACCTGCACTGCAAAGGCATCGTGTACCGAGACCTAAAGCCGGAGAATCTTCTTCTGGATGGGGAAGGCTATGTCAAAATGACTGATTTTGGCTTTGCCAAAAAGATTGGACTGGGTAAGAAGACTTGGACGTTCTGTGGCACTCCTGAATATGTGGCTCCTGAGGTCATCATGAATAAGGGTCATGACTTTGGAGCGGACTGCTGGTCCTTGGGCATCCTCATCTTTGAGCTCCTGATTGGCAGCCCTCCATTCGCAGGCTCCGATCCGATCAGGATCTACACTATGGTCCTTCACGGAATAGAGAAGGTGGACTTTCCCAAGAGGATCAGCAAGCGGCCGGAGGATCTCATACGCAGACTTTGCAAGCTCAATCCAGCGGAACGACTCGGGAATAAAAAGAATGGAATCATTGACATCAAAAACACAACCGCACCTGGGAGTACACTGAAGCGCTGATCCATGTGTCTGGCCACAGGTAGTGTATTGTTGAGTCTGTTTTGCTGCAGGCCTGTCTGTCCCCTCCTTTGTATGTCACAGCACAATGGGTAGCTGAGCCAGCCCGCCAGATCAGCCTCCCCTCATTCACAGGGGGAGTAATTAGTGGCCAAAACGAGAGGCGCAGCTGCTGCCATCTTCCACAGAGCAGTGAAGCCGCAGACAGCGAGATGAAGCGCTGGGCCCGTCCTTTAACAGCCACGGGACCGACAGAGCCTAACATGCGTGTGCGCTGATGATGCCCAGCGTTCAGATGACAATCAGCTGGGAGTTATCACGCTTATTACTTTACTAGCGTTCTGTGTTTCGCTAGACGCCGTTGTTTTTATACTCATTATGCTTGAGCGTCCTTATCACGCAGGCTGAGTGATTTAGGTAACATGCACACAAAGCGCACAAGAGCTCAACATCATTTGTATTATGTCGCCAAATTATGTTCAGAGCATTATGCAAACGAAGGCGCAAGCTCTTGATACGGGCATGAATATGCATGTCCAGGTAACAATGTGTCGTCAGATGAGTGAGATCCGAGATGTACACTATCGTATGTTTGGGGGTtggattttttattatattaatgcttTACGTCACGGAGGTTGCACGGAATCGATCAAAAGCGACAGCGGACGtatttaaatacagagattactataattaaaaaaataatatgtctGATTTGATCAGAAACATTAGACAGCACTGCTGTTTTCAGTATTGGTAATAGTAGGACATGGGGGGTGATCAGCATGTTATAATGaattctgaagggtcatgtgacactttcattttaaaatatgttcataaAGATAACAgttttttcaaattgtaataacatttgacaatattactgctttcgctgtattttttatcaagtaAGTGCATCGCTGATGAGCAttagagacaaaaaaaatacaaatcttatCATGATTCCAGATATCGAGGTTTTGAGCTCTTAAGAGCTGAGCTCCAGGGGCCGGGGGCTCCGAGGGACTCCTGCCCGGCTGGGTGCTTCCCTCTTGGACGGGGACGGTGGTGcgaaggccctggaggaatctGGGATCTGAAAAAAATcagcttaggttttgaacacttaaaatcTGAGCTCCATGGGCCTTCTCGAGCGCAGGCAAGCCCTCTCAAACTAAAATAACTCTGTCCATGAAAACATAAACTGTCTCCCCAGTCCACAAAAATCTTCTCCGTTTGTACTTTTGCAAAGAGGATATTATTAAAGACTAGTTGAAAAATGGCTAAGCCCTCTGCTGGTGAATAAGCTCTCATTTCACATGTGAGGAGAGCGCTTATATTTGTGTCTTACATACGTgagcataaaaacataaaaacgcATGCAACGCTTTCTGACAATAAAAGGGGAGGATGTGCTATACGACCCTTTAAAACATGTCCTCGCTGGAAGGATAGAGATGGAGGAGGCTGAAGCCGTGAATCGCTCTGCTGTGGAGGTTTACTTTGTTTTGTCTGCAGGTGGTTTCAAGGCTTTAACTGGGAAGGACTGAGGCGGCGCAGGCTGTCGTCTCCTCTGAGGAGAGAGCTCGCGGGACCCCTGGATCACAGTCACTTCGACATGTTCCCCCCTGAGCTTGAAGAACCCCCAGATGAATTCTCCGGCTGGGATAAAGATTTCTGAAAGAAGAGCCGATATAAAGCGGCAGCGTCTGGAGGAGACGTCTCAGCATTACCTCAGTGTGCTTTCTGAAGCACTGTGCCACTGACTGACTTGTTCGGATGGACAGGAATCGCCACGCTTTTAAGTTAAAGAAGACAAAGTCGGATGgttatttcagtgatttttcATTATAAGTGGATCAATAAATCACTGATGCCTTAAATCCGTCTATTGAATCTTAAGCACGTCTTTAATGTGGATGAATCGcgttcatttttacattttctcagcTTTTATACCCTCTAAGTGTTTTGTGTTAACTCAATACTGACGCTTATATCGTTACGTAATCGGCCTTTTCGGTCTTTTTCATTTGCTTAAGAATCGGATATTGGCCGAAAATATGATTTCAAGTCAataaaaatgccaataaaaaatatggataaaaaaaaaatcaaacaataaacaaagccGATGTTGAAATTATTGTTCATAACGcgaatttaataacatttaatgaaCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134419 lncRNA downstream 50162 4549111 ~ 4622804 (-) True G90786
TU134415 lncRNA downstream 88005 4560776 ~ 4584961 (-) False G90785
TU134416 lncRNA downstream 88005 4560776 ~ 4584961 (-) True G90785
TU134435 lncRNA downstream 102208 4545021 ~ 4570758 (-) True G90802
TU134375 lncRNA downstream 259195 4390355 ~ 4413771 (-) True G90750
TU134496 lncRNA upstream 1717 4690885 ~ 4698612 (-) True col13a1
TU134506 lncRNA upstream 61264 4750432 ~ 4750968 (-) True G90842
TU134515 lncRNA upstream 140583 4829751 ~ 4833144 (-) True G90846
TU134800 lncRNA upstream 269215 4958383 ~ 4959411 (-) True G91022
TU134803 lncRNA upstream 275434 4964602 ~ 4964959 (-) True G91025
XM_043255633.1 mRNA downstream 716 4626388 ~ 4672250 (-) False hells
XM_043255632.1 mRNA downstream 39318 4626391 ~ 4633648 (-) True hells
XM_043255642.1 mRNA downstream 61858 4607224 ~ 4611108 (-) True galm
XM_043255442.1 mRNA downstream 201016 4462022 ~ 4471950 (-) True socs5b
XM_043255262.1 mRNA downstream 226678 4441892 ~ 4446288 (-) True prop1
XM_043254953.1 mRNA upstream 1714 4690882 ~ 4779722 (-) False col13a1
XM_043254950.1 mRNA upstream 1714 4690882 ~ 4779722 (-) False col13a1
XM_043254949.1 mRNA upstream 1714 4690882 ~ 4779722 (-) False col13a1
XM_043254956.1 mRNA upstream 1714 4690882 ~ 4779720 (-) False col13a1
XM_043254955.1 mRNA upstream 5364 4694532 ~ 4779722 (-) False col13a1
TU133931 other downstream 1651104 2990418 ~ 3021862 (-) True G90445
TU133704 other downstream 2045809 2626328 ~ 2627157 (-) True G90311
TU133689 other downstream 2087635 2584196 ~ 2585331 (-) True G90304
TU133469 other downstream 2427888 2151837 ~ 2245078 (-) True G90161
TU133318 other downstream 2981031 1684449 ~ 1691935 (-) True LOC122356758
TU135397 other upstream 1536093 6225261 ~ 6225733 (-) False LOC122356805
TU135441 other upstream 1669033 6358201 ~ 6390715 (-) False sdccag8
unassigned_transcript_1925 other upstream 2441977 7131145 ~ 7131215 (-) True trnag-gcc_67
unassigned_transcript_1927 other upstream 2445904 7135072 ~ 7135142 (-) True trnag-gcc_69
TU135889 other upstream 3354397 8043565 ~ 8047901 (-) True G91775

Expression Profile