RNA id: XM_043254519.1


Basic Information

Item Value
RNA id XM_043254519.1
length 4177
RNA type mRNA
GC content 0.48
exon number 19
gene id LOC122356067
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 3022616 ~ 3050667 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTGGTGAAGGGAGGGCGAGGTAACAGTGAGAGCGAGAGCCTGAGTGCAAGGGAAGGCTTCTCACGGAGGCACGGCTAAAGACAACATTTGCAAAATGccgaataaaactaaaaaagagaAGGAACCGACCAAATCTGCAAAAAGCAGCACGAAAAACAGCAATGCCGGTGGCGGAAAGGATGCTGGGACTGAAAATTCAGAAGAGGCCCAGCAGACAGCCAGTAAGCGTCCGAGCAACAGCACTCCACCTCCCACTCAACTCAACAAAATTAAGTACTCAGGTGGGCCTCAGATTGTAAAGAAGGAGCGTCGACAGAGTTCGTCACGATTCAACCTCAGCAAGAACCGCGAACTGCAGAAGCTTCCCGCCCTCAAAGATGCCCCACCCATTGATCGAGAAGAACTGTTTGTCCAGAAACTACGGCAGTGCTGTGTGCTTTTCGACTTTGTGACCGATCCACTAAGCGATCTCAAGTACAAAGAGGTGAAGCGAGCCGGCCTCAATGAAATGGTGGAGTACATCACACACAACCGCGACGTGGTCACAGAGTCCATCTACCCTGAAGCTGTCATCATGTTTTCTGTGAACTTGTTCAGGACTCTGCCGCCCTCTTCCAACCCCACGGGAGCCGAGTTTGACCCAGAGGAGGACGAACCCACTCTAGAGGCAGCTTGGCCTCACCTGCAGCTGGTGTATGAATTCTTCTTAAGATTCCTGGAGTCACCCGACTTCCAGCCCAACATTGCCAAAAAATACATCGACCAAAAGTTTGTACTCTCGCTTCTGGAGCTTTTCGACAGCGAAGACCCCCGAGAGCGGGACTTCCTGAAAACCATCCTGCACCGCATCTACGGAAAGTTCCTGGGCCTGAGAGCCTACATTCGCCGGCAGATCAACAATATATTCTACAGGTTTATATACGAGACGGAGCATCACAATGGGATTGCAGAGCTTTTAGAAATCTTAGGAAGCATAATTAATGGCTTTGCCCTGCCACTGAAAGAGGAGCACAAAATGTTCCTCATCAGAGTGCTACTGCCTTTACACAAAGTCAAGTCTCTCAGCGTCTATCACCCACAGCTGGCCTACTGTGTGGTGCAGTTTTTGGAAAAGGACAGCAGCCTCACTGAACCTGTGATTATGGGCCTGCTAAAGTTCTGGCCCAAGACCCACAGTCCTAAGGAAGTGATGTTTCTGAATGAGCTGGAGGAAATCTTGGATGTCATCGAGCCCTCAGAATTTGTTAAAGTCATGGAGCCTCTCTTTAGACAGCTGGCCAAGTGTGTATCGAGTCCGCACTTCCAGGTTGCTGAAAGAGCATTGTATTACTGGAACAATGAGTACATCATGAGCCTGATCAGTGACAATGCCGCTAAGATCCTTCCCATCATGTTTCCCGCTCTCTACAAGAACTCCAAGAGCCACTGGAACAAGACAATCCACGGGCTTATCTACAATGCTCTGAAGCTCTTTATGGAGATGAACCAGAAGCTGTTTGATGACTGCACTCAGCAGTACAAAGCCGAGAAGCAGAAAGAGAAGTACAAACTAAAGGAGCGGGAAGAAATGTGGCATAAAATTGAGGAGCTGGCAAAACAGAACCCTCAGAGTACAAAGATTCAGCTGCGGCCCGGTCTGGCCCAAGAAGAGTATATGATGTATAACGAAGGAGGGATGCCCCTGTACTCGATGGAGACGGAGACCCCTACAGTCGAGGACATCCAGCTGCTGAAGAAGACCGTGGAATCAGAAGCTTCACAGGGATTGAAAGAAATCAAGAAAGACAAGGTTTTGATGAGGCGAAAGTCTGAGCTGCCGCAGGACGTGTATACTATAAAAGCCCTGGAAGCTCAGCGAGCGGAGGAGTACCTGACGGCCAACCAGGAAGCCCTCTGACCGGGGAGCACCGCCATCCTCCACCGCGCCTAAACTGTTCCTCTCGTCTTGGTCCAAACTCGTCGCCTGCTGTAACCCACCTCTCAATCCCTCTGCCTCTGTCCATACTCTCTTCCTCCCTCGCTGTTGGAGAGCCCCGTCTGCAAACATCCAGCCCGCAGAGCAGTGGAGAGCTCCCATGTGCGCACAAGCACTTCCTCACAGATCCATAGCTGCTGATCCTCGCATCCAACAGAAGCTGTTAGAAAGCAGTGTGGGTTACAAATAATCAAAGTATGCTTTTTGTGGTCTGTTTTTCTCTCCACACTCCGCTTTGTTTTGCCCACTTTATGCTGTCTCCATTCGTCCGCATGTTCCCTATCCCCTTTTATTTTTACCACTGCTTGAGAGCTTCTCCTGTATTCCAATCACTGCCTCTGTAAAAACCTGTTTGCAACGAAGGAGCCACGATTAACTAAACGAATCGCGTTACTCGAGATAAACGAAGACCTCAATGCAGACGGTGTGTTGGATTTTCCCGTGGGTTCAGCGTAGAGCCAAATGAAGCGGTCAGGGCTGTTCTTGATGTCAAACTTACACGGAGAAACTTGTTCCTTAGTAAGAAGCTTTATGAATTAGACACGCAAATTGGAGATTTGCTAATCAATTTCAGACGCTTTGCTAGGTATACACATGAAAGTGTTTCTCCATAGTGGCCTGGTGCTGTAAATGCTTCAGGTAGTCGTCTGAAGAAGTCATTTTTGAGGTCATGGCCACGTATTAAGAGCCAGAGACTGAAGAGTTCCCGAATCCGTTTGCTGTTTTCCTAGTGACCGTGTTAATGATTGtcaagaacaaacaaacaaacaaaaaaaaaaaaggggagaTTTGTGTAAGCAATCATCTCTATATACACCACCAGCAGAGCGCTTGAtgaaaatgctgtaaaagtagTAGCGGAAAAGACGATGTGCTCGATGTGCAGCAACGGCCTTTCGGTCCAAACCGTCTTTTCGTTTTAAGATACCTCTTTAACAGAACGAAATGTGTTTTTTCGCCACCTAGCTTCGGTAAGGTGTCTTGTTTTTTGCTTCGTAGGTTTCTGTGACGTATGAGAGCCAGAAAAGAACGAATCCGCCAAGCCTTTAAAAAAGGAGACCGTTCGAGATCGAGAACTACAGTCCTGTCCGAAATTGTACGTCATATTttgaccgtttttttttttttttttttcggcttCAAAGCGCCtaagcagtatttttttttcaggaattaaGAGTCGTCCGGAGAACGTGCACTGGTCTAGTGTACGATCAAGCGCTATACAATCCTCCTGATAGGACTATATACTTAAAGAGAAAAGATACTCGCTTTCCTGTCTAGGCTTAATATATGGAAAACCGACAGCCTGCAGTTGCCGTCGCAAATacgtgtgtactgtatattgtcATGTAAATTGCTTATGATTGCGCCCTAGCCCCGCCCACCCCCCACCCTCACCCTTCAGTACTCCCTCTTCCTGAGttcatcttttctttcattctgtttGCTTGTACGACTCCATTCTGATGCATGATGTCCCCTCTCTGTTGTAAAGATCTGTCTCGTGAAGTGTCACTTTGATCATTCCAATAGCGAGGGAACATTTACTCCTCCTACAGGCTGCTGGACAACGCAAAACGTCATCGCTATCCGACGCACAGCCCAAAAAAGGCCTCGCTGTAATTCATCCACTCGCCGCGCATTCAAGCTGCTACACTTCTCCCATCGCTCCAAACGCGCATACGTTTAGATTCGTGCCGTCACAGCCTGTTTAGTACGCGGCGCAGAGGTGAAGCCTTGAAATCATTCGATGTTTGAAGTGTTGTAATGTCACCTCGGGCCTACCGGCGTACGGGAATGACTCGTCCGCGCAATCAAGAGCATGAATTGCCAACCTTGTTGCCTCTAAACAATAGACCAAAACATTCCAGAAACAATCAGAGGCAACTTCACTCTTGAACGCAGCATGCTTCCTTTCTAAATGCCTTTTGACAGGCGGATGGGGCCGGTGTTCAGCTTGTCCGGCAGCAACAAGAACCCGAGGGAAACTAAGAAAGTATGGGTCTCTCCACACTCACCCGTCCCTTTTCCTCCTCCCCCAGTCCTCCTTCCCAAGTCTGACACTAATCTTAAGCTGCTTTCCAGGTCATATGTACATATGTTGTACTTTAATTAGGTTGAGCATTACATAGTATGAAAGTCATATTTTGTACAGATGTTCATGTATgtacagaacaaaaataaagaaacacaaaaga

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0000159 protein phosphatase type 2A complex cellular_component

KEGG:

id description
K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252271.1 lncRNA upstream 1725 3020068 ~ 3020891 (+) True LOC122356074
TU133791 lncRNA upstream 5396 3016794 ~ 3017220 (+) True G90339
TU133785 lncRNA upstream 11975 2982743 ~ 3010641 (+) False LOC122356072
TU133713 lncRNA upstream 68363 2857325 ~ 2954253 (+) False G90319
XR_006252297.1 lncRNA upstream 140930 2865807 ~ 2881686 (+) True LOC122356240
TU133809 lncRNA downstream 1315 3051982 ~ 3278260 (+) False LOC122356070
TU133743 lncRNA downstream 149180 3199847 ~ 3201487 (+) True G90326
XR_006252296.1 lncRNA downstream 195596 3246263 ~ 3247132 (+) True LOC122356226
TU133829 lncRNA downstream 264996 3315663 ~ 3315908 (+) True G90365
TU133839 lncRNA downstream 351297 3401964 ~ 3403754 (+) True G90373
XM_043254525.1 mRNA upstream 27828 2982703 ~ 2994788 (+) True LOC122356072
XM_043254845.1 mRNA upstream 43367 2971146 ~ 2979249 (+) True LOC122356304
XM_043255830.1 mRNA upstream 51469 2957658 ~ 2971147 (+) True LOC122356776
XM_043256388.1 mRNA upstream 70854 2916892 ~ 2951762 (+) True LOC122357122
XM_043254766.1 mRNA upstream 161949 2852563 ~ 2860667 (+) True LOC122356236
XM_043254522.1 mRNA downstream 2839 3053506 ~ 3055298 (+) True LOC122356070
XM_043255841.1 mRNA downstream 156744 3207411 ~ 3209753 (+) True LOC122356782
XM_043255842.1 mRNA downstream 159125 3209792 ~ 3227749 (+) True LOC122356783
XM_043255847.1 mRNA downstream 178446 3229113 ~ 3231423 (+) True LOC122356787
XM_043255849.1 mRNA downstream 184376 3235043 ~ 3246109 (+) True znf318
TU133786 other upstream 38007 2982559 ~ 2984609 (+) False LOC122356072
TU133784 other upstream 38007 2982743 ~ 2984609 (+) False LOC122356072
TU133574 other upstream 552235 2469945 ~ 2470381 (+) True G90230
TU133396 other upstream 841877 2176153 ~ 2180739 (+) False cutc
XR_006252324.1 other upstream 856588 2153422 ~ 2166028 (+) True tp53bp2a
TU133808 other downstream 1315 3051982 ~ 3055118 (+) False LOC122356070
TU133807 other downstream 2907 3053574 ~ 3055118 (+) False LOC122356070
TU133814 other downstream 124068 3174735 ~ 3285406 (+) True G90350
TU133813 other downstream 128760 3179427 ~ 3179933 (+) True G90349
TU133737 other downstream 137159 3187826 ~ 3189681 (+) False G90324

Expression Profile