RNA id: XM_043254523.1


Basic Information

Item Value
RNA id XM_043254523.1
length 1248
RNA type mRNA
GC content 0.51
exon number 4
gene id LOC122356071
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 3050548 ~ 3052828 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGCGTCGACGTGTCGTGACGTAATCAATGCGCAGTTTTTCTTCTGCGCAGTACCGGAAGCGAATAACAGCTCTCGGATACAGATGCTAAAAAACATTTGGATAAAAGAGCTCCACAGAAGAAACAGTTGTTGAATGGAAGTGGTGAGGGCCAGAGAGATGGGCCCCGAGAGAATCTTACCGAACCCCGAGGAGGATGCGCTGCAGGAGCGGCCCTCAGACACCGCGGCGCAGGAGGAGTGGAGCGGGGAGGACatagaggaggaggaggaggaggaggaaggaggCGCCGGAGACGAGGACAGTGCCGGGTACTATTACCAGCCTCTCAATCAAGACCCAGACGGGATGAACGGCTCTCACACGGAGCCCGCGGACGAGGGAACCACCGCggagcagctgcaggacgtccAGGACAGAATAGAGGCCATGGGTCTGTTCCTGCCCCAGCCTCCTCCTCCTGACAGCGACGAAGAGGAGGATCCCGAAGGAGCTGCTGCTCGTAGAAGTTTCGCGTCCATTCCCATGGATGCAGATCACGTTGAACTGGTGAAAAGGACCATGGCTGCAGTAAATTTGCCGACACTAGGAATCCCTGCCTGGGCCCAGGAGATCTCTGACGACCAGTGGAAGGACATGGTCCAGCAGACGCTTCAGTCCAGACAGAGCTCGGCAGGCCTGAGACTGGACCGCAAGTGAAACCATTACAAGAGCCTCATCTCACCTGCTGCAGGAACATGAAACAGAGCTTCTGACATCTCAAATCGAAAGGCATTCCTCCCTTTAGGTGTGGTTTACACAAACTGTGGACTGAAATTCATTAATGGCTCGCCTTGTAATTGCTTTGAACTGATAGACAGCCGGTGTCCAGTTGATGCGGTTACCGAGTAGGCAAAAAAGACGCTCCTGAAAACCTCCCAAATGTTTTTCAACCCAGCTGTATTGACGCAGTGTGTTCTTTGTGAGGATTTAGCAATTTGTCGGTTGCCTTTGTATGACAGTATAGACATGTAATGGTGCATCTCAGTAATACTCGCATCTCCATTAACCCGAATGTTGATACCCGTGCAATGAGTGATTGATCCTTTATATACCGCACACGGCTCGAGCAACACAAATGGGCGTCgcatcttttgtgtttctttatttttgttctgtacATACATGAACATCTGTACAAAATATGACTTTCATACTATGTAATGCTCAACCTAATTAAAGTACAACATATGTACATATGACCTGGAAA

Function

GO:

id name namespace
GO:0007283 spermatogenesis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133922 lncRNA downstream 36812 2985936 ~ 3013736 (-) True G90441
TU133916 lncRNA downstream 72852 2974996 ~ 2977696 (-) True G90437
TU133877 lncRNA downstream 153080 2897038 ~ 2897468 (-) True G90408
TU133705 lncRNA downstream 425275 2624904 ~ 2625273 (-) True G90312
TU133683 lncRNA downstream 426639 2621236 ~ 2623909 (-) True G90300
TU133952 lncRNA upstream 123790 3176618 ~ 3178560 (-) True G90454
TU133957 lncRNA upstream 139163 3191991 ~ 3193302 (-) True G90459
TU133949 lncRNA upstream 230351 3283179 ~ 3285406 (-) False dlk2
TU133983 lncRNA upstream 317337 3370165 ~ 3401066 (-) True G90482
TU134012 lncRNA upstream 369925 3422753 ~ 3433474 (-) True timm23b
XM_043256387.1 mRNA downstream 95096 2953239 ~ 2955452 (-) True tuba4l
XM_043254769.1 mRNA downstream 137032 2893707 ~ 2913516 (-) False LOC122356237
XM_043254768.1 mRNA downstream 137034 2891387 ~ 2913514 (-) True LOC122356237
XM_043254772.1 mRNA downstream 184723 2862008 ~ 2865825 (-) True LOC122356239
XM_043254771.1 mRNA downstream 197164 2848173 ~ 2853384 (-) False si:zfos-1056e6.1
XM_043254520.1 mRNA upstream 3920 3056748 ~ 3072394 (-) True LOC122356068
XM_043255950.1 mRNA upstream 223340 3276168 ~ 3278381 (-) True mea1
XM_043255951.1 mRNA upstream 228509 3281337 ~ 3298549 (-) True dlk2
XM_043254626.1 mRNA upstream 349109 3401937 ~ 3409645 (-) False lrrc73
XM_043254624.1 mRNA upstream 349109 3401937 ~ 3409641 (-) True lrrc73
TU133931 other downstream 28686 2990418 ~ 3021862 (-) True G90445
TU133704 other downstream 423391 2626328 ~ 2627157 (-) True G90311
TU133689 other downstream 465217 2584196 ~ 2585331 (-) True G90304
TU133469 other downstream 805470 2151837 ~ 2245078 (-) True G90161
TU133318 other downstream 1358613 1684449 ~ 1691935 (-) True LOC122356758
XR_006252267.1 other upstream 1620138 4672966 ~ 4689168 (-) False LOC122356061
XR_006252269.1 other upstream 1620138 4672966 ~ 4689168 (-) False LOC122356061
XR_006252268.1 other upstream 1620138 4672966 ~ 4689168 (-) False LOC122356061
XR_006252266.1 other upstream 1620138 4672966 ~ 4689168 (-) False LOC122356061
XR_006252265.1 other upstream 1620138 4672966 ~ 4689168 (-) False LOC122356061

Expression Profile