RNA id: XM_043254531.1


Basic Information

Item Value
RNA id XM_043254531.1
length 1585
RNA type mRNA
GC content 0.44
exon number 9
gene id plek2
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 12327780 ~ 12331334 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCACGTTCAGAGGAATCCGCAGCAGCTATAAAACACCTGAAGAAGCGCTTACCTGCGTATTGAGGCTGCAGTTCGTTAACATGGGCACTGAGTCAGAAAATAACGGCGTCTTTAAAGAGGGCTTTCTGGTGAAAAGGGGCCATATTGTTCAAAACTGGAAAGTGCGTTGGTTTGTACTTAAATCGGACAGACTTCTGTATTATAAATACGAGGGAGGCAAACGGGATTCCTGCCATCGAGGGACGATACCGTTGAGCGCCTGCAAAATCACATGCCCTTACCTGGAGTACGAGAATAGACCGCTGGTGATGAAGCTGCAGACCAGCACTTCAGAGGAGCACTTTCTGGAGGCCTGCACGAGAGAGGAACGTGATGAATGGGCTGCAGCGATTGGCGCAGCGGTACAGAACCTCAACCCAAATCATGCACAGCTCACCTCCCCTTCACAAGTTAAAGAATCTACATCACTCCAGCTTCACAACGTCAACCTCAGTCAGGTGGTGGACTCCATGTACGATGTGCACACTGGTATCCGGCTGTGCAGTCATGTTGAGCAGGGCAGCTCTTACACCAACTGTTTCTCAGGCTCAGCAGTGGTGGACTGGCTTGTCTTTAATAAGCTGGCTCTGACTCGTGTGGAAGCGGTGACATTAGCCTCTGCGCTGCTGGATGAGGCCTCCCTGCGACCCATTGGGATCAGGAGCGCAGACGCTCACCGTAACGCAGCTCTAGGAGAACAGTTCCTCGATGACTCCACTGCACTCTACTGCTTTTCCCAAAGCTTCCAGAAGCGAGGCAGTGTAAAAGCAGAAAAGTCTCGGTCTGCGGTGGAACTCAGTGGAAAAGTGGTAAAGAGAGGTTACCTGCTCAAACAGgggcACAAGGTAAAGAACTGGAAGGTGAGATTGTTTGTTCTGAGAGCGGAGCCTGGTTTCCTGCACTATTATGACCCAAGCAAGGATGACATCACTCCGGTTGGCAGTATATCTCTGCGTGGCTGTCTAGTGTCTGCTCTGGATGATAACGGCATACCGTCAGGTGTTAAAGGTAAAGTCCAGGGGAACCTCTTTAAAATCATCACTCAGACGGACACTCACTATTACATCCAGGCACCAACACAAGAAGAGAAGATGGACTGGATCCAAGCTATTAGACAACTGACTTAATTAGGTCATTGTTggtattgttcattttattgtttttgctaaAGTTATATTTCTGTCTGCCGCACATCTATTTAGgatattgtgttgttttaatagttttaaatgtgatatttgtgTAAGTGGAAAGAAAGTGGATATACAGTGTTACACAGCTAGTAACaagttaaagaaaaaattaaaaatgtaataataataaaataggtAATACACATGGGGCCAAGCATGAGGCTTTATTCAGCATATAGAATATTTCCATATAAAAGTCCAAAGTTTTAATGTCCTTGATAAAGACTGTAtctaatgtttaatataatatacaggTTGTAAAGCTTATACATTCAATGAATGTTGTTAATGATGGTCattgtaaaatttaatttgcccagttttctaaaataaaggttatttGTGTAATTTGT

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process

KEGG:

id description
K19993 PLEK; pleckstrin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138098 lncRNA downstream 42726 12278454 ~ 12285054 (-) True vti1b
TU138100 lncRNA downstream 42726 12278567 ~ 12285054 (-) False vti1b
TU138102 lncRNA downstream 42726 12278567 ~ 12285054 (-) False vti1b
XR_006252425.1 lncRNA downstream 147561 12151847 ~ 12180219 (-) False LOC122357111
XR_006252392.1 lncRNA upstream 70337 12401671 ~ 12406892 (-) False LOC122356854
TU138139 lncRNA upstream 70344 12401678 ~ 12406933 (-) True LOC122356854
TU138169 lncRNA upstream 97888 12429222 ~ 12430686 (-) False tmem234
TU138170 lncRNA upstream 97888 12429222 ~ 12430686 (-) True tmem234
TU138211 lncRNA upstream 200647 12531981 ~ 12533886 (-) True G93392
XM_043254986.1 mRNA downstream 5079 12298229 ~ 12322701 (-) False zfyve26
XM_043254983.1 mRNA downstream 5079 12298229 ~ 12322701 (-) False zfyve26
XM_043254985.1 mRNA downstream 5079 12298229 ~ 12322701 (-) False zfyve26
XM_043254982.1 mRNA downstream 5079 12298229 ~ 12322701 (-) False zfyve26
XM_043254984.1 mRNA downstream 5079 12298229 ~ 12322701 (-) False zfyve26
XM_043256404.1 mRNA upstream 1836 12333170 ~ 12341776 (-) True LOC122357133
XM_043256403.1 mRNA upstream 10579 12341913 ~ 12351526 (-) True fbln5
XM_043256402.1 mRNA upstream 23363 12354697 ~ 12372991 (-) True trip11
XM_043256218.1 mRNA upstream 42272 12373606 ~ 12379217 (-) False golga5
XM_043256217.1 mRNA upstream 42272 12373606 ~ 12379217 (-) True golga5
XR_006252352.1 other downstream 528748 11771428 ~ 11799032 (-) False utp25
XR_006252349.1 other downstream 796471 11526180 ~ 11531309 (-) False zdhhc16a
XR_006252282.1 other downstream 1108795 11200946 ~ 11218985 (-) False rassf4a
TU137394 other downstream 1392449 10924944 ~ 10935331 (-) True G92819
TU136940 other downstream 2137270 10185761 ~ 10190510 (-) False LOC122356841
XR_006252291.1 other upstream 97863 12429197 ~ 12430778 (-) False tmem234
TU138208 other upstream 225743 12557077 ~ 12597302 (-) True LOC122356414
TU138426 other upstream 1233088 13564422 ~ 13567925 (-) False srd5a2b
TU138887 other upstream 1364738 13696072 ~ 13696792 (-) False map3k4
TU138915 other upstream 1579005 13910339 ~ 13911837 (-) True G93875

Expression Profile