RNA id: XM_043254533.1


Basic Information

Item Value
RNA id XM_043254533.1
length 1626
RNA type mRNA
GC content 0.40
exon number 4
gene id si:ch211-10a23.2
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 12324044 ~ 12327519 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTTCGAGGACTCGACGCCGGTCTCGCGCACTGCGATGATCAATTCCGTACGTGACAGCTATTGTCCTCGCGCTTGAAACGCAACACCTGCAGGACTAAATTAAAGCCTTTCGCGACAGTCTAAAGAATGACGGATAAGGGGAACATCCGAAACGAGGAGCACTATGTTGGGGAGATCAAAGGGGGTCTACGGCCGACCATGAGGCTGGTAGTGATGGGTATTGTTCACAAGCAGCCCAAAAGTATGGTAGTGGTAGTGGCATGCCAGTCTAAAGGAGAAGGGGATGAGGAAATCGAGGGTGATGTGGGACTGGAATTGAAAGTGAACTTTTCAGAAAAGGCTGTGCTTCGTAACGCTCGTCTATCAGGAAAGTGGGGAGCTTCAGAAACTGCCCTGTCTTTCTTCCCCTTTGCTCCAGGAGAAGCCTTTAAGatGGAGATTGTGTGCGAGCACCAGCAGTTCCGTATTCTGGTGGATGGGCAGCCGTTGTGTGGTTTCACTCACAGACTGACTCAGCTCGCATCTCTCACTGCTCTCAGAGTCCACGGAGATCTACAGCTCACCAAAGTGGCTTGAGCAAGTGAAGAATTGTCCGCGATGGCATAGACTTTTCATAGAAGCGACTTAGCTGAGGTTTTTTAGAATCCTGAGCGTACTGTACACAATTGTCTTAAAGTTCcagaaattcatttaaaacatttagaactCATTTCAGTtgggtctgtgtttgttttggtagGCTAATTGGCCATTTTGTAAAGTTTCTccagtgatttttatttgtagtgGCAAATTAGGCTATTTAGGTTCAATGGTTTCGCATTGTTTGGACACATTTGAAGGAGAAAATCTAAAAGGAGCTGCGTTACCTCATGTGCAACCAGCTTTAATCAATTCAGATAACATAAAATTCTAACTATGAATGATTTTCCATAAATTAGCTCAGATATAAGATTTCCTtcatatagtttttataatacataatgcTCTACTTAacgtttttgtttggttttgattaGATATTTAGTTTCTTTGGCTCTTTGATACAGAAGCAAAAGTGCCTTCATTTGTTCCATTAGATGCACTTATACTCAGTAGAGGACTTTTGGTGTGCTTGTAACAGTAATTGTTGTAGTTcaaattcatttgcatttacacatttggcagatgcttttatccaaagcaacttacattGCATTCAAGGTATACATTTGATCAGTTCCTGCATTCCCTCAGACCCATAATCTTAGCGTTAATAGCGACATTATCTAGTTTTAGCTACAGGAATGAAAAATTAGAACAGAATAATTCAGGATCGtaagtgaaacattttttttgtttatccttTGTTCATTTGAATGTACCGCAGAAAAGTTTTGATGGCATTAAGAACCTAAGGACTCATAACTGACACCAGAATGttcactttaaaatgcaattcccTGCGATTGTATTGGTTTGAAGAAAAAGGACTCAAAGTCCATCTGAAGCCTGTACTTGGTGCTGTCAATCTACACACGTAATGCTGCAAAAGAAGCATGTATTAAAAGCAAGGTTTACTTGAATGTCTTTAAACATCTAATAATTGCAATATGTACTGTAAACAGTAAACTTTTCTTAAAGAA

Function

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137921 lncRNA upstream 56978 12202742 ~ 12267066 (+) True G93200
TU137907 lncRNA upstream 135006 12186068 ~ 12189038 (+) True G93190
TU137908 lncRNA upstream 139244 12180869 ~ 12184800 (+) True G93191
TU137897 lncRNA upstream 145578 12121939 ~ 12178466 (+) True G93182
TU137867 lncRNA upstream 216560 12104733 ~ 12107484 (+) True G93169
TU137949 lncRNA downstream 35546 12363065 ~ 12374131 (+) True G93222
TU137945 lncRNA downstream 52190 12379709 ~ 12380851 (+) True G93219
TU138003 lncRNA downstream 57788 12385307 ~ 12385618 (+) True G93267
TU137947 lncRNA downstream 104430 12431949 ~ 12436643 (+) False LOC122357045
TU138024 lncRNA downstream 120855 12448374 ~ 12450446 (+) True G93280
XM_043254990.1 mRNA upstream 25319 12294205 ~ 12298725 (+) True rdh12
XM_043254988.1 mRNA upstream 38999 12278556 ~ 12285045 (+) True arg2
XM_043256341.1 mRNA upstream 140779 12180247 ~ 12183265 (+) True slc66a3
XM_043256335.1 mRNA upstream 151701 12144639 ~ 12172343 (+) False sobpa
XM_043255921.1 mRNA downstream 64240 12391759 ~ 12395946 (+) True ndufaf1
XM_043255920.1 mRNA downstream 64240 12391759 ~ 12395946 (+) False ndufaf1
XM_043255922.1 mRNA downstream 72145 12399664 ~ 12401608 (+) True oip5
XM_043255919.1 mRNA downstream 79392 12406911 ~ 12414269 (+) False tmem39b
XM_043255918.1 mRNA downstream 80402 12407921 ~ 12414269 (+) True tmem39b
TU137630 other upstream 719192 11603697 ~ 11604852 (+) True G92977
TU137635 other upstream 719820 11603697 ~ 11604224 (+) False G92977
TU137640 other upstream 746185 11571660 ~ 11577859 (+) False lrrc9
TU137330 other upstream 1105869 11215492 ~ 11218175 (+) True G92772
TU137332 other upstream 1108957 11213526 ~ 11215087 (+) False G92772
TU138047 other downstream 244112 12571631 ~ 12575212 (+) True G93296
XR_006252318.1 other downstream 259367 12586886 ~ 12588853 (+) False mgme1
XR_006252431.1 other downstream 889139 13216658 ~ 13216757 (+) True LOC122357146
TU138522 other downstream 1412088 13739607 ~ 13909603 (+) True G93613
XR_006252357.1 other downstream 2026597 14354116 ~ 14367135 (+) False frmd6

Expression Profile