RNA id: XM_043254556.1


Basic Information

Item Value
RNA id XM_043254556.1
length 2342
RNA type mRNA
GC content 0.50
exon number 8
gene id zgc:171482
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 15443065 ~ 15507712 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACATTCATGAAGTGTGGAGAAGAATcctcttttacatttttttaaaacataaacattacaaaaatgcagcaaaacaacaacaacaacaacataaacacaTGGCAAAACAAGTATTTCCAGTACTTTTAGACATAGtcgtgaaacatttttttttattatttaatgaagcGTAAATCCTTTGACCCTAGAACTGTGCTGTTATGGTTTTACACTTCTTGGAGGTGTGCTGTAAATACCCAGGTAGATACCAAGTATCACGCGATACATCTGGTACACCATATGCTGCCATCACTGTACCATGGCACCGTCACGCAGTAATACATTTACAACACCACAAAGTCACGCGTTACATAGACACACTTCTCAAGAGGGACGCCCGATATCGCGACGAGCCATGAGAATGATACCCGCGCGAGCacgcgtgtgtgcgtgtgtgtgtgcatgtgtgtgcggtGTAATCCATATCTCTGCTAGTAGTATCTCTGGATTACTGACGTGTGTGCCCGCGCTCTTATATCTGTGCGCTCTCGCTTTACGCGCAGTTTGATGGCGTCGCCGCGCGCTCCTCTCTGCGTTCTCCGATCGTCGCTCACCATCTCACGGTTTATGGACGGCGAGGACCAGATATCATGATAGCACATCGTCGGGGTTGGTTCTACAACATTTCCGCCAGAGTGTTCCGTGGAAACTGTGTCACCGCTTGAGCTCCGAACCGAGCCGTGAGAGATAAGAGAAGTTTGCCGGATACAGGTGCGATCTCTCTCTAACTCCAGCCGATGATCACAGACACAGATCTGGACTGCGGGATTCCAGTAGATCACATCAGATCCAGCGCAAGATGAAGTCTGCCGGAGCTGGTGATGAAGGACTCTTCACGGAGAGCTACTGTAACATCTGCAACGCTCAGCTGATCTCTGAGTCCCAGCGCGTGGCACACTATGAGAGCAAGAAGCACGCCAACAAAGTACGTCTGTTCTACATGCTCCACCCGGAAGATGGAGGTCCGCCATCCAAAAGACTGAGACCAGACAATCCGGACAGTGCAGAGAATGAAGTGGACAGAAACAAATGCTGCACGCTCTGCAACATGTTTTTCACATCTGCCATTGTGGCTCAGTCACACTACCAGGGCAAAACACACGCTAAGAGAGTTCGCTTGGTACTGGGGGAGACGCCAAGTCTTCCTACACCCACAGAGTCAGCGCCGCCAACCCCCCAGACAACAGACCCCCCTCCGTGGCAGCCGCTGGCCAATCACAGCGAGGCAGGAAAGTACTGCTGCTTGTGTGGCGCCTGGTTTAACAACCCACTGATGGCACAGCAACACTACGAAGGCAAGAAACACAAGAGAAATGCGGCACGGGCGCGACTGCTGGAGCAGCTGGCTGGCAGTCTGGATGCCAATGAAAGCACAGGCCTGCGCCGGAGTTACTCGTGCAGCGTTTGTAATGTGGTTCTGAACTCCATCGAGCAGTATCATGCACATCTCCAGGGCTCCAAACACCAAAACAACTCAGGAGCACATGGGTCTGGCCTGTTGTGATTACACATGCTTTATCTTCCAGGCAGGCCGACTCCGGCCTCGCTACATCACTCGACTGGGCTTTCACCTGAGCTCTGTTTGCCCGTCAGCACTCTTAAGGAGATTTTTAGTACGTGGCCAGCGGTCGGATAAGTCAGTGATTTAGTGCGGGGCGAGAGCAGGAGTGCTGACAGTATTGCGTTTTACTACAGACGGTGAGGACGGGGCACGTGAGAGCTCAGGATTCGGTGTTCGGTGACCCATTTTCTGGGTGTGACGATAATGTGAGTGAAGATACCTTTGTCTCACCCCGTGACTAAAATGGAAAAAGGGAGGAGGGATATAGAGGATGAAAGGAGACGGCATGAGAATGAGGTTatggaaggaggaggaggatggaaGCGAACTGTCGTGCTGATTGATTAGATGAGAGAGGTGTAATCGGAGCCCTTCGCGCTGATGTTTAGACCCTCTCCTCCTGCTATCGATCCCTTGGGCTGCCTGGAACAAGATAGGAGGTTCCAGCTCATTGGGCTCCCTCTACCTGTGTAATCACTCTCCCCAACAGCAGTCCCACTCCTCAGAGGAAACCCAGAAGACCGGGGCTGTGCTCTGGTGGAACAGAGCTGATCTGTTGAGACAAGACAAGCTCAGGCTTTTCAGCCCGTAACAAAAAACGACACAGTGCCTTGTCGGGATTGGGATAAGAGTGTTAAGCCATTATGTGCAGTTGAGGACTGTATTCAGTATGCAAGTACTATACAGGCTTGAATTtcatgtggttttgtttttcaaaaaaatgtaagaacgCAATTTGTGA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139196 lncRNA downstream 159010 15279407 ~ 15284055 (-) True G94063
TU139177 lncRNA downstream 194481 15244531 ~ 15248584 (-) False col9a1b
TU139165 lncRNA downstream 211810 15227514 ~ 15231255 (-) False col9a1b
TU139147 lncRNA downstream 406071 15025712 ~ 15036994 (-) False lmbrd1
TU139135 lncRNA downstream 447365 14980996 ~ 14995700 (-) True G94016
TU139282 lncRNA upstream 96975 15604687 ~ 15605713 (-) True G94132
TU139297 lncRNA upstream 132563 15640275 ~ 15640633 (-) True G94145
TU139369 lncRNA upstream 178701 15686413 ~ 15720816 (-) False zgc:123010
TU139381 lncRNA upstream 254839 15762551 ~ 15762843 (-) True G94199
TU139382 lncRNA upstream 255712 15763424 ~ 15763745 (-) True G94200
XM_043254637.1 mRNA downstream 72715 15319657 ~ 15370350 (-) True slc35f3b
XM_043254618.1 mRNA downstream 189708 15227332 ~ 15253357 (-) True col9a1b
XM_043255651.1 mRNA downstream 343832 15024832 ~ 15099233 (-) True lmbrd1
XM_043256030.1 mRNA downstream 655961 14630594 ~ 14787104 (-) True eys
XM_043256028.1 mRNA downstream 824066 14616799 ~ 14618999 (-) True LOC122356920
XM_043254645.1 mRNA upstream 38874 15546586 ~ 15561557 (-) True sfrp5
XM_043254712.1 mRNA upstream 102154 15609866 ~ 15632570 (-) True crtac1b
XM_043254690.1 mRNA upstream 146753 15654465 ~ 15681394 (-) True loxl4
XM_043254602.1 mRNA upstream 178558 15686270 ~ 15700484 (-) True zgc:123010
XM_043256153.1 mRNA upstream 193715 15701427 ~ 15710148 (-) True pyroxd2
TU139178 other downstream 189784 15250575 ~ 15253281 (-) False col9a1b
TU139176 other downstream 200268 15240750 ~ 15242797 (-) False col9a1b
TU138948 other downstream 1278717 14160323 ~ 14164348 (-) True srsf5a
TU139278 other upstream 56905 15564617 ~ 15583917 (-) True G94128
TU139299 other upstream 134319 15642031 ~ 15642503 (-) True G94147
TU139376 other upstream 244935 15752647 ~ 15755060 (-) True nkx2.3
XR_006252348.1 other upstream 269767 15777479 ~ 15793538 (-) False LOC122356531
TU139406 other upstream 369815 15877527 ~ 15885222 (-) True G94216

Expression Profile