RNA id: XM_043254561.1


Basic Information

Item Value
RNA id XM_043254561.1
length 1014
RNA type mRNA
GC content 0.46
exon number 7
gene id syf2
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 17946259 ~ 17952030 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCGAACTGAAATGCATGACGTACTTCCTCTTTGAAAGCGATGGCGTCTAGCGCAGAGGTCGTTGCTCCCAGCAACGAAGAGGAAACCACAGAGACTCCAGCAGCTCAGAAGAGAGAAGATAGACTCAGAAAGTTCAGAGAGCTTCATTTCAAGAGGAATGAGGCTCGTAAGCTGAATCATcaggaggtggtggaggaggacAAGAGGCTGAAGCTGCCGTCAAACTGGGAAGCCAAGAAAGCCCGTCTGGAGTATGAACTCATGGTGGACCAAAAGAAGAAGgagtgTGCGGAGCAAGGTGAGGACTACGACCGCGTAAAGCTCCTGGAGATCAGCGCTGAAGACGCAGAGAGatgggagagaaagaaaaagaagagaaaccCAGATCCAGGATTCTCAGgctacGCTGAGGCCCAGCTGAGACAGTACCAGAGGCTGACGAAGCAGATCAAGCCAGATATGGAGAACTATGAGAAACAGCGGGAGGAGTGTGGAGAAGATTTCCACCCCACCCCCAACAGTCTGATTCACGGCACTCACGTCCCGTCTAAAGACAGCATCGACCGCATGGTGGACGACGTGGAGAAACAGATCGAAAAGCGCTCGAAATACAGCCGGCGCAGGGCCTACAACGACGACGCTGACATCGATTACATCAACGAGAGAAACGCTAAATTCAACAAGAAGGCTGAACGTTTCTACGGCAAATATACCGCGGAGATCAAACAGAACCTGGAGAGAGGAACGGCCGTGTAACTATGGAGACTGTTGCTATGGCCAGAAATCGCACATACAAGTGTTTTTAAGAAATCCTCCTTTGAGGTTCTTCTCTATAGTGATCttgtgaattatatattttttgcttgttacaactgtaatcatttttttttttttttttttttttccttctcttcaacctctatatttttatttcaggcaaaaaaatgttttagcatgTAAATTCATTAATTTCCTCAGCAGTTCACATCTACTTCAATAAAAGTCTAAACAGG

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K12868 SYF2; pre-mRNA-splicing factor SYF2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140025 lncRNA upstream 56358 17889654 ~ 17889901 (+) True G94637
TU139885 lncRNA upstream 701290 17212947 ~ 17244969 (+) True G94543
TU139822 lncRNA upstream 916184 17021864 ~ 17030075 (+) True G94501
TU139823 lncRNA upstream 916659 17021864 ~ 17029600 (+) False G94501
TU139800 lncRNA upstream 1007605 16926914 ~ 16938654 (+) True G94484
TU140151 lncRNA downstream 209947 18161977 ~ 18162280 (+) True G94741
XR_006252355.1 lncRNA downstream 311278 18263308 ~ 18264596 (+) True LOC122356621
TU140164 lncRNA downstream 311494 18263524 ~ 18270603 (+) True G94750
TU140167 lncRNA downstream 421533 18373563 ~ 18375173 (+) True G94753
TU140208 lncRNA downstream 567610 18519640 ~ 18519911 (+) True G94785
XM_043255027.1 mRNA upstream 193327 17742959 ~ 17752932 (+) False zbtb8os
XM_043255026.1 mRNA upstream 193327 17742965 ~ 17752932 (+) True zbtb8os
XM_043254671.1 mRNA upstream 523437 17421621 ~ 17422822 (+) True LOC122356173
XM_043255894.1 mRNA upstream 961057 16976130 ~ 16985202 (+) True zfyve21
XM_043256248.1 mRNA upstream 1045896 16894884 ~ 16900363 (+) True dact2
XM_043255018.1 mRNA downstream 12960 17964990 ~ 17966886 (+) True mgst3b
XM_043255016.1 mRNA downstream 16033 17968063 ~ 17973664 (+) True tmem50a
XM_043255012.1 mRNA downstream 28349 17980379 ~ 17994138 (+) True maco1b
XM_043255011.1 mRNA downstream 28363 17980393 ~ 17994138 (+) False maco1b
XM_043255930.1 mRNA downstream 44901 17996931 ~ 18036864 (+) True ldlrap1b
TU139910 other upstream 370321 17560296 ~ 17575938 (+) False G94564
TU139911 other upstream 384011 17560296 ~ 17562248 (+) True G94564
TU139637 other upstream 1340876 16597781 ~ 16605383 (+) True G94378
TU139570 other upstream 1427433 16515827 ~ 16518826 (+) True G94324
TU140175 other downstream 487143 18439173 ~ 18439583 (+) True G94760
TU140212 other downstream 584862 18536892 ~ 18537443 (+) True G94789
TU140195 other downstream 593322 18545352 ~ 18631718 (+) False G94776
TU140499 other downstream 1204266 19156296 ~ 19162325 (+) False lhcgr
XR_006252404.1 other downstream 1605119 19557149 ~ 19589504 (+) False foxn2a

Expression Profile