RNA id: XM_043254566.1



Basic Information


Item Value
RNA id XM_043254566.1
length 2955
RNA type mRNA
GC content 0.42
exon number 5
gene id wu:fj13e08
representative False

Chromosome Information


Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 11186438 ~ 11192124 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CGAAGAAGACGATTCAGCAGTGTAAACATGGCATTTTTTTAGTCAACAAAAAAGTAACTTCTGAACGCAAATAACTGTTTTGGTTCAGCCTTTGGGAAGAGTCTACATCCAGTCTCAAGAAGAACTACCTGAATTAGAGCTGGACATCGAAAGTCAAAGACTCGCGAAAATGGAGCAAGGTTTGCCATCTGCGAGCGTTTCCCAGCACTTTTTCAATGGATGGTTAAAAAGAGAAGATGACAGTTCACTTACCTTGCAGTCAGACTTCATTAAGTCAGAAATCCAAGTTAAAGTGGAACCTGATCAAGATGACTCTTCATTGCTTGATGTGAACGAGCTAGGAACGTTTTCTCATCCTCAGGGGAATGTTAAAGAGGAGTTTTTGGACCTCGGTTTGCAAATCTTACCAGCTGGCCTAATGCCTCCAGTTGAGATGGAAGAAGAGCTTGAAATCACACGCACTTCTCCAGATAAATCTCTGAATAGAAGAACTGATACATCAAGCAAAGGAAAACGATGCACAGTCAAAAAAAGAAcatcaagaaaaagaaaaccaacaGAGGAAATTATTCCACCTAAAATGAATTCTGATGTATCAAGTGAAAGAATGTCATTGTTAATAATGCAGGGAAATGCCAAACGACATCCAGAGAAAGCAGttttgtctATGGCGTGCCTTAAAATGCCTGCAGCTGAGATTACAGATACACTAAGAGAAGAATATGAATCCATTGCTGCCCCTGATTTGGAATCTGAGGTCTCTGATAGTGATGGCCCAGATTTGACAGAAGGTCAGAAAACTGTCTACACAGGCTTTGAGTTCTCATCTGAGGAATCTAGTGATGAGGAGAGTGAAGATCGCTTGAGTCGATGGAGCAAAGGAGACTCTTACTGGAGCAAATATCCTCCTCAAAGTGAAACCATGACCTCCTCACAGAGCAGCGCAGGGTCTGCACCAGGGTTTTCAGTAAAGACACCTAAAGGTGCCTGGGAACTTTTCATGAGCGAAAACATCATTAATGAGATACTGCAATGTACCAACTTGGATGGACAGAGAGAAGCGTTGGCAAAAGGCAAAGTGTGGCAAAAGATCACTAAAGAAGAATTAAAAGCCTTTATTGGTCTGAGTCTTCTCATTGGTGTGGAGAGAAGTAGCGATGTTCCAATCCGGGAACTGTTTATGGATCCATTACAGAACCCACTGTATAGAGCTACCATGTCTGTTGGTAGATATCAAGACCTTCATAGATTCCTGCAATTTGATAACAAGAAAACCAGGGTGGCGAGAAAGGCATCAGACCGCATGGCAGCCTTCCGAAATGTGTGGGACCTGTTCCTGACAAACTGCAGGAAAAGGTTAATCCCGAGGCATTGTGTCACTGTAGGTCCCCTACGCCATTGATGGGGTCATCTACACAGGCAGACATCCAGGAGAGGAGACTGAGGTGAACCTTGCAGAGAACACGGTCCTGAGGTTGTCCAGTGGACTTCAGcaaaaagGTCTCAACATTACAATGGACAGCAACTTCACCAGTGTCCCTCTGGCAGAGAAGCTTTTCGAGAAAAGCTTGACCGTGGTCGGGGCTCTTCACCATAAGAATCCACATGTGCCACCGATTATGAAGCCATCCAAGTTACGAGCATCACATACCTCTGAGTTTGGTTTTTGTGGCAAAGTATTCATGGTGAGCTATGTGCCAAAACTAAAAAAGACAGTGATTCTGTTGAGTACAATGCATACCAGCGATGCACTGAATGAAACAAGTGCTAAAAACAAGCCAGAGGTCATTCAGTACTACAACTGCACCAAAGGAGCAGTCAGCACTGTTAGGCTAATGGCTGAAAATTATACTTGCAAGAGGCAAACAAAGAGGTGGCCTATGCTGCTTTGGTATAACATGTTGGATGTTGCCATTGTAAACTCCTACTCCATTTTTATTGCTCAGCACCCGAGCTTCATGGGAGGTGGTCATAGTGCTCAGCGCTTGTTCATAAAAGAGCTAGCGAAAGAGCTTGTAGTGCCTCAGATACATAGGCGCAGAGAAGAAAGCCCTGGATTATCCACGAACATCCTTGAGGCCATGGACAGATGTGGGATGCCTGCATCGTTGTCATCTGTCAATTTTGAACTCCAAGAACAGAGCTGtcaaaacagaataagaaaaagatGTTATTACTGTCCCTCTGGAAGAGACAGAAAAGTGAGCAAGTTCTGTAGTGAATGCAGTCGCCCTGTCTGCAAAGATCACAGCCACATGTTGGTGACTTGCTACCGGTGCATGCCTTAAGACCCATACAGAAACAGTTTGTACATTTCTATTCTGCAGGGATAATGACAGTTCTGCTGacaaatttattataattatcgTTAACCGTACAATGTAGATTTGACATCCATGTTTATAGATATAAAGTTGagtttaagtacattttcagtgttATGCGTTAAACTTgaacattttgattttgcaaaatgttattgtttactaaacataaatatatatgaatgctGTGCATCTCAATTTCGATCAGTCAGGTGAATGAAGTGTTAAAAAGCGTGTGCAGACAGGCAAGCAAGTATATTAACAACACCACAAGGTGGAGCACTAATCAGTATGAGATTGTAGGCCAGAATACCTCAGGTGAATcgttgttttgctgttttactgtGTGAGAAtcctttagattttttaaaacccCACCTGGTCCATTAAAATGCAGTCGTTATGTTACGagtgtatttatttcttcttagtaggctttttttatgttctttacTACTTCTGATTAAGTATGATTgattaaactgaaaacaaatgttCCTTCAAAAACTAATACCTGAAGAGTTTGCTCTTTTTTCAGGTGTTTTAAAAGAACGGGTTTCCCTGGGTTCCCTGTTTGTGGCTCTTCACTTAAGAATCTCACCCCTgttgttaaataaacaaacccaTTTGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU137439 lncRNA downstream 37186 11146178 ~ 11149252 (-) True G92848
TU137420 lncRNA downstream 192640 10991391 ~ 10993798 (-) True G92841
TU137426 lncRNA downstream 194704 10989282 ~ 10991734 (-) False G92841
TU137418 lncRNA downstream 197743 10988414 ~ 10988695 (-) True G92840
TU137417 lncRNA downstream 199918 10986302 ~ 10986520 (-) True G92839
TU137428 lncRNA upstream 64956 11257080 ~ 11262637 (-) False G92842
TU137429 lncRNA upstream 64956 11257080 ~ 11262637 (-) True G92842
TU137562 lncRNA upstream 218506 11410630 ~ 11411439 (-) True G92934
TU137563 lncRNA upstream 220059 11412183 ~ 11413253 (-) True G92935
TU137736 lncRNA upstream 432674 11624798 ~ 11625140 (-) True G93062
XM_043255007.1 mRNA downstream 452 11153591 ~ 11185986 (-) True zcchc24
XM_043255467.1 mRNA downstream 222040 10959441 ~ 10964398 (-) True ppa1b
XM_043255468.1 mRNA downstream 227821 10955438 ~ 10958617 (-) True sar1ab
XM_043255464.1 mRNA downstream 231295 10951451 ~ 10955143 (-) True tysnd1
XM_043254603.1 mRNA downstream 271682 10913050 ~ 10914756 (-) True trmt2b
XM_043255887.1 mRNA upstream 181 11192305 ~ 11195431 (-) True LOC122356818
XM_043254564.1 mRNA upstream 2362 11194486 ~ 11199080 (-) True LOC122356100
XM_043254567.1 mRNA upstream 8428 11200552 ~ 11218958 (-) True rassf4a
XM_043254568.1 mRNA upstream 27479 11219603 ~ 11223816 (-) True tmem72
XM_043255669.1 mRNA upstream 120043 11312167 ~ 11324704 (-) True LOC122356689
TU137394 other downstream 251107 10924944 ~ 10935331 (-) True G92819
TU136940 other downstream 995928 10185761 ~ 10190510 (-) False LOC122356841
TU136576 other downstream 2070887 9115093 ~ 9115551 (-) True G92267
TU135889 other downstream 3138537 8043565 ~ 8047901 (-) True G91775
unassigned_transcript_1927 other downstream 4051296 7135072 ~ 7135142 (-) True trnag-gcc_69
XR_006252282.1 other upstream 8822 11200946 ~ 11218985 (-) False rassf4a
XR_006252349.1 other upstream 334056 11526180 ~ 11531309 (-) False zdhhc16a
XR_006252352.1 other upstream 579304 11771428 ~ 11799032 (-) False utp25
XR_006252291.1 other upstream 1237073 12429197 ~ 12430778 (-) False tmem234
TU138208 other upstream 1364953 12557077 ~ 12597302 (-) True LOC122356414

Expression Profile