RNA id: XR_006252286.1


Basic Information

Item Value
RNA id XR_006252286.1
length 5050
RNA type transcript
GC content 0.52
exon number 38
gene id pcdh15a
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 16009687 ~ 16169204 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGGAAGGAGGCAGAGAAGGTTGAATGAGGTTTGTATGAGGTGGGCTGCACTTTCATTGGAGCTGTCATGgtactttttaccgttacttGAGGACTAACGAACACCGTCCTGCATCAGACCTGCTCGTGGACTTCACGCGCTGAAGGAGAATCAGAAAGAAGTAAAGCCACCGGGGCTCTTGCGGTCCGTCCTCgtcagagaaaaacacacatacagagactGATGCGGGGTTCGCTGCGCGGGTCTGTCCGGTGAGACTGCTTGGATTTTAAACCGACATGGTGGGTTGACGTTTGAGCGATACGGAGACCGTCCGGTAAATTCCTGACAGGAGCAATGAATGATTTTTACGCGCGGTGCGCGTGAGTGAAAACGCTCGCGTAACTGTTGCTGAGAACGGCCGTCTGCAGGAACATGAGGAGAGGAaataactgaaacaaactgCgTGGGTTGGCAGTAGGCAGTAACTGAAGATGAGGAGGCGCTGGTGGCGATCGGGCTGTCTGGGCTTGGCGATTGGCCTGTTTGTTATCATCACCCAAATCTCGGCTCAAAACACTGAGGACTGGCACTATGAGGAATGTAAGTTGTCACGGTCGGGTCCACCTGCCACAATCGTCACCATTGATGAGGAAAGTCCAAATGGTACCGTTCTGGTAGAAAACATGCAGATCAACGGCCGGGCTCAGGATCCAGATAGAACCATCTCCTTGACTCTGCTGGACAACTACGATTACTGGGTTATCCTTGACCCTGCGCTGCAGAGACTGTTTCTCAACAGCACCGGACGAGTGCTGGACCGAGACCCACCAAGTTACATCACCACCATCGTGGTTCAGGTTCAGTGCACCAATGAGCTGGTGGGAACAGTTATTCTGCACGAAGTACGGATAGTGGTGAGGGACAAAAATGACAACACGCCTCGTTTCCAGCAGCCTCGTTACTATGTATCAGTTAATGAGCTCACTCCTGTCGGTACCACCATCTTCACCGGCTTCTCAGGAAGCAATGGAGCCACGGACATCGATGACGGACCAAACGGACAGATCGAATACGCCATTCAGTACAACCCAAATGACCCGATGTCAAACAGGACTGTGCGGGTTTCTGGGACGCTGTCTGGTAATATTGTTTTGGCAGAGCGGCTGAACTATGAGGAGAGAACTCGCTATCTAATTATAGTCCAGGCCAATGACCGGGCTCCGTATCCAGGAACTCGTCGCACAGCAACCACTACTTTAACTCTGGATGTATCGGATGGGGATGATCTGGGTCCCATGTTCCTCCCATGTGTTCTGGTCAACAACACACAGGACTGTAATCCTATCTCATACCGTGTGGCTATACCTGAGCTCACTGATCCGAGCAAACTGAACCCTCTGAACGTGACACCTCCCATTCGAGCCATCGACCAGGACAGAAACATCCAGCCACCCTCAGACAGACCGGGAATCCTGTACTTCATCCTGGTCGGTCAACCTGCTACGTACCCAGAGTTCTTTTCACTCAACAGGAGCACGGCTGAGCTGAGGCTGTTGAAGCCTGTGGACAGAGAGCTATACCAGCGCTTCAGTCTTGTTATTAAGGCCGAGCAGGATAACGGTCACCCTCTTCCTGCATACGCTGACCTGCAGATTGAAATACTGGATGAGAACAATCAGGCGCCGTATTTCCAGAGGTCCTCGTACCAGGGCTTCGTGAGTGAGTCTGCCTCGGTTGGCACCACCATCTCAGGGAGCGCCAACCTCACAGCCCCGCTGGGCATCATCGCACTGGACAACGACATCGAAGAGACAAAAGATCCTCAGTTGAAGATCACTCTGAATGGCTACACCTCCATTTTCTCCATCACATCAACTGGCATCACACGCTACCTTACTCTACTGAAACCAGTGGACAGAGAGATACAAACTAACTACACCTTAACGCTGGTGGCATCTGATGGTGTTCAACAGAGCAGACCCGTTACGGTGGACATCCTGGTCATCGATGCCAATGACAACACACCCGCTTTCAGCCAGGTGTCCTACAGTGTGGAGATCTTCACTAACATGCTGCCCGGAGAGACCGTCCTGCAGTTGACGGCCCAGGACGCTGACTCTGATTTAAACGGTCTCATCACGTATGCCATCCTGGCTGGAGATCAAGGTGATTTCATCATCAACAACCGCACAGGACGGATCACGTTAGCACCAAGGGTCACGCTGACCGTCGGCCGTTCCTACGCGCTGACCGTCAGAGCATCAGACAATGCTCCTGACACAGAGAGGAGGAGCTCCATAACTACAGTCTACATAGAGGTCCTGCCACCCAACAATCAGAGTCCACCACGATTCCCCCTACAGACCTACAACCTGGAGATCAGCGAGGCCATGAGGATAGGAGCCATACTGCTGAATCTGCAGGCTACAGACCGTGAACTGGATCCCATCACCTACCAGATACAAAGCGGTGACCCGCAGCAGGTCTTCAATCTTTCACGAACTATAGGTCTTCTGCTGCTGGCGAAACCTCTGGACAGAGAGACCATTGACCAGTATCGTCTCATCGTCACAGCATCTGACGGCCACCCAGGAGGGATTTCCACGGCCACTGTCAGCATCGTCATCACAGACGTTAATGACAACGACCCCAGCTTCGACCTCACTCTACCCAGAAACCTGACGGTGAGGGAGGAAGAGGCCAATGTGTTCGTGGGTCAAGTCCGGGCCACTGATCCTGACGGCGGGCTCAACGGTCAGGTCCGGTATCGTTTGCTCTCCTTTGCGTCTCTATTCACCATAAACGGCACGGGCAGCATCTTCACTGCGGTGCCGCTGGACCGAGAGACTCGGAGCTGGTACGATCTGATCGTGGAGGCGTCAGATGGAGCGGTGGACCCTCGCAGGAGCACCATCACACTGCTGGTGGAGGTGACAGACATCAACGACAACAGCCCTGTGTTTTCCCAGCCCATCTACAACGTCAACGTCCAAGAAAACACCCCGGCTGGAACCATCATCCTGAGACTCAGTGCGGTGGATGCCGATCTCGTCTCTAACGTGACctacagaataaaaacagaagcgGCTCGGCAGCTCTTCGCCGTGAACCGTCTGACCGGCGCTGTATCGGTCCTGCAGGCGCTAGACTTTGAGGAGTTGGCAGCCGGCAACAGCACCTACACGTTTGAAGTGGAGGCGTTAGATCACGGAGGTGTCCTTCCTCCTGGAACGGCCACAGTCATCGTTAGAATCACGGATATGAATGACTTCTCCCCGGTCTTCAGACAGCCACTTTATAAAGGGCTGGTGGCTCCAAATGCAGAGAAAGGGACAGTCATCACGACTGTTTTTGCAGATGATCAGGACCCTCCAGGTACGCCTGCCAGTAAAGTGCGCTACAGAGTGGATCAGGATCTGTCTCCGTACAGCGGAAGTATCTTTGATGTGCAGATGGACACAGGACGAGTTGTCACTAAAGTCAACCTGAACGAGCAGCCCAACACTGTCTTTAGGCTGGTGGTCATTGCCTATGACGATGGAGACCCAGTGAAGACAAACAGAACTACAGTGGAAATCACTGTGCTGCAGCCCTCCAGGATTCCCATCTTCACCGAAGAAGAGTACAGGTTTAGTCCAGTGAGTGAGAATGCTCCTGTCAGGACACCTGTGGGAATGATTCTGGCCATGGCCGTCAACACCACTGTCTTTTACTCAATAGTGAGCGGAAATGAAGGAGGTGAGTTCATGGTCAATAACCGCACTGGGATCATCTACACAAATAAACTTCTGGACTACGAGAGAGTGACGAGTTATGTGCTCCGTGTGCAGGCCGACTCTCTTGATGTCATCCTCGCCAGTCTACGTGTCCCCTCCAAAAcGAACACGGCGAAGGTATATATCGAAGTGCAGGATGAGAACGATCATCCTCCGGTCTTCACAAGGTCTCTTTACATCGGAGGAGTGACTGAAGACACTAAGACCTTTACCACAGTACTGAAAGTTGTGGCTACAGATATCGACACTGGAAACTACAGTAAGATGGCCTACAGGCTGATCATCCCCCCTACAGCCGAGGGGCAAGACAGTTTCGTCATTGAGCCGTACACTGGCGTCATCAAAAGCGCCATCATGTTCAGAAACATGCGGCGATCCTACTTCAAGTTTGAGGTCATCGCCACAGACAACTACGGGCAGGGATTGAGCGGCAGGGCTGATGTGGTGGTATCCGTTGTCAATGCCTTGGACATGCAAGTTGTGGTCTCTAATGTGCCGCCCACTGTGGTGGAGGAGAATAAAGAGCAGCTGATTAGTATTTTGGAGCGCTACGTGCAAGATCAGATCCCTGGTGCTAAAGTGATAGTGGAATCGATTGGCCCTCGGAGGCACGGAGAAGGTTATGAACTTGAGGACTATACCAAATCAGACCTGCAGGTGTACGCCATCGACCCTCTCACCAACAGAGCCATCTCCAGACAAGAGCTCTTCAAGTTTCTGGACGGCAAGATTCTGGACATCAATAAAGAGTTCCAGCCGTACCTGGGCGAGGGCGGGCGGATTCTGGAAATCCGTTCTCCTGATATTGTGGCGAGTGTGAAGAAGGCTGCGCAGGCGGTGGGCTACACAGAAGGGGCTCTACTGGCGCTGGCCATCATCATCATTCTGTGCTGCATCCCTGCTATTCTCATCGTCATGGTGACATACAAACAATTCAAAGAGAGGCAGACCGAGTGTGCCAAAACAGCCCGTATCCAGATGGCTCTTCCTGCCGGAAAATCAACAGGAGGTGGCGCTCAGACCAATCTCTACGAGGAGCTGGGAGACGGCGGCATTGATAAGAGAGGACAGGAAGTGTTGAAATGCATAAAACAGGCGTGGCTTTGGCAGAGAGcagcagctatTGAGACCCTCTCTGCTCCGGCCTGAGgCTCTCTCCATGGAATCTGGTATCGACCCTGGGCAGGATTACTATACCCAAGACTACTATAGCTACGATCAAGGGTATGATCCCTATCCACCCTACGGCAGTCGCAGAAGGCTGATTACACCCATGTATGATGAGTATGGAG

Function

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0035315 hair cell differentiation biological_process
GO:0050974 detection of mechanical stimulus involved in sensory perception biological_process
GO:0007423 sensory organ development biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139455 lncRNA downstream 46974 15967014 ~ 15967343 (-) True G94247
TU139429 lncRNA downstream 106826 15907270 ~ 15907491 (-) True G94232
TU139407 lncRNA downstream 129095 15877527 ~ 15885222 (-) False G94216
TU139382 lncRNA downstream 250572 15763424 ~ 15763745 (-) True G94200
TU139381 lncRNA downstream 251474 15762551 ~ 15762843 (-) True G94199
TU139518 lncRNA upstream 167389 16330142 ~ 16332347 (-) True G94298
TU139539 lncRNA upstream 213820 16376573 ~ 16376923 (-) True G94308
TU139696 lncRNA upstream 259913 16422666 ~ 16423793 (-) True G94411
TU139699 lncRNA upstream 267088 16429841 ~ 16430293 (-) True G94414
TU139701 lncRNA upstream 267921 16430674 ~ 16432430 (-) True G94416
XM_043254666.1 mRNA downstream 120640 15889973 ~ 15893677 (-) True morn4
XM_043255688.1 mRNA downstream 137480 15872075 ~ 15876837 (-) False st3gal7
XM_043255687.1 mRNA downstream 137496 15872075 ~ 15876821 (-) True st3gal7
XM_043255330.1 mRNA downstream 220779 15778448 ~ 15793538 (-) False LOC122356531
XM_043255329.1 mRNA downstream 220780 15774777 ~ 15793537 (-) True LOC122356531
XM_043256346.1 mRNA upstream 116912 16279665 ~ 16289717 (-) True ipmka
XM_043254577.1 mRNA upstream 127412 16290165 ~ 16292379 (-) True cisd1
XM_043255786.1 mRNA upstream 139456 16302209 ~ 16304328 (-) True LOC122356736
XM_043254968.1 mRNA upstream 172271 16335024 ~ 16361805 (-) False LOC122356349
XM_043254969.1 mRNA upstream 172271 16335024 ~ 16361056 (-) True LOC122356349
TU139406 other downstream 129095 15877527 ~ 15885222 (-) True G94216
XR_006252348.1 other downstream 220779 15777479 ~ 15793538 (-) False LOC122356531
TU139376 other downstream 259257 15752647 ~ 15755060 (-) True nkx2.3
TU139299 other downstream 371814 15642031 ~ 15642503 (-) True G94147
TU139278 other downstream 430400 15564617 ~ 15583917 (-) True G94128
TU139489 other upstream 127401 16290154 ~ 16292366 (-) False cisd1
TU139697 other upstream 262944 16425697 ~ 16426535 (-) True G94412
unassigned_transcript_1928 other upstream 284938 16447691 ~ 16447762 (-) True trnah-gug_23
unassigned_transcript_1929 other upstream 1556354 17719107 ~ 17719179 (-) True trnav-cac_10
unassigned_transcript_1930 other upstream 1556881 17719634 ~ 17719706 (-) True trnav-aac_26

Expression Profile