RNA id: XM_043254603.1


Basic Information

Item Value
RNA id XM_043254603.1
length 1707
RNA type mRNA
GC content 0.49
exon number 1
gene id trmt2b
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 10913050 ~ 10914756 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAGAAAGTGGTGTCGTTACAGCGTCATAGCAGCTAAAGTTGTTGTGGGCACATGGAAAGGTACAAGGAACGATATTTGTTTAACCGGATTGACAGTTTACGCGTGTATGTGGTGaggaaaatatatatctaaatcaCTGCCGCGAAAATTTCATAACATTATATAGAGCCGTCTTTTGAGCGCGTGACCTCAGAAGCTCCATCGATTTCGCGTGCCAACGAAACAATGCGCGTACGCTTATCGTGGCTTCTGCTGAAACGAACAGTCGTTATACCAAAAATATGCTTCAGCTATTCTGTAGCAAGCCGCCGTGCCGCCAATATTGACTCGAGGCCTGTAAAGGCAAGAAAGGCACGGAGACCCCAACTCCCTGCTGACTGGCATACTCTCTCCTGGGAAGAGAGACTGGCTGATTCTGTGACTCCTCTGTGGAGAATGAGTTACGAGCAGCAGCTTCAGTGGAAACAAGAGCAGCAGCACAGGATCTTACTTGAGATGACAAAGCAACTAACTGGGGATTTAAAGCACTCTTTTTCAACTGACTTAAGTTTCCCCCTGCTTCCCATAGTAGCATCACCAGTGATTGATGGATACCGCAACAAATCAACTTTCTCTGTCAACATTGGGGTAGACGGCAATCCAAAAACTGTTGGATTTTATATCGGTAATAGTAAAGCAGGCAACATCGTCTGTGTCCACGGTGACCATCTCCCGAACATACCTTCGAAACACAGCATGGTTGCAAGGCACTATGAAGATTTTATACGCCTCTCGCCACTCAGACCGTGCATTTTATTTCACGACGGTGGTCACTGGAGAGAAATTACGATAAGGACAAATTCTGCCAGTCACACGATGGCCATAGTTTACTTCCACCCCCAAACCCTAACCCCTGAGGACATAGCCGTCCATAAAGCTGCTCTGGTGGAGTACTTCACGCAAGGTCCCGGAGCGGTTTGTCAGCTGGATTCCCTGTACTTCCAGGAGACCACAATGACCCGTTGCAGTCATGAACAATCCCCCTATCGGCTTCTGCACGGACGGCCTCATATCTTCGAAGAGGTGCTTGGCTTGAAGTTCCGCATTTCTGCCGATTCGTTCTTCCAGGTGAATCGGAGGGCGGCGGAGGCTTTGTACAAAACCGTCGCGGAGCTGAACGGGGAGCGCGTCGGGGGCACCCTGCTGGATGTCTGCTGCGGAACTGGAGCCATTGGCATCTCGTTATCACCGCAGACGGAGAGAGTCATTGGCATTGAGCTCATCGAGCAGGCGGTCGAGGACGCCAAGTTTAACGCAGCGCTAAACGGAGTTCATAATTGTGAATTTCTCTCAGGCAAAGCAGAAGCTGTCCTGCCAGATCTGTTGGCCTCTTTGAATAGCGACGGCGGGCTGACAGCCGTGGTGAATCCGTCCAGGGCTGGCCTACATTATCGAGTTGTCAGAGCCTTGAGGAACCACACAGCCATAAGGAGGCTTGTCTATATATCGTGCAAACCTTATGGGGAGGCAATGAGGAACTTTAGAGATCTGTGCAGTACAGGCTATAAGAGGAAGACCACTGGAGACGCCTTCAAACCAGCCATGGCCGTCCCTGTGGACCTGTTTCCACACACTACTCACTGTGAACTAGTGCTAGTGTTTGAGCGATAGTAGCTATTTCTGTTGTTCGTTCTGACTTGTTATTAAACAACAGtggaaaatgtttaa

Function

GO:

id name namespace
GO:0008033 tRNA processing biological_process
GO:0032259 methylation biological_process
GO:0030697 S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase activity molecular_function

KEGG:

id description
K15331 TRMT2B, TRM2; tRNA (uracil-5-)-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252378.1 lncRNA downstream 113186 10787586 ~ 10799864 (-) False LOC122356733
XR_006252376.1 lncRNA downstream 113186 10787586 ~ 10799864 (-) False LOC122356733
XR_006252377.1 lncRNA downstream 117081 10787586 ~ 10795969 (-) True LOC122356733
XR_006252397.1 lncRNA downstream 125546 10784852 ~ 10787504 (-) True LOC122356898
TU137350 lncRNA downstream 128355 10784373 ~ 10784695 (-) True G92788
TU137407 lncRNA upstream 30448 10945204 ~ 10947731 (-) True G92829
TU137414 lncRNA upstream 61777 10976533 ~ 10977459 (-) True G92836
TU137417 lncRNA upstream 71546 10986302 ~ 10986520 (-) True G92839
TU137418 lncRNA upstream 73658 10988414 ~ 10988695 (-) True G92840
TU137426 lncRNA upstream 74526 10989282 ~ 10991734 (-) False G92841
XM_043255949.1 mRNA downstream 1221 10906055 ~ 10911829 (-) True scdb
XM_043255948.1 mRNA downstream 1223 10906055 ~ 10911827 (-) False scdb
XM_043255947.1 mRNA downstream 7136 10898368 ~ 10905914 (-) True wnt8b
XM_043255558.1 mRNA downstream 19098 10886804 ~ 10893952 (-) True hif1an
XM_043256242.1 mRNA downstream 210953 10669026 ~ 10702097 (-) False cdhr1a
XM_043255464.1 mRNA upstream 36695 10951451 ~ 10955143 (-) True tysnd1
XM_043255468.1 mRNA upstream 40682 10955438 ~ 10958617 (-) True sar1ab
XM_043255467.1 mRNA upstream 44685 10959441 ~ 10964398 (-) True ppa1b
XM_043255007.1 mRNA upstream 238835 11153591 ~ 11185986 (-) True zcchc24
XM_043254566.1 mRNA upstream 271682 11186438 ~ 11192124 (-) False wu:fj13e08
TU136940 other downstream 722540 10185761 ~ 10190510 (-) False LOC122356841
TU136576 other downstream 1797499 9115093 ~ 9115551 (-) True G92267
TU135889 other downstream 2865149 8043565 ~ 8047901 (-) True G91775
unassigned_transcript_1927 other downstream 3777908 7135072 ~ 7135142 (-) True trnag-gcc_69
unassigned_transcript_1925 other downstream 3781835 7131145 ~ 7131215 (-) True trnag-gcc_67
TU137394 other upstream 10188 10924944 ~ 10935331 (-) True G92819
XR_006252282.1 other upstream 286190 11200946 ~ 11218985 (-) False rassf4a
XR_006252349.1 other upstream 611424 11526180 ~ 11531309 (-) False zdhhc16a
XR_006252352.1 other upstream 856672 11771428 ~ 11799032 (-) False utp25
XR_006252291.1 other upstream 1514441 12429197 ~ 12430778 (-) False tmem234

Expression Profile