RNA id: XM_043254614.1


Basic Information

Item Value
RNA id XM_043254614.1
length 6580
RNA type mRNA
GC content 0.47
exon number 40
gene id ptpn20
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 11426414 ~ 11454711 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTAAGTAAGGTATAGTaagctcatttaaattaattaaagtcTACATCAAAAAAAGTGGTACCAACAGAACATTCTTTAGGTAAGTGCAGATTGATTAGTGATGGACATGTTCTTTGTGTGAAATGTCTCCCTCTGGCGTCCTTTTTGCTTAGTTACTGTTAAACAGACCAGGATACATGGGAGTTTTTCTCAAAGGCTctggcacattttttaaaacatttaacattcttTAAACTGTGAGTGAAATTGTCACTACTGCAAGTCAAACCATTTAATTCATGTTCACCCTGTAAAAGACTCCAGGATCTGTATTGTTCAGGGGAAATACAAATTTACAGTAGATGTGATTTAGAAATAGATATCttaacaaacatatttaatgttagGGAAAAAGTGGCTGAAACCTTTTCAAATCTTTAAGACCTCAGCATAATTTGTGTAGCAAATGTAGCAAATAAAAGCCGTCTGTTTGCTTCTTTCCAGAAAAGAATCTGAAATTGGgaagaaatgtatttgtatgtgtcCTCTGAAGTACAATCCAATCACCAGTGATTATGCAAAACAACTGGCACATTCTTGCCTAAACTTATTCCTTTGATAGCTGGAAATGAAGTcagcaaaagacaaaaatagatAATTGTAGACAGATCTAGAGTTACACAtcacacaatataaataatgtacattacaCAATATTGTTATGAAACATTGGTGATGAGCTCAGAGTCCCTGCTGCTCACTTTGTTTAGCCTCCATCCTCCTCTTTCAGCTGATTTCTCTCCTCCTTCATAAGCCAGTTAGCTTGTGTCTCTCCTTCTCAGGTATCCGTCTCGCGATTCCGCAGGATGAGCAGCACATTTGTGACCCTCGCCGAGGTGCTGGAAGCCAGAGGAGGACCGCTGGAAGAGGACGAGGTGTGGTCGCTCCTGCTGGGCTCAGCTGAATCCCTCTTAGACCTGTCCTACAAAGGTCACAATATCTGCAACATTATAACACCTGCATCACTGCTCTTGTCCGCGACTGGGACGCTGGCGTTCAAGAACTGTGCTATGACAGATGAGGTGTGTGCCTTCACAGCCCCAGAGATGCTGCAAGGCCGTGCCATCTCCACCAAGCTAGCTATGGAGAAGATAATCGTTTATTCTCTTGGGATGACTCTGTATTGGTCAGTTGATTATCATCTCCCTCAAAACCAGCCCATTCAGCTAAGTGACTCTCTGAATTGCCTTCTCCTGAGCATGTGTGAGGACATGGCCCATCGACGAGCCAACCTGAACTCCATCTTGGAGGTGTGTGAATCACACCACAAAGCATCTCTCCTGCCTCCTCCAAACAAAGTCATCAAACAGCTGGTGGAGGATGTCTTTCAAGACTCGGTGGATCGAGCTGCTTTAACTGAGAATGTTGTACAGTTGAGTGGGAAAAGTCAGATGATCAGAGAAAGACTACATGGTAAGCGTGGACCATATCCTGGTTATACAGAGGGGAACAGAGCTTCAGGAGAGACTCGCAGACTGTCTCTGGACTCTGAGCCAAAGCAAGGACATTCGCAACAACAGAAAACCTGGTCTCTCAGAAGTAGACCTAGTCAGACTACATCCTATCAGGGCTCAAACAGAATTCCACTGGGGCTTCACCACAGACGAAGCACAAGTTGTTGGCTGTCACAAAGCACATGCCTCAACGTTCCCAAAAAGGGTGAAGCCCGACCTTCCAGTCCCTGTATCACTGTTAGTGAGTCTGTAGTCAGCCTCTCCCAAAGGAAAACTAAGaGTCTTGGACCTGAATTTACCAGGATGATTGATGAACCTCAAATAGTTTTAGAGCTGCCGGGATCTATAGTgTCAAAGAAAGGCAAGTCAGGCTTGTCTCAAAGGGAGGTAAACGTGATCATGCCAAATGAACAGTGTGTGGCAGTGAAATGTGACATCAAGTCCCGTGGGAGAGATGTCTTTGACATGGTCGTGGCACACGCTAACCTTGTGGAGCACTTTTACTTTGGCCTTGCCTTCATTGATGatggtgaatttttctttttggaccCTGAGACAAAAATTTCAAAGGTTGCCCCAGATTACTGGAAGAAAGTGGCTTCTGCaacatttatgctttttctCCGTGTCAAATTTTTCCCTGATGACATCTcctatatattgcaTAGATTTACACGACACCAATACTATCTCCAGCTGAGGAGGGACGTTCTGGAGGACAGAGTGTACTGTACTGAGGAGACTGCATTGTTTCTTGCTGCATTAGCACTGCAGGCTGAGTTTGGAGATTATATGCCTGAAGTTTATGGGAAGAACTATTTTCAAATGGAGCAGTACATCTCTAAGAGAGTCATAGAGAAAGTGGCCTTGCCCTGTTTAAGAGAGGAGTTGCCAAGGTTACATGCCAATAATGCCCACATGCTTCCAGAAGAGGCTGAGATGGAGTTTTTAAAGATTGCTCAGCAGCTGCCAGAGTATGGAGTGCTGTTCCACAGAGTTGCCCGTGAAAGGAAACCTATTATTGGAGAGCTGGTTTTGGGAATTTGTGCCAAAGGAATTATGGTTTATGAAGTTAAGAACCATTCTCGTGTTTTAAGCCGCAAATTTCActggacagagacagacagtcTCTCAACAAGTAGACGAAAATTTACCATTGAGTGCAGCCCGAGCGGGAAGAAGCACTCATTTGTGACAGAGAGCTCAAAGATAGCACAGTACCTCCTGAACCTCTGCTCAGCCCAGCACAAGTTTCACAGTGAGATGACCTCTCGTCAGCTGACCTACTGTTTAGCCTCAGATGACAGCGTGGCAAAATACACATCAATATGCCGCGCTCGACACAATCAGATAAAGAGGCTATCCTGCTCGGAGATTGTGCTCAACAATATTGGTTTGAATGGATTACCGAATGACTCCATGAGCAAGTCTTGCGATGACCTGTCAGCAAAGATCGGAGTTCGGATTCAGCAACAAAATGAAGTAAATTACATTCCTGAACCAAGAACCCCAAGTGAACTAAAAGACCAGAGCGGAAGCAGCAGCCCTCCAGAAACTTTCAGTCCTCCAGTCTATCGCATCATGTCCAATGTCTCTTTGCAAAAGCAAGACTCAGAGGTTCATTCCACCACTTCGTCTATAAGAGtggaCACACCCACAAGGACAACCCCAGAGAGAGAAATCATCTGTGTTACTTTAAAGAAGGATCCAAAACTGGGTTTCTGTTTTGTAATTGTCGGGGAGGACAACACAGGGAAGCTTGATTTGGGAATTTTCATAGCATCCATCGTTCCCGATGGGCCAGCTGATAGGGACGGCAGAATCAGACCCggTGGTCGACTGATCTCTCTGAATAAGATCAGTCTAGAGGGGGTGACGTTTAATATAGCTGCTGCCATACTTCAGAGCAGCCCAGATGAAGTGGAGCTCATAGTGTCCCAACCCAAACAGGATCTCCGGGACAGTAAGACCTCACTGGCTACAAGCAATTTAGGGATGATGCTGGAAAGAGGCTTTGGCTCTCAAAGCACCCTGAGCGCAGAGTACAGGCCTGTAATGGAGGAGCTGGAAGAGACCCTCTCAAACATCATGGCTCCTAAAATGGGCAAAAGGCTGCACATACCCGTGGTGCGGATTCTGGATTTTCAGGATAGGATGTCTAATAATCCGTCGAGCTTCGGTTCAAAGCCAGGTGAAGTAATCTACATGGAGCTGAGAAAGATCAACAGCAGCTTGGGAATCAGTGTCGCTgGTGGAATTAACACTAATGTACATCATGGAGGAATCTACATCAAAAACGTAATCCAAGGAGGAGCGGCAGATCAAGATGGAAGGATACAGATAGgtgACAGGCTGCTAGAGGTGGACGGCTGTAACCTGCGTGCTGTCACACACAGGCAGGCGGTAGAGTGCTTGAAGAGGACGGGGGAGGTGGTGAGCCTGGTTCTGGAACGAGAGCCTCCAGTGGTGCTGGATACTTACAGTGCCTCTTCCACGTTGGAGAGGCATAGATCTCCGTCACCCCTCAGTGCGCAAAGCACGCCCACCCCCCTGAGGAGAGATGTGACCATGGAAACGCCCTTGTCTGTCAGGGCCAAGGACTTCAGCTTTGTGTCAGATGAAAACATCCTGGAGGTGACGCTACAGAAGAGTCTCAGTAGCCTGGGGTTCAATTTCATCATATCTGAACTGGGTCCGGATGAGGGCAGCATGGTGCATATTAAGAGCCTTTCTTCTGGTCAGTCTGCAGGGGATTGTGGGCTTCTGAAAGAGGGAGACATAATCCTGGCTGTCAATGGAGAACCTGTCAGAGGCCTTTCCTATGAGGAAATTCTACATCTCCTCCAAAAATCTCCTGAGATTAGGCTGTCAATCTGCAGACCTTTACAGGATGAACATACAGATATTGAGACCTCTCTGGGTCATGATACACTTCCAAACCGTGCACTGAGATCCAGGTCTCTAGATCTGCAGACGAGGACTGTTGCCCCAGACTTTAGTGAACTTCTCAAGAAGAGGGTGACAGAGGTGGGTCTAAAGAAAGACGTTTCCCCAGAGAAAGCCCAGGACATCCCACTGACCCAGGAGACACCAGATACTGAGCTGGTAGATACGACTATATTAGTCCCACCACCCCTACCTCCACGTCCATCTTCAGGCGAAGCTGGAGAACCAAAACCTCATGCCATAATAGGGGAGGGACATGAGAGCAAAGACCCACCCCCAACTCCTCCCCCAACACCAAGcactcttaaagtgacagcggCCAACCAAGCACCAACTCCTGTAGGCCCTGAAACAGCCCATCAACAGGAGTCAAAAAATGATACCATCTCAACCAACCATGTGTTAGCTTGTACCAGTCATACAACTGAGGGTGTGGAAGAAAGCATGACAAGTTTCACAGCTAATGGACTGACCGTCATAGCCGATGAGGAATACTTGACCATCACCACCACAGCACCCTCTCCTCCAAGCAGCAGCATTGCTGTCTCCAATGAACTTTCCCCTCCACCGGCCCTTTCTCCATCACTGTTAAGCACACCTCCATCCTACCAGCAAGCTACTCAAGCATCATCACCAGTGAAACCTCCTACCCAGTTTACCATCCCCTCAGCCAGCAACAACAATGGCTgggatgatgatgaagaagaggaggatgatgaagatCCCAGAAGGGATATGTTGAAGGAGTTCGAACTGACTGTCTCACTGACCAAATCATGGTGTGGCAGTTTTGGATTTACAATAACCAGGAGTAAACTGGACAGCTGCTTTTATGTCCAGGAGGTCTTGGATAATCCAGCCAAAGCAGATGGCAGACTCAGGGCAGGAGACAGGCTTGTCATGGTAAACGGCCACAATGTGACCAATGTGACAGATGATGTGGCTATTAGCATCCTCAGGTCCTCTTCTAAAAGATTGCACATGGTGCTGGGCAGAGCTGTTCAAAATCTTCTCCCTCCGCCACCTCCTGATACCCTCCAGGACATTGTCATTCCCAAGACTCTATCTGGACAATTGGGTATCAAGCTTACAGGAGGTATTGGCAGCAAGTGGCAGGGAATTTATGTCCAGGAGGTGGTGCCAAGCTCTCCTGCTAGTGAAGAGGGCAGCATTCAGCCCAATGACAagattgtttatatatgtgGGAAGTGCACCCTGGGAATGACGCTGGAGGATGCTGTGAAAGTATGCGAAAGTGCCCCGCGCAAAGTTCGATTCAAAGCCATGAGAGATGATCAACCAGTGATACCAGTAGATAAATGGAATGGTTTGTTTGATTGGAAGGAGAAAAAAGTCTTCCCCCACCTAGAAGAGCCTGTGTCCCCTGACATGGAGGCGACTCCTACTGATGTTAAACCTGTCACTGACAGTGCCATGCAATTCAGGAAAAGGCTGTCTGTCACATCAGAGCAGGAGAGCTGTATTCTCCAGGTGGAGTTCACCAAGCCTGAGAAAGGTGGGCTGGGCTTTGCTCTGGTGGGCGGAGTTAATGGAAGCACACTGAGAGTGAAGGATATTTGTTGTGGGGGTGTGGCCGAGCAGGACGGTCGTCTCCGAGTGGGTGATATTCTTTTGGAGGTGAATGGCATCATTGTATCAGGACTAAGCCACGGTAAAGTTGTGGATATCTTGCGGAAGGCAGAGGGCATGGTTCAGCTGACGGTATGTAGGGACATCCTGCCCATGTCAACCTGCTCTGGTTCCAGCTCCCCTGCTGAGGCCTCTCAGGAATTCAACACATCAAATTCTCCAGATATTAcaacacaaacagaaacacaggcGGATCatgtgtctttccaaacctcAGAATGTTCTGGTCTTAGAGGGGAATGTGAGcagGAAAGTCGAAACTGTACACCCACCTGTCAGAGGTGTTGTCCATCTCTGGGAGTCACAGACATGCTACAGGAAAGgtgGAAAAATCGCAGGAAAATCAGCCTTGCATGATAACAGGCCCCGGAACGTAGCAATGTGGTCAAGGTCTCTGCTCATTCCTGCCCCGTACCCCCTTCAGGACAGATCCTCAGAAGCAGCATCTAGAAAAATCTGCCATGAAAACAGAGCACAGCCAGTCAGACGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137550 lncRNA upstream 37395 11390739 ~ 11390989 (+) False arhgap22
TU137527 lncRNA upstream 59477 11368266 ~ 11368907 (+) True G92907
TU137340 lncRNA upstream 165764 11255631 ~ 11262620 (+) True cxcl12a
TU137325 lncRNA upstream 224700 11202654 ~ 11203684 (+) True G92767
XR_006252302.1 lncRNA upstream 406328 11004910 ~ 11022056 (+) True LOC122356274
TU137585 lncRNA downstream 61375 11509238 ~ 11509888 (+) True G92952
TU137594 lncRNA downstream 66614 11514477 ~ 11533930 (+) True G92958
TU137599 lncRNA downstream 70757 11518620 ~ 11519343 (+) True G92962
TU137606 lncRNA downstream 77494 11525357 ~ 11529080 (+) True G92965
TU137616 lncRNA downstream 95190 11543053 ~ 11558240 (+) True G92968
XM_043255529.1 mRNA upstream 14869 11389385 ~ 11413515 (+) False arhgap22
XM_043255531.1 mRNA upstream 14869 11389421 ~ 11413515 (+) False arhgap22
XM_043255530.1 mRNA upstream 14869 11390699 ~ 11413515 (+) False arhgap22
XM_043255532.1 mRNA upstream 14869 11399960 ~ 11413515 (+) True arhgap22
XM_043254843.1 mRNA upstream 40191 11382438 ~ 11388193 (+) False si:ch211-223a10.1
XM_043254670.1 mRNA downstream 29345 11477208 ~ 11480996 (+) True gdf10a
XM_043255618.1 mRNA downstream 38909 11486772 ~ 11507939 (+) True antxr1d
XM_043255343.1 mRNA downstream 83992 11531855 ~ 11533395 (+) True mettl18
XM_043254710.1 mRNA downstream 93259 11541122 ~ 11557216 (+) True tdrd9
XM_043254711.1 mRNA downstream 93259 11541122 ~ 11556025 (+) False tdrd9
TU137330 other upstream 210209 11215492 ~ 11218175 (+) True G92772
TU137332 other upstream 213297 11213526 ~ 11215087 (+) False G92772
TU137252 other upstream 459470 10964873 ~ 10968914 (+) True eif4ebp2
XR_006252423.1 other upstream 1008790 10418822 ~ 10419594 (+) False ly6pge
XR_006252428.1 other upstream 1099105 10329144 ~ 10329279 (+) True LOC122357143
TU137640 other downstream 123797 11571660 ~ 11577859 (+) False lrrc9
TU137630 other downstream 155834 11603697 ~ 11604852 (+) True G92977
TU137635 other downstream 155834 11603697 ~ 11604224 (+) False G92977
TU138047 other downstream 1123768 12571631 ~ 12575212 (+) True G93296
XR_006252318.1 other downstream 1139023 12586886 ~ 12588853 (+) False mgme1

Expression Profile