RNA id: XM_043254629.1


Basic Information

Item Value
RNA id XM_043254629.1
length 2528
RNA type mRNA
GC content 0.43
exon number 12
gene id tial1
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 9443786 ~ 9450349 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGACTAGCCGGGTTCCGCCATTTTCTACTCAAGATTGAAAGTAACACCAGTCCAGTATTGTTCATCCTAAAAATAAACCACATCTGAGATACTGAAAACAAGTTTTGTTAGCACTCCTTCCGGCATTCAAGAATGGAAGACGAGAGCCACCCAAAAACCCTCTACGTTGGGAATCTTTCAAGAGATGTAACAGAGAACTTGATTCTTCAGTTGTTTACTCAGATTGGGCCCTGTAAAAGTTGTAAAATGATAACAGAGCAATCCGATAGCAGCAGGAAGGTGAACTCTATTGGATTTTCTGTTTTGCAGCATACTAGCAATGATCCGTATTGCTTTGTGGAGTTCTTTGAACACAGAGACGCCGCAGCTGCTTTGGCCGCCATGAACGGAAGGAAGATTTTGGGAAAGGAAGTCAAGGTAAATTGGGCGACCACTCCTAGCAGTCAGAAGAAAGACACATCCAAtcactttcatgtttttgtggGAGATTTGAGCCCTGAGATCACAACCGATGACATCAGAGCTGCATTTGCACCCTTTGGAAAAATCTCGGATGCACGAGTGGTGAAGGATATGACAACAGGGAAATCAAAGGGGTATGGATTTGTGTCCTTCTATAACAAACTGGATGCTGAGAATGCCATAGTACACATGGGGGGTCAGTGGCTTGGTGGACGGCAAATCCGGACTAACTGGGCAACTCGGAAACCTCCAGCCCCCAAGAGCGTGCAAGACAACAGCTCCAAGCAGCTGAGATTTGATGAGGTGGTGAACCAGTCGAGTCCTCAGAACTGCACAGTGTACTGCGGTGGCATTCAGTCAGGTCTCACAGAACACCTTATGCGACAGACGTTTTCTCCTTTCGGGCAGATAATGGAGATCAGAGTTTTTCCAGAGAAGGGTTATTCTTTTATCAGGTTCTCCTCTCATGAAAGTGCTGCTCACGCCATCGTCTCAGTGAATGGTACCACCATCGAAGGTCATGTTGTGAAATGCTACTGGGGCAAAGAGTCACCCGACATGGCCAAAAATGTCCAGCCGATGGAGTACGGTCAGTGGGGACACTGGAATCAAATGTACAGCAATCCTCAACAATATGGTCAGTACATGACAAACGGCTGGCAAGTGCCGTCCTATGGAATGTACGGGCAAACATGGAACCAGCAAGGATTTGGTGTGGAACAATCACAGTCCCCGGCCTGGGTGGGAGGTTTTGGGACGCAACCCTCTCAGGCTCAGCCTGGCCCAGTGATGAACCAGGCTAACTTTGGCATGGCTGGATACCAGACACAGTGATCGGATCTTGGTTCTACATAACACACGGCTCTCACTTCTTTAGAACCTGCTCTCATAGGGAGGGTTGCTAAAGACTCATAGGTGCACATCATCTTTTTCCCCACAACCATTGGATCTGGAAGCAGGAACTGCTTTATTGTAAAGCTTCAAATATAGATTAAAGAGGCAATTGAGACGAGCGCCTTCAATGGAAATCTGAGTTCATTTACAAGATTTGTTCCTGTTTTAGTGGAATTGGAGAAGATATGTTGTATCTCTTGCCCCATCCCCACCCTTTTTTACTGCATATCTTGAGGAaaactgcagatttttttttttcccccctaaatCCCAACTTCAGGAACTTTACAGGTGCATTGCAGAAAGCCCGTGATGTAAATGGTTTTTGAACTACGTATTTTCTTCTTTCACCCCCTTCTTCCGAAATAGCTGATCATGCATTTGCTTGTTCATTACAGTTATGGACTTAgaattttgtataaaaacacaacaaacagccaaaaaaaaaactttcattctGCATTCTGACTTGGCAAACAAATGTAAGTAAAGGCACTTTTTGGGGGTTCATTGGACCTGTGTCTTGTAAATGTTGACGTGTAAATGAATTTCTATGTGCAGTGGTGTATATTTAATCCACAATAGCTCCCCGTTCTCCGTTCCTAGAGCTCTTTGATACTGTGTGTATAATGTATCTTTTTACTCCAATTTACAGACAGTGAAATCTCTCCCGTTCACTATGGAGAAAGGGTCATAATGGCCATACCTGTATATATCTTTTGATATCTTGGCCTGGAATAAGGGTttcaaagcatgcgctctacttGACGGACTTTTGCAGAACTAATGCAGCGTATGTTAGACAAATGTTACGTGTGTGACTGACATTTACAAGCAAGCCTTAATTTTTGCTCAGTCACATATTTCAGTTAAACACTTTGAGACCCCCGTAGAGAGCTGTACGATTTATTTTAGAGCCTACTGTAAATTTCTCCCTTTGCTGTTTTAACAAATATGCGTGCCATTTTTGAGTAGCCAGAAAAAAAggattggatttttttttttttttttttttcctccgggGATGTTAAGGAATTGCATGTTTCAAACCATAATATTGAGGTTGCTCAAAGCATTGAATGTAAAAGGCAGAAATGTTTGAATACAATTTAGCATTTCGAGTTCTCTTTTTAGTCTAAATGAGTCTCAATAAATGAACCATTGGACAAGAA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136626 lncRNA downstream 38126 9398804 ~ 9405660 (-) False G92295
TU136624 lncRNA downstream 38126 9401775 ~ 9405660 (-) True G92295
TU136625 lncRNA downstream 43361 9398804 ~ 9400425 (-) False G92295
TU136617 lncRNA downstream 102716 9340345 ~ 9341070 (-) True G92289
TU136589 lncRNA downstream 309301 9134152 ~ 9134485 (-) True G92277
TU136647 lncRNA upstream 48 9450396 ~ 9450688 (-) True G92314
TU136713 lncRNA upstream 875 9451223 ~ 9454307 (-) True G92367
TU136755 lncRNA upstream 144678 9595026 ~ 9595280 (-) True G92391
TU136780 lncRNA upstream 190121 9640469 ~ 9641201 (-) True G92407
XR_006252386.1 lncRNA upstream 248665 9699013 ~ 10050383 (-) False LOC122356802
XM_043256236.1 mRNA downstream 34255 9405901 ~ 9409531 (-) True LOC122357054
XM_043254676.1 mRNA downstream 57067 9382396 ~ 9386719 (-) True plaua
XM_043255020.1 mRNA downstream 66337 9342453 ~ 9377449 (-) False vcla
XM_043255355.1 mRNA upstream 23872 9474220 ~ 9481419 (-) False LOC122356541
XM_043255354.1 mRNA upstream 23872 9474220 ~ 9481419 (-) True LOC122356541
XM_043255606.1 mRNA upstream 41221 9491569 ~ 9497713 (-) True csgalnact2
XM_043256041.1 mRNA upstream 47886 9498234 ~ 9519977 (-) False ret
XM_043256040.1 mRNA upstream 47886 9498234 ~ 9519977 (-) False ret
TU136576 other downstream 328235 9115093 ~ 9115551 (-) True G92267
TU135889 other downstream 1395885 8043565 ~ 8047901 (-) True G91775
unassigned_transcript_1927 other downstream 2308644 7135072 ~ 7135142 (-) True trnag-gcc_69
unassigned_transcript_1925 other downstream 2312571 7131145 ~ 7131215 (-) True trnag-gcc_67
TU135441 other downstream 3053071 6358201 ~ 6390715 (-) False sdccag8
TU136940 other upstream 735413 10185761 ~ 10190510 (-) False LOC122356841
TU137394 other upstream 1474596 10924944 ~ 10935331 (-) True G92819
XR_006252282.1 other upstream 1750598 11200946 ~ 11218985 (-) False rassf4a
XR_006252349.1 other upstream 2075832 11526180 ~ 11531309 (-) False zdhhc16a
XR_006252352.1 other upstream 2321080 11771428 ~ 11799032 (-) False utp25

Expression Profile