RNA id: XM_043254638.1


Basic Information

Item Value
RNA id XM_043254638.1
length 1549
RNA type mRNA
GC content 0.51
exon number 2
gene id six2a
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 6720061 ~ 6722866 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATGACAGCGTAACCATGGCAAATAATTTGACTAAAACTATTGTCTTATCCTCATCATCCCTGGGTCAGATaaccaaccaatcacagttcaCATAATCGCTTTTCTTGCCAGCttagaataatattattaaaacaagagAGCGAGGTCCTTCTTCGGGAGTGCGTTATGCTGAAACGACATAGAAGAGGTGGCGAGAGGCTCGCGCTGGAGGAACGACTTTCTCTCGTGTGCTTTAGATGGATATACGGTGTGTTATGCTTGCCTGAACGGATCTAAAGTTTTGCGCCTCTCTACCCCGGAGCGGGATTTCACTTCGTCTGCTCGAGAAGTCGTTCTAAATTTTTGGTCTCCCAAAGGGTTTGCTTAAAATCTGTCGAAGAACTGCCACCGCCGTCCTTAAAACAGACATAAGATCGAAAAGTGAAGGTTTATTCGCGACAAACCATGTCTATGCTTCCCACGTTCGGCTTTACGCAAGAGCAAGTGGCGTGCGTCTGCGAGGTCCTTCAGCAGGGTGGAAACATTGAACGTCTCGGGCGCTTCTTGTGGTCTCTGCCGGCTTGCGAACATCTCCACAAGAACGAGAGCGTGCTCAAAGCGAAAGCCGTGGTCGCTTTTCACCGGGGAAATTTCAGAGAGCTTTATAAGATCCTGGAGAGCCACCAGTTCTCCCCGCACAACCACCCGAAGCTGCAGCAGCTGTGGCTCAAAGCGCATTATATCGAGGCTGAGAAGCTCCGGGGCCGCCCTCTTGGGGCTGTTGGGAAGTACCGCGTCCGAAGAAAGTTTCCGCTGCCCCGCTCCATTTGGGACGGCGAGGAGACAAGTTACTGCTTTAAAGAAAAGAGCAGGAGCGTGCTGCGGGAATGGTACACCCATAATCCGTACCCTTCCCCGCGGGAGAAGAGGGAGCTAGCAGAGGCAACGGGGCTAACGACAACACAAGTCAGTAACTGGTTTAAAAACAGACGTCAACGCGACCGGGCAGCGGAGGCTAAGGAACGGGAGAATAACGAGAACTCGAACACAAACAGTCACAACCCGTTATCGTCTTCCATGAATGGAAATAAGACTATTTTAGGAAGCTCGGACGACGACAAAACGCCGTCGGGTACCCCCGACCACACCTCGTCCAGCCCGGCCTTGCTCCTCACGTCAAACCCGGGGCTTCAGTCCCTGCACGGCCTCGCGCCTCCACCCGGCCCCAGCGCCATCCCAGTGCCTAGTGCGGACTCCGTGCACCACCACCATTCGTTACACGACACTATACTGAACCCTATGTCATCAAACTTGGTCGACCTCGGCTCTTAAACACGTGGACCCTTTCCAAAGGACGCTTGTACATGAACGTTTAGAGTAAAACATCTCCAGACGCGTATGAAACTAAAGCAAACGAGACGTGGAACGGACAAAGAGAGTTGTGGATGTTTGTCGGCTGACCTCCTGGCAAAGCTGATATGGAGGGCCTTGATAGAGGTATTTTTCTAGAATGTAATGCCATGATCTATTGTTAATAAACATGCTAATAAACGTCTTAATTGTTGATAT

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048793 pronephros development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K19472 SIX2; homeobox protein SIX2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252424.1 lncRNA downstream 16138 6693662 ~ 6703923 (-) True LOC122357105
TU135512 lncRNA downstream 32766 6687077 ~ 6687295 (-) True G91490
TU135475 lncRNA downstream 181693 6536601 ~ 6538368 (-) True G91459
TU135474 lncRNA downstream 220505 6497941 ~ 6499556 (-) False lrpprc
TU135473 lncRNA downstream 222126 6496935 ~ 6497935 (-) False lrpprc
TU135536 lncRNA upstream 64401 6787267 ~ 6787607 (-) True G91513
TU135614 lncRNA upstream 156356 6879222 ~ 6879894 (-) True G91574
XR_006252306.1 lncRNA upstream 294357 7017223 ~ 7045575 (-) True LOC122356287
TU135810 lncRNA upstream 1086994 7809860 ~ 7810104 (-) False si:dkey-191g9.7
TU135853 lncRNA upstream 1255954 7978820 ~ 7980706 (-) True G91758
XM_043256146.1 mRNA downstream 159400 6553488 ~ 6560661 (-) True prepl
XM_043254848.1 mRNA downstream 220488 6453531 ~ 6499573 (-) True lrpprc
XM_043254850.1 mRNA downstream 275613 6433477 ~ 6444448 (-) True abcg5
XM_043255440.1 mRNA downstream 287033 6429382 ~ 6433028 (-) True dync2li1
XM_043256077.1 mRNA downstream 323635 6358512 ~ 6396426 (-) True sdccag8
XM_043255739.1 mRNA upstream 65966 6788832 ~ 6840561 (-) False srbd1
XM_043255740.1 mRNA upstream 65966 6788832 ~ 6840463 (-) True srbd1
XM_043255741.1 mRNA upstream 66287 6789153 ~ 6840561 (-) False srbd1
XM_043255496.1 mRNA upstream 138422 6861288 ~ 6863797 (-) True prdx3
XM_043255493.1 mRNA upstream 144832 6867698 ~ 6871804 (-) True dennd10
TU135441 other downstream 329346 6358201 ~ 6390715 (-) False sdccag8
TU135397 other downstream 494328 6225261 ~ 6225733 (-) False LOC122356805
XR_006252268.1 other downstream 2030893 4672966 ~ 4689168 (-) False LOC122356061
unassigned_transcript_1925 other upstream 408279 7131145 ~ 7131215 (-) True trnag-gcc_67
unassigned_transcript_1927 other upstream 412206 7135072 ~ 7135142 (-) True trnag-gcc_69
TU135889 other upstream 1320699 8043565 ~ 8047901 (-) True G91775
TU136576 other upstream 2392227 9115093 ~ 9115551 (-) True G92267
TU136940 other upstream 3462895 10185761 ~ 10190510 (-) False LOC122356841

Expression Profile