RNA id: XM_043254640.1


Basic Information

Item Value
RNA id XM_043254640.1
length 3946
RNA type mRNA
GC content 0.43
exon number 12
gene id hpse2
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 15797433 ~ 15861462 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCATGCAGCTcctataaacaaatattaaacaaaaaaagtaagctTCAGTTCACTCTCATAGTAAAATCATAAAGAAAAGCTCTCTTTATGATTTTATGCACTGTACAATGCCTAATCAGCTCCAAGCGGTTAGTCACTCTGGCACGGGGACTCTCTCCAGCTTATTTGAGGTTTGGGGGCAAACGGACCGACTTTCTCCAGTTTCATAACCTGAAGAATCTTGCAAAGTTTAGAGGGCCCGGACCAGACTATTACCTCAAAAACTATGAAGACGACATAGTGCGCAGCGACTTCGCTCTGGACAAACAAAAGGGTTGCAAACTGGCCAGCCACCCAGACATGATGCTGGAACTGCAGCGGGAGAAAGCGGCACAGATGCAACAGGTCTTGTTGAAAGAACAACTCTCCAACATCTACAGCGATGTCACGTTAACAGCCAGGTCTTTAGACAAACTTTACAACTTTGCCGACTGCGCGGGACTGCACCTGATCTTTGGGCTGAATGCTTTGCACAGAAACCCTGACAACTCATGGAACGCCTCCAGTGCTCTGAGTCTGCTCAAATACAGCGCCGGCAAAAAATACAACATCTCCTGGGAGCTCGGCAATGAGCCCAACAGTTACCGCACAATGGCTGCCCGATCGGTCAACAGCTCTCGTCTGGCTCAGGATTACTCTCTTCTGAAGACGTTACTGCAGTCGGTGCGTTTCTACAGCCGAGCGAACCTCTACGGGCCCAACATCGGCCGTCCTCGAAAAAATGCAATCCTGTTACTAGATGGgtTTATGAAAAACGGCGGCTCTGTGGTTGACGCAGTAACGTGGCAACATTACTACATTGACAGGCGGGTGACCAAAGTAGAAGACTTCATGAAGACGAGACTTCTGGACACGCTGTCTGAGCAGATTACCAAGGTTTTAAAGattgTTCAGACTCATGCTCCAGAGAAGCGTGTGTGGCTCGGTGGAGTCGGTCCGGCTTGGGCAGGCGGCACCAATAATTTATCTGACACATTTGCAGCTGGTTTTCTGTGGCTGAACACCCTCGGTATCGCAGCGGCTCATGGGATCGATGTTGTACTCCGACATTCTTTTTTCGATCACGGATACAACCACCTCGTCGACCAGAACTTCAACCCTTTACCTGATTACTGGTTGTCTCTGCTCTTTAAACGTCTGGTGGGCCCGAGGGTGCTCGGGGTGCACGTCGAGGGTCTCCAGAGGAAACCACGGCCTGGACGGGTGATCCGGGACAAACTCCGCATCTATGCGCACTGCACCAGCTTTCACAATCACGATTACGTCAAAGGGTCTATAACCATCTACATCATCAACTTGCATCGTTCTCGGAAAAAAATCAAGCTGGCCGGGactttaagaaataaaactgtTCACCAATACCTTTTACAGCCCTTCGGCACAGATGGACTTCACTCCACGTCCGTGCAGCTGAACGGAGAGCCTTTGCGGATGGTGGACAACGAGACGTTCCCCGAGCTCAAGCCACGGACACTCAGGGCAGGAAGAACGATAGCCATGCCACCTGTATCCATCGGCTTCTACGTCATCAAGAACATCAATGCCTACGCCTGCCGCAGATAACACACACCGACCGACCGACCTCAGACCATCCTCATGGCCATAAGCCCACAGAGACGTGGAAAAGACTCCTCGGTCCAAAGCAAGGGTTGCACTGAACGCTTCCAACAACATTTCTCCTCTATTTTGTAACCACGAGAAAAGCTCGACTCGTGGAAAGTGAATGTATTTCGGTTGCCCTCTCGCGCTTTTTTTCCGCGGCTTTCGGGTTGCAGGGGTGTAATGAAGCCTGCTTCACGGAGAGATCCGTAAAACGACGTCGAAGAACAGCGTAAGCTACGAACGGTTCGGACGCGCTGCGGCGATCACGAAGCGGACCGATCAGAATCTGAAAATCTGCGCGGTGGGTTTGAACATGGCGGCACAGATACGACAGCGCCGCCTTCTCACTGGTGGCTAGAAACGTTATCGGATTAGCCGAAATATTCGAACGATGAAAAGGCGCAGGACGCAAGCGACAGCCGTTTTAATTCTGTGGGTGCAGATTCTGTGTGGGCCTGTCTGTCAGCTTAATGTGATTTAGCCGAGTAGGACGTCTTCCCGGATCAACGTCCTCGTTGGTTCTTAAACAGCATTCCAgcttgacagccaatcagattttaaGGGTTAgatttaaggggcttgaatgtTGTCTTTTCAACCAATCATTTTAGAGGTGGCTTACGCTTAGGGCCGCGGGTCTTAGAACTATGATTGCTTGCTGGAAATGTTGTTTCAGGAGCACGGAAAGAGGTCAATCCTGCTAAATCACGTCGTACAAATAACAGTTTGATCTGAATTACATCTCTCCTGTGTACTTTTTTGGACTCTAAAGCCTCTCAAAAGGCACGGGGGCCAGATCTTGATCCGTAATCTTACTTTTTCATCGCGGGACGGTAAATACGAACCTCCTATTTAAAGCCGtctttaaaacttttaacaCTGACCCATGTCCTGAAAAACAGCTTGCGGTCTTGGATTCTCTTTCTGaggttttttggggggtttttttcgGTTCAGTTGCTGCTTTACGATTTCAAACTGTACGACGATGAAGGTACTACGGGAAGATATATAGATATTCGCTAAAGAGTCCTTACGTTTTATTTGCTAAATTAGAGAGAATAAACACAACATCTTCTTTTTGCAATCTTGAGAAATAcagctttatatttataatgtttacatGTTTGATTTCCCGTTGTAGCTCAGACTCTTTTGAAGCTGAAAAGGAAAGAGTAGGGAGTTTTTGAAGGCATCGTTTTGCTTTATGAAGAACCGTGTAGCTCAGGAAATTAGCTTGTCCGTgtccaaagcatttttttttattttcgctATAACATTGTGAACCTGAGCTTAGTTAGCCAGATTTCTTCTGCTATATTAACACTACCTTACTGGGTGTTGATACTGGGGTCCTAGAAGGTGTTAGACAATTAAGCGacacttaaaatatttgaatagacAATATTTCAAgtggtatttatatttttcagcgattcattacacaaaaataaataattattaaattagtcaaattatttaaaaagtaattgcaaAAATGGCGATTATCgtacattctaaaaaaaataccatttagttatatattttcatgaagTGTTGTGCATATAGTTTTAGGGCCTCTATAAATCCCATgtacagcgattcatttttgcTGCTAGCTGCCTTATTAAAATTAAGCATGTTGAGAGactaattttttttgtacaggtacaaacctttttttataataataaatgtacatacagttgttttttttgatttaaaccGTGTGCTTCCTTGctctataaatattatttatataaatgtatgtgtgtgtttatggttgtgtgtgtgagtgtttatgtgtgtataaaaacaGTTGACTTTCGTCCACATTGGCAGATAACTATATTGTACTTTTTGTAAATCATACAGCAGAGATTGAAGCTGCCCTTTGAATTTCAAATGTATTGAGTTGCTCACAGTATGCACACTTGTGTATCGCGGTGTTTTACATTGTATATGCTTTGGTCACTTACTcgcaatgcaaaaaaagtaaagaaataaagaaaaaaaatgacagaattcatACGTGAATTCTGTAAAAAGTCTCCCTCCCTCTCCTCGGGCTCGGTCATGATAGAGTTAGATTTTCCAGGGtcaataattctgtcatcatcgtGATATTTCCTTAGACTTGGAAGATTCTGTTGTGAGTTTAAAGATATATAGGGTCTTAAATTTGTACAATGACACTTTCACAAGCTATTTTCCTCCTTGAATGTGTTTATTGCAAATTTAGagttgttaatattttttcagttaaagagcattattttattatggaaATGGTTGtctgaatatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139336 lncRNA upstream 11859 15774767 ~ 15788230 (+) False G94176
TU139337 lncRNA upstream 20648 15774767 ~ 15779441 (+) True G94176
TU139334 lncRNA upstream 25694 15773969 ~ 15774395 (+) True G94175
TU139333 lncRNA upstream 35515 15764340 ~ 15764574 (+) True G94174
TU139332 lncRNA upstream 38122 15761692 ~ 15761967 (+) True G94173
TU139357 lncRNA downstream 12809 15874271 ~ 15876091 (+) False G94186
TU139362 lncRNA downstream 12809 15874271 ~ 15876678 (+) False G94186
TU139363 lncRNA downstream 12809 15874271 ~ 15876678 (+) False G94186
XR_006252301.1 lncRNA downstream 37409 15898871 ~ 15914946 (+) True LOC122356273
TU139426 lncRNA downstream 40287 15901749 ~ 15901956 (+) False nkx1.2la
XM_043255334.1 mRNA upstream 26544 15764954 ~ 15773545 (+) False got1
XM_043255333.1 mRNA upstream 26544 15766275 ~ 15773545 (+) True got1
XM_043254818.1 mRNA upstream 76346 15714193 ~ 15723743 (+) True slc25a28
XM_043256128.1 mRNA upstream 192208 15581868 ~ 15607881 (+) True golga7bb
XM_043256050.1 mRNA upstream 481912 15314814 ~ 15318177 (+) True LOC122356934
XM_043255686.1 mRNA downstream 3377 15864839 ~ 15871816 (+) True hps1
XM_043255736.1 mRNA downstream 16052 15877514 ~ 15888102 (+) False ankrd2
XM_043255735.1 mRNA downstream 16052 15877514 ~ 15888102 (+) True ankrd2
XM_043255734.1 mRNA downstream 16052 15877514 ~ 15888102 (+) False ankrd2
XM_043254802.1 mRNA downstream 40078 15901540 ~ 15904909 (+) True nkx1.2la
XR_006252400.1 other upstream 485810 15295849 ~ 15314279 (+) False tarbp1
XR_006252370.1 other upstream 524855 15255074 ~ 15275234 (+) False fam135a
XR_006252421.1 other upstream 573906 15106458 ~ 15226183 (+) True LOC122357077
XR_006252357.1 other upstream 1432954 14354116 ~ 14367135 (+) False frmd6
TU138522 other upstream 1890486 13739607 ~ 13909603 (+) True G93613
XR_006252368.1 other downstream 3377 15864839 ~ 15870625 (+) False hps1
XR_006252369.1 other downstream 3377 15864839 ~ 15869803 (+) False hps1
TU139358 other downstream 11982 15873444 ~ 15877422 (+) True G94186
TU139356 other downstream 12809 15874271 ~ 15876678 (+) False G94186
TU139427 other downstream 42484 15903946 ~ 15904349 (+) False nkx1.2la

Expression Profile