RNA id: XM_043254643.1


Basic Information

Item Value
RNA id XM_043254643.1
length 1582
RNA type mRNA
GC content 0.42
exon number 10
gene id snapc1b
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 14601464 ~ 14606081 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAATGTGAGCGAGACGAAAACTCAAACAAACTCACAGAAGGTGGAGAAGTCCAGCAGCAGTGCTGTTTTatctctttttaaaacataagcAATGGATGCTTTGTGGTGATTACTAGGCAGGATGGATCATTTCAGGGAACCGGTAAAAACAGACTGTGAAGAACTACTGGGTCGTTTTCAGGCGACCGAGTCAGTTCGGTACGAGCAGTTTGTAGAGATCTGGAGAGACATGGATTTCAGCAGCATCTTCCACGGTAAACCGGAGCCAAATGAGAGAAGGCACTTCGCTCGTCTGATTCTGTCTGTGGTGTCCCCATACTTTTTTCCTCCATACACGTTCCAGATCAGAGTGGGGGCCCTTTATCTTCTGTACAGCCTCTTCAACACACAACTCGCCACACCTAGAGAGAAGATCCGCATTGCTCTGAAGGACTGGAAGGATGTTATGCAGTTTCAGAAGGACGCAGTGAATGCTCAACATTACGATGTGGTTTACGTCTTCAGAAAGCTCTTGTCAGATAAAGCTTTCTACTTCACTGCCATGCCAACACCGCTCAATTTCAGGATAAAGAGGGAAGatggaaagaagaagaaaatctgTGAAGAGTTTGTTGATCCGCCAACACGTCCTCAGGAAGTCGTAACCACAGATGTACTAGAGGAAATTGCAAATATCCACGAACATTATGAAGGTGTGAAGAAAGCCATTTTCGCTGAACCAGACCCAAATCTGAATATTGTACAGCAAAACCTGATTCCCAAACTAAACAGTGCCATCCTCACTTATTCCAGCTGGCAGATGAATCGTACAaCATCCGAGCAGCAGGATGCTGGAGAAGGGCCTTCAAATCAAGAAAGCTCCAGCAGAGCCCAGCTGTTAGCGTCGATCAAATCCAAATCATATGGACAAGTCGTAGAGGCTTCAAAGGCCCGAcgtcacagacagacagaattgGTCTCAGCAGCTGGACCAGACATTGCGTTAAATGTgccttcaaaaaagaaaagattccCGTCACTTAAAACGCGCACTCAGTTACGATTCAGAACTCAGGGAAATGAGAGTGAGGGCTCAAATTTGACCCGACTGTGGTGTTTGAGTTCAGTGAAAGAAGAGATAGAACCAGaaaaaaagaagagaaaattcAACTGGAACCCTGACAAAAGCAGCGATCCCACATAGCATTAGTCAGAGCCGTCTGGATGGAGTGTGATGGGCGGGCCGCCTCGTGTTAAAAGCTAGTGCGATTTGTGCTTTGAGCTccagtttcatttaaattgttttatgtaattGTAAACGTTGCTGCTTTTGGGTTAAAAGGGCAGTGAATGTAAGTTGCTTTTAAGACAgctctttcttctttttgtacTTTAGTATTTGGCTTTAATGTGAAATTAGTTTAGTGttctttaatagtttttagATCAACGCGTTCTTAAGCAGCTATTTAAAATGGACagtttctacattttattttcttttaaatgattttaatgatttagtcATTCtgaatcttttttgttttagtctaCTTTCTTTCTATTGTGCCAGCTAATACATCTCTCACACATCGAGAAAAGA

Function

GO: NA

KEGG:

id description
K15208 SNAPC1; snRNA-activating protein complex subunit 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138967 lncRNA downstream 411560 14187539 ~ 14189904 (-) True G93905
TU138968 lncRNA downstream 411560 14187539 ~ 14189904 (-) False G93905
TU138970 lncRNA downstream 411560 14187539 ~ 14189904 (-) False G93905
TU138971 lncRNA downstream 411560 14187539 ~ 14189904 (-) False G93905
TU138913 lncRNA downstream 696762 13903754 ~ 13904702 (-) False LOC122356386
TU139118 lncRNA upstream 266351 14872432 ~ 14873014 (-) True G94003
TU139135 lncRNA upstream 374915 14980996 ~ 14995700 (-) True G94016
TU139147 lncRNA upstream 419631 15025712 ~ 15036994 (-) False lmbrd1
TU139165 lncRNA upstream 621433 15227514 ~ 15231255 (-) False col9a1b
TU139177 lncRNA upstream 638450 15244531 ~ 15248584 (-) False col9a1b
XM_043256038.1 mRNA downstream 1201 14576907 ~ 14600263 (-) False syt16
XM_043256037.1 mRNA downstream 6598 14576907 ~ 14594866 (-) True syt16
XM_043256036.1 mRNA downstream 6831 14576907 ~ 14594633 (-) False syt16
XM_043255572.1 mRNA downstream 25116 14563389 ~ 14576348 (-) True sgpp1b
XM_043255257.1 mRNA downstream 39086 14557244 ~ 14562378 (-) False wdr89
XM_043256029.1 mRNA upstream 1299 14607380 ~ 14608640 (-) True ifi27.1
XM_043256026.1 mRNA upstream 4266 14610347 ~ 14613352 (-) False LOC122356918
XM_043256027.1 mRNA upstream 4266 14610347 ~ 14613345 (-) True LOC122356918
XM_043256025.1 mRNA upstream 8140 14614221 ~ 14615925 (-) True LOC122356917
XM_043256028.1 mRNA upstream 10718 14616799 ~ 14618999 (-) True LOC122356920
TU138948 other downstream 437116 14160323 ~ 14164348 (-) True srsf5a
TU138949 other downstream 437116 14160323 ~ 14164348 (-) False srsf5a
TU138950 other downstream 437116 14160323 ~ 14164348 (-) False srsf5a
TU138946 other downstream 518706 14079532 ~ 14082758 (-) True LOC122356235
TU138915 other downstream 689627 13910339 ~ 13911837 (-) True G93875
TU139176 other upstream 634669 15240750 ~ 15242797 (-) False col9a1b
TU139178 other upstream 644494 15250575 ~ 15253281 (-) False col9a1b
TU139278 other upstream 958536 15564617 ~ 15583917 (-) True G94128
TU139299 other upstream 1035950 15642031 ~ 15642503 (-) True G94147
TU139376 other upstream 1146566 15752647 ~ 15755060 (-) True nkx2.3

Expression Profile