RNA id: XM_043254656.1


Basic Information

Item Value
RNA id XM_043254656.1
length 4511
RNA type mRNA
GC content 0.45
exon number 13
gene id epas1b
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 4549100 ~ 4583499 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACGTAGACAGACTGATGGACAACTGGTATCTGAAGTCACTGGGCGGCTTCATTAGCGTGGTAACATCAGACGGAGACATGATCTTCTTGTCGGAGAACATCAACAAATTCATGGGTCTCACTCAGGCATGGGAAAGAAAGGCAAGGAGCTGAGCACAGAGAGGGATTTCTTCATGAGGATGAAGTGCACCGTGACGAATCGCGGGCGCACCGTTAACCTGAAGTCCGCGAGCTGGAAGGTGCTGCACTGCACGGGACACCTGAAGGTGTGTAGCGGCTGTCCCGCGCGAGTGCTGTGTGGATTTAAAGAGCCGCCGCTCGCCTGCGTGGTCATGATGTGTGAGCCCATCGCCCATCCATCAAACATCGACACGCCGCTCGACAGCAGGACCTTCCTGAGCCGCCACAGCATGGACATGAAGTTCACTTACTGTGATGACAGAGTTACCGAGTTGATGGGTTACAGTCCTGAAGATCTCCTGGGCCGGTCGGCGTATGAGTTTTATCATGCTCTGGACTCCGACAGCGTCACCAAAAGCCACCAGAACCTGTGCACTAAGGGCCAGGCGGTGAGCGGTCAGTACAGGATGTTGGCTAAGAGCGGGGGCTACGTGTGGGTGGAGACCCAGGGTACCGTCATCTACAACAGTCGCAACTCCCAGCCCCAGTGCATTGTGTGCGTGAACTACGTGCTGAGCGACGTTGAGGAGAAGGCTATGATCTTCTCTATGGACCAGACCGAGTCTCTGTTCAAGCCTCAGCACTTGAACCGTTTCTTCAGTCCAAGCGAAGGAGGCCTGGGCAGCGAGCCAGGGGAAGCGCTCTACACCAAACTCAAAGAGGAGCCCGAGGATCTCACCCAGCTCGCACCCACACCTGGTGACACCATCATCTCTCTCGACTTTGGTAACCCTCAGTACGAGGAGCACACGATGTACAGCAAAGCTTCTTCTGTCGCTCCTGCCGTCTCTCGCTCCGTTCACGACGGACACAAGGCGAGCTACGCTGGAGACATGGCCAAGATGGCCGCCACTTTCTCTGTGCCCCAGGCTCCGCCGGCCAGCAGTACAACTCCCAGCCTGAGCAGCTGCTCCACGCCCAGCAGCCCTGGAGATTACTACACCTCAGTGGACAGCGACCTGAAGGTGGAGCTCACCGAGAAACTGTTTTCCTTGGACACACAGGAGACAAAGACCTCCTGCAATCAAGAGACTGACCTGAGCGATCTGGACTTGGAGACTCTGGCTCCCTACATCCCAATGGACGGTGAGGACTTCCAGCTCAATCCCATCTGCCAGGAAGAGCCGCCGTCCGAGATCGGGGCCCTGGGAAGCAACCAGCAGAGCTTCAGCAACATCACCAGCCTCTTCCAGCCCTTGAGCTCCCCTTCAGCCGCCCACTTCCAGGCCAACATGAGCTCAGGAGGGGACAAGCAGAGCATCGGCGGAGGCTCTGTGGAGTCCTGGCCGTCTGTGCCCTACAGCAGGGGCCCCATGCAGATGCCTCCCTACCATGACCCGGCCAGCACCCCGCTGTCCTCTATGGGAGGCCGTCAAAACCTGCAGTGGCCGCCCGACCCTCCCATACCCAGTAAGGCAGGAATGATGGATCCTTTAGCTGCAAAGCGCTCTTGCCAAACTGTGCCAGCAAATCACATGCCGTCTTATCTGCAAAGGCCCATGGAGAGCTTTGTGCAGAACTACAGAGATTTAAGTCCAGCTCGACTTTCCGTCGCCAACAATTTCAAGCGCTCGTTCACACAGATGACGATGAGCGAGCCGACCCCCTCGAAAGCACAAAGCGCCATGTGGAAGAGACTTCGGAGCGAGAGCTGTGCCGTCATGGACAGAAAATCCCTCAGCACCAGCGCTTTGTCAGACAAAAGCATGGCCCCTGACGGAGGCATGGACCACCAGCACAGGAAGACTCAGTATACGGGGAATCAGGTGACGAAGCGCTTTAGAGAAGAGTGCTGTAACTACAGAGAGTTCAGCATGCAGCCTTCCTCCAAGATGAATGGAATCGCCAGTCGACTGATCGGGCCCTCCTTCGAGACCTACTCTCTGCCTGAACTGACGCGTTACGACTGCGAGGTCAACGTCCCGTTGCAAGGAAATCTTCACCTGCTGCAGGGCAGTGACCTCCTCAGAGCGTTAGACCAGGCCACTTAGAGCCCCCTACGGCTCACCTCACACTCGCCATCCCGACAGTAACCTCCCCAGCTTTAGCGCGTCCCACAAACCCCCTCTCACAGTCACGTCTACCCGAGCGCGTACATGACAAATGTAGCTTTGATTCTATTTTTATTGTCTGCATCttcataaattatatacatgtactATTTTTTTAGTTACAAGGCGGTTTCGGAAtgaatttaagtattttttggAGGAGCTGAAATGATGTTACGGCAAAGCTGTTTTTAGCATACTCTCCTTTTTTCTCTATcaatgtcagaaaaaaaaaaaaaagaagaaaaaaaagtatctacCGTAAGctacttgttttaaaatgttctcatttctttcatttgttctAACTTTCCTACCTCTGACACATCGTTAAAGACCCCATGAAATCAAAAGGCTAGTTTTGAGCTCACCTATACGCTAACGCAGGTTCTTCCCAAAGAcgttttattaagttatttacTCTGCATTAACAATAGCTGCTCTTCATACATGTGCTGCTGTCTTTTCACTCGCACAAACACGTTCAAGGGTTGCCAGATTTCACAAAAAGCATCCTGGTCTAATATATACGGCGACCCCAGTTATTATGCTTTAGGTAGATAGTATTCTCAAAACAAGCCCCCTAAAATGAATATGACGACACTTAAagtctttatgtataatgcattataaaagtatgcaccatatgcatttttaattcggATGCAATTATTCCCATGTGGATGTAGTGTATTACAATGCACATAATTGCAATGCATTATACCCTTTAATAatcctttataatgcattatgcataaagTGTTAGCTTAGATCCCGCTCAGTTAAAAagcaattgtatttattatgaataaatcaaatattatttaaaaaagctatGAAATCAATATGATGTGCAGACATGgcaaattgattaaattaaattgtacaaaatgaaaaaactatttaatttattatgaaaacatattttatttaaaaatcactaaaatgacattgcattataaatcactattttcttttttgtttcgtttcgtTTTGCTTTGAAGCTGTGCTGGCAACCACTGCGCTAGTGTACTCCTGAAAGCAAGCGCAATTAATATTTGTCACGCATACTTTAAAATggtaatgcatttaatgttgtAATATTTCGTTCAGtcaaattctgaaataaaagtcaCCTTTTCTCTGCAGTCGTGGTTagcctgctaaaaaaaaaaaaacccaaaaaaacaaaaacatttgaataaagaAAAGCGTTTCATGGGGTCTTTATGCCTTGTCCTCACTGACCACTTTCAGTGTTCGTGTTATTCATGTGCCTTTCTTCGTTTGATTAGTTGCAATACCGTGTTTCTGTCTCTGATCTCTGTTTATTGCCTTATTGTGGAGAccactttaaaaacatatatatttttgtcaatttagctgtaaacatacatatttaaaggaagatgctctaagatttctactatAGATTTCTACTTTGATTATAAAGTTAAGCATTTATTTGTCCTGGTACTTTGTCTTGTCTACTCAGTAGATGTGAATCAGAGTCCTTATCAAGTCTGCAGTGCTGGTGTCCTGTGCTCTTTCTtggtggcattttttttttttctggaaatatgcaaatgcatatCACAATTATTGGCAGGCCAGTACAGTTGGttaaaaattggaaaaaagagggttttttttaaatgaaagacattttattaGACATGTTATGTAGCATATTGGATCCTTAAAAAGAGTTTAATCTTAGTGATTTCTTGCGTTGTATAAAGATGACCCGTATTAGATTAATAACATTAActctctttttatttgaattgccCTGAGGTTGTCTTTAAAGTTGAATCATAAAGGATCTAAATTATTTCTTACAATGTGTAGTAATGTAGCGACAACTGTAGACGAAGATGATTCTTTTGCTTAAACACATATTAGCACTTTAGATTCAATGTTAATCTaaacccctttaaaaaaaataaataaaaaaaattaaaggtacAAAGATGAGGTTTGGCACGCAATCCAGTTTTTGAAGTGGGGTTTTTGTGAGCAGACTGGAGATGCGTTGCTCAATGTTGGAGCTGCCGTGCGAGATGctatcagagagagagagaggctgtgcACAACTAAACAAAGCTAATTCAGCATAAGAGCGAATGCCCAAAACATGTCCGggaaaatgaatcaaattataTCATAGGATAATAAGACATATGCATGGTTTCAGCCATGTTAACATTTTCTTGCATTAGTTTTGTTACAGCTGCCCCCAAAACTAACAattatctttgttttaaaaaagaccaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134306 lncRNA upstream 95497 4471065 ~ 4471744 (+) True G90700
TU134305 lncRNA upstream 95497 4471416 ~ 4471744 (+) False G90700
TU134231 lncRNA upstream 101373 4459639 ~ 4465868 (+) True G90659
TU134238 lncRNA upstream 213310 4352619 ~ 4353931 (+) False G90660
TU134314 lncRNA downstream 309 4583808 ~ 4625544 (+) False si:ch211-250c4.5
TU134323 lncRNA downstream 42104 4625603 ~ 4695842 (+) False si:ch211-250c4.5
TU134586 lncRNA downstream 381203 4964702 ~ 4965015 (+) True G90888
TU134562 lncRNA downstream 419911 5003410 ~ 5013662 (+) True G90879
TU134605 lncRNA downstream 451860 5035359 ~ 5036116 (+) True G90905
XM_043255803.1 mRNA upstream 19732 4474420 ~ 4547509 (+) True prkceb
XM_043255801.1 mRNA upstream 19732 4474427 ~ 4547509 (+) False prkceb
XM_043255260.1 mRNA upstream 126171 4438451 ~ 4441070 (+) True mcfd2
XM_043255631.1 mRNA downstream 12149 4595648 ~ 4607089 (+) True dhx57
XM_043255637.1 mRNA downstream 29143 4612642 ~ 4622799 (+) False atl2
XM_043255638.1 mRNA downstream 29291 4612790 ~ 4622799 (+) True atl2
XM_043255639.1 mRNA downstream 29720 4613219 ~ 4622799 (+) False atl2
XM_043255635.1 mRNA downstream 39439 4622938 ~ 4626452 (+) False si:ch211-250c4.5
TU134239 other upstream 323200 4182499 ~ 4244041 (+) False G90660
TU134245 other upstream 323200 4182499 ~ 4244041 (+) False G90660
TU134242 other upstream 323200 4241132 ~ 4244041 (+) True G90660
unassigned_transcript_1924 other upstream 495342 4071806 ~ 4071899 (+) True trnai-uau_4
XR_006252399.1 other upstream 737500 3809053 ~ 3829741 (+) False pkdcca
TU134595 other downstream 408828 4992327 ~ 4997896 (+) False si:ch73-49p17.1
unassigned_transcript_1926 other downstream 2547927 7131426 ~ 7131496 (+) True trnag-gcc_68
TU135767 other downstream 3252691 7836190 ~ 7838941 (+) False chchd1
XR_006252298.1 other downstream 3275199 7858698 ~ 7881483 (+) False zswim8
TU135961 other downstream 3722987 8306486 ~ 8310824 (+) True G91833

Expression Profile