RNA id: XM_043254658.1



Basic Information


Item Value
RNA id XM_043254658.1
length 1033
RNA type mRNA
GC content 0.46
exon number 6
gene id zgc:123321
representative False

Chromosome Information


Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 5076696 ~ 5079826 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TCATGCACACATACAGCAAAACAGCTGCTCGGTGACCAAGCAAAGACTCAGTACAAGATCTTCAAATCAAACCCTGACTTTAAAGAAGGTAAGAAGGCAGAATGGGAGACTTTCAAAACTTTGAACAAGACTTCTATCAGTCTGGATATTATATGGATGGACAGCAAGAGGATGCATATGGCTATGATCCAGCCTACGTCAATCCAGACTATAATGAAGCCGATAATTCCACACATTTAGCAAATGAATACACCACTACGGCATCTTATACCGGACAGGTGTATCAGCCTGGAGCGCCACCGGAGCAAACAGAATATATGGACTCATACGAGGAAGAACCACCGCTCCTAGAAGAGTTGGGCATTAACTTTGACCATATCTGGCAGAAGACTCTGACTGTGTTAAATCCACTGAAGCCCGCGGATGGCAGTATTATGAATGAGACAGACCTCACCGGGCCCGTTCTCTTCTGCGTTGCACTGGGAGCCACATTACTGATGGCAGGGAAAGCACACTTTGGGTATGTGTATGGCATCAGTGCTCTGGGGTGCGTGGGGGTGTACATGCTGTTGAACCTGATGAGCAGTTACAGCATATCCTGTGGATGTGTGGCGAGTGTGCTGGGATACTCTCTCCTCCCCATGGTGGGACTCTCTGCCTTTGCTGTTCTGTATTCCCTTCAGGGGCTCTTGGGAACACTGTTGGCCTTGTTTGTGATTGGCTGGTGCAGTCTATCAGCTTCTAAGATCTTCAGCTCCACTCTTGACATGAGTGGGCAGCAGCTGCTGGTGGCCTATCCCTGTGCTCTCCTGTACGGGGTCTTCGCTCTCCTTACTGTCTTCTGAAAGCTATTCTCGACAACCGTCTCTCTAAGATCAGATGATCAAATCCAGTTGCACGTAATTCACAGCTTGTCACAGTTGCTGCAAATGAAGGTTACTTTACAATTTTGTCAACAAAACTCGAGCTgggttttcaaaataattttgatattggaatgcatgcaaaaagaaaatgtaataaaaaggttggt

Function


GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU134803 lncRNA downstream 111737 4964602 ~ 4964959 (-) True G91025
TU134800 lncRNA downstream 117285 4958383 ~ 4959411 (-) True G91022
TU134515 lncRNA downstream 243552 4829751 ~ 4833144 (-) True G90846
TU134506 lncRNA downstream 325728 4750432 ~ 4750968 (-) True G90842
TU134496 lncRNA downstream 378084 4690885 ~ 4698612 (-) True col13a1
XR_006252371.1 lncRNA upstream 48699 5128512 ~ 5129707 (-) True LOC122356716
TU134865 lncRNA upstream 50538 5130351 ~ 5130949 (-) True G91066
TU134900 lncRNA upstream 181252 5261065 ~ 5262123 (-) True G91085
TU135101 lncRNA upstream 651443 5731256 ~ 5732678 (-) True G91210
TU135120 lncRNA upstream 843444 5923257 ~ 5923759 (-) False metap1
XM_043255796.1 mRNA downstream 2741 5070925 ~ 5073955 (-) False pomk
XM_043255797.1 mRNA downstream 2756 5070925 ~ 5073940 (-) False pomk
XM_043255794.1 mRNA downstream 2777 5070925 ~ 5073919 (-) False pomk
XM_043255795.1 mRNA downstream 2777 5070925 ~ 5073919 (-) True pomk
XM_043255793.1 mRNA downstream 6503 5064298 ~ 5070193 (-) False wdr32
XM_043254662.1 mRNA upstream 635 5080448 ~ 5085525 (-) True bbof1
XM_043255611.1 mRNA upstream 6024 5085837 ~ 5097829 (-) False alms1
XM_043255610.1 mRNA upstream 6024 5085837 ~ 5097818 (-) False alms1
XM_043255608.1 mRNA upstream 6024 5085837 ~ 5097818 (-) False alms1
XM_043255609.1 mRNA upstream 6024 5085837 ~ 5097818 (-) False alms1
XR_006252267.1 other downstream 387528 4672966 ~ 4689168 (-) False LOC122356061
TU135397 other upstream 1145448 6225261 ~ 6225733 (-) False LOC122356805
TU135441 other upstream 1278388 6358201 ~ 6390715 (-) False sdccag8
unassigned_transcript_1925 other upstream 2051332 7131145 ~ 7131215 (-) True trnag-gcc_67
unassigned_transcript_1927 other upstream 2055259 7135072 ~ 7135142 (-) True trnag-gcc_69
TU135889 other upstream 2963752 8043565 ~ 8047901 (-) True G91775

Expression Profile