RNA id: XM_043254662.1


Basic Information

Item Value
RNA id XM_043254662.1
length 1839
RNA type mRNA
GC content 0.46
exon number 12
gene id bbof1
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 5080448 ~ 5085525 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACAACAGGCGTACACAAACTAATCCTGAGGGGAGATCGTTGAACGGCGCCGATAAAAGCACAAGAAATGCCggttaaaaaaggaaagaagggaaagaaagcaaagggaaaaggaaagaaagatggCAAGCAAGAGTCAAAGCGAGATAAGGAGTCTGATGTAGAGAGGGCGAAAGCAAACGCGGCTCTGTGGGAGGCCAGGTGTGATTTGACGGAGACTTCGCGCGTGGAGTACCGTGAAGCGGCCCGAAGACTGAGCAAAATCAACCAGCAGCTCACTGATGTACAGAACAACACTGAGAAGAGCAGCATCGAGGTCATCGCTGTTCTCAGGAGCAAAGACGTGAAAAACGAGGAGAAGATAATGGCACTGGAACAACAAATAAAGCTCGAGAAAACAAGGGCTTCTCAGGAAAAGGTGAATTTGGCCTCTCAGTACACGCTAAAGATCAATGAGCTGGAGGAGAAGTTTCAGAAGAGGTCTAGCGAGTTTGACGTCATTCAAGAGGAGCTTAAGATCATCAATGACTTCCTTAAGAAAAAGCCTCAAATGGAGCAGGAACTCAAAAATATGAAAGAAACTATGGACAATGCAGATCTAGAACACAAGAAAACACTTGCAAGAATGGAGCAAAAGTTCTTCAATAATAAGGTTCATCTAGAGAAAGAAGCGGAGCAAAAGATTGCTGTGCTTGCAGAAAGAGCTCACAATGAAGCCATCATACAGCTGGATGACGCATCTCGCTCGATGTTCAAGGAGAATGTGCGTCTCAACAAGGCATTGGGTTACCACATCAAAGAAGTGGAGGATCTGCGGAAGAGAAATGCAGCGCTAGCAGAAGAGAACAACATCCTTAGTCTGCAAAAGGAGATGAGTCTGGACACCTCAAACGAGACCGTGTCTAAGCTTGCAGCCCAGCGGAACACAGTCTCTGGTCTGAGGGCGAAGGTGTTCACACTGGAGCAGGCCTTGGCCAGCATGGTATCTGAGTTTGAGTCGAAGAAGGCTGATATCAAGCAGCGTGCTGCTGTCCGGTCTCAGGCCGGCGGTGTGGAGCTGGACAAACTGCAGAAGCTCCTGAGCGTACGGGACAGGGAGCTGAGTCGAGTAAAGAGAATAGCCCGCAGCGCAGTGGAACAACGCTCAGACATGGAGGTCCTCTTCCATGAGGCTCTGAACCACGTGAAGCAGGAGATGTTGATGCACAGGCAGGAAGCGGAAGTGAATCGTAGCAAGCGGATGGATGAGATCCTATCAGGCAGAGCGGAGAACGATCACATTCACACCATCAACAAAACATCCCACAGCACTTCCAGTGGTACAGATGGGGCTGAAAAAGGCCATCTGAAGAAAGCCAAAGTGAACATATCAGAGATGACCTGGGATCAAAGAGAGAGAGTTCTTAGACTGCTCTTTGCTAAAGTGAATAGCTTGAAATCAAaGAAATCGATTCATGCTCCAGCTCTGACTGATTCTGAAGGGAACCGGTGTAGCAGCAATCCAGGAAATGAAGAAGAGGAATCCCATGCGACTTTTTTGACCCAGGCGGCAGTTTCCAGCATGAGCTCCAGTGGAAACTCCAGTGCTCTGCCAGACCTGTAGACCATCTGAGCTCATCACGAAGTATAAGTTAAACGTTGCGTATCAGCTATGAAATACCAGTAAGTGTTCAGAAGTGTCTAACCTACAACTCAAAAAACCTGCCGTGGCATTGAAGTTTAGACATGAGGGAATATTACCAAAATAAGATTAACGGAAGACTTAAAATGTCTTGGAATAAATACACCCacaatatattgcaaaaaaaacaaacaaatcaaacagtatttattataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134803 lncRNA downstream 115489 4964602 ~ 4964959 (-) True G91025
TU134800 lncRNA downstream 121037 4958383 ~ 4959411 (-) True G91022
TU134515 lncRNA downstream 247304 4829751 ~ 4833144 (-) True G90846
TU134506 lncRNA downstream 329480 4750432 ~ 4750968 (-) True G90842
TU134496 lncRNA downstream 381836 4690885 ~ 4698612 (-) True col13a1
XR_006252371.1 lncRNA upstream 42987 5128512 ~ 5129707 (-) True LOC122356716
TU134865 lncRNA upstream 44826 5130351 ~ 5130949 (-) True G91066
TU134900 lncRNA upstream 175540 5261065 ~ 5262123 (-) True G91085
TU135101 lncRNA upstream 645731 5731256 ~ 5732678 (-) True G91210
TU135120 lncRNA upstream 837732 5923257 ~ 5923759 (-) False metap1
XM_043254657.1 mRNA downstream 622 5076697 ~ 5079826 (-) True zgc:123321
XM_043254659.1 mRNA downstream 624 5076696 ~ 5079824 (-) False zgc:123321
XM_043254658.1 mRNA downstream 635 5076696 ~ 5079813 (-) False zgc:123321
XM_043254660.1 mRNA downstream 644 5076696 ~ 5079804 (-) False zgc:123321
XM_043255796.1 mRNA downstream 6493 5070925 ~ 5073955 (-) False pomk
XM_043255611.1 mRNA upstream 312 5085837 ~ 5097829 (-) False alms1
XM_043255610.1 mRNA upstream 312 5085837 ~ 5097818 (-) False alms1
XM_043255608.1 mRNA upstream 312 5085837 ~ 5097818 (-) False alms1
XM_043255609.1 mRNA upstream 312 5085837 ~ 5097818 (-) False alms1
XM_043255607.1 mRNA upstream 312 5085837 ~ 5097818 (-) True alms1
XR_006252267.1 other downstream 391280 4672966 ~ 4689168 (-) False LOC122356061
TU135397 other upstream 1139736 6225261 ~ 6225733 (-) False LOC122356805
TU135441 other upstream 1272676 6358201 ~ 6390715 (-) False sdccag8
unassigned_transcript_1925 other upstream 2045620 7131145 ~ 7131215 (-) True trnag-gcc_67
unassigned_transcript_1927 other upstream 2049547 7135072 ~ 7135142 (-) True trnag-gcc_69
TU135889 other upstream 2958040 8043565 ~ 8047901 (-) True G91775

Expression Profile