RNA id: XM_043254670.1


Basic Information

Item Value
RNA id XM_043254670.1
length 2494
RNA type mRNA
GC content 0.43
exon number 3
gene id gdf10a
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 11477208 ~ 11480996 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCAGCGCCTCACTCCGCTTATTCCTGCTCTCGTGGATAGTGGCGGTCAGAGGAAATAAGGGATGTATCACAGGTTACGCACGAGACCGACACAACTTCTTAAACATTGTAACAACTTTCTCTCCGCGCTGCGTTAAAAGGCGGGAAAAGCGGCGACTTGACAAACCGCATCACTTGAAAACGCCACTCCGAAGTTGTCATACTTGAAACCTCGTTTTAGTATGTGCTAGCGCGTTTTTAAGCTACGTGGAATTCAGTCGTTCGGAAGGTTCTGTTTCTTTGCAACATGACGgttaaatgtgtctttttaaCGCACCTGTTACTGCTTTGGGTCGGTTCCGATACTGACGCGTCTGAAGCTGTTTGGAGAAGTGCGCGCGACAGCACGACAGACGCGCTCGTGCCCACTGATGCGCTCTCACAGCATATGTTTAAACTGTATGAGAAGTACAACATTGAACCTAACCGACTCAAAGAGGGAAATACTGTAAGaagttttaaagcaaaaccTGAGAATGTGGAGGAGAGGGTCTCGTACTGGTTGAATCTTACTTCTCTTCAAGGGTCTGAGGTGATCCTCACATCTACGTTTCACTTCTTTTTTGACAAACGGCCACGCCAGAGGTCCTGGTTCTGCAAGCGCTTCAAGAACCCCTCTTGTCGCACCCCAAACGCACATCTGCTACCATCTGTCCGTCTTCTTTTCCGGTCTCCCTCCTTCAGCTCAGCCCCAGGATCTCTACTCGGAAACATCACCATAGTTCCTCATAGACGTGGGACCTGGCAGAGCAAGGATGTGTCTGTCATTATAAAAGAGGCCCGAGATAAGAATCACCTTTTGATCACTGTGGAGTTTGACTACGGAGAGCAGTATCAAAGGTATCAGGACCAGCTTCCATCCTCCAGCCTTCCATACTTGCTGTTGTATGCTAATGACCTGGCCATTTCCGAGCCCAACAGCGTGGCCGCGAGCCTACAGAGATATGACCCTTTCATTGCAGACCCGCAGCCAACTCACTCTCCGGACTCCTCACCTGACATACGTGTGAAGCGGGAGCTGGACTTGGACTTCTCTGATCCCATTGAGAACAACGAGCTCCCGGGGGTGGAGTACAACAGCTTCAAACAGCACGATATGTGGGAAAGCGCTTACTTTGCGCTCAAGCCAAAGCCCTTTAAAAAAGAACGTCGGAGGAAAGGCCAGGAGAATGCTGATGGATTCGGCAAGTctcaggttctccggtttgatgAGAAAACCATGAAGAAGGCTCGGAGGAGACAGTGGAAAGAACCTCGCAGCTGTTCCAGGAGGTACCTGAAGGTGGACTTTGCAGATATCGGCTGGAACGAATGGATCTTGTCTCCCAAGTCTTTCGATGCCTTCTACTGTGCAGGAACGTGTGAATTCCCCATTCCAAAGGTAGTCCGCCCCTCCAACCATGCAACCATCCAGAGCATAGTCAAGGCCGTTGGGATAATTCCAGGTATCCCAGAGCCCTGCTGTGTCCCAGAGAAGATGAAATCCCTCAGTGTACTATTTCTGGATGAGAGCAAAAACATTGTGTTGAAGATCTACCCCAATATGTCTGTGGAGACGTGCGCTTGCAGATAGACTAACCGGTCagaggaaagaaagacaaaCGGGCATTGTTGTGGTTTTGACACACAAATTTACCTTGAAGAGGCATATTGTCTTTAGTTTGCACTTGTTAGAAAGTGCACACATTTTAAggactgcatttcatttttttataaatgcttacaaatcatattttaattttctctgtTTATCCACAAAGGATCTGCCATAAAGATTTTTCATTGTACTAGTTGGGTAACATAAGCACttactcttaaaaaaaattcttacaaATTGTATGCTTTGCTGTCATCTCTATGATATAAATGGTTGTTCGTCATGTTTGTAGATTACTGGATGTATGATGAGGTTTTATAGCATACTGAATATaacagacgtttttttttttggcagaactGTTGAATTACCTTGGAAAGTGAATTAgaataaagaattattttattattcagctGAATGTTGTAGTTACAGGTTAAGATAACGTCTTGGTGTTCATTAGAAATCTAAGTGTAACTTGATATCCAGGTCATTTGGTCATATGTGAAAATTGTGAACCCTTTAATTTACATCAAACTCTTACTTGTAGTAACTAATGTGAACTTCGTTTTGAGACTGAACTTAAAAGACCCCCATTCGCTGTGGTCCCTGATGGCTAGTGCTGACTAATTTTAcctgtacatttgttttatttcaagagATGTTACACAAGgttcttttttatattcattcgATAATCTCAGTTTGGTGCCATAAGCGAGGAGCATTTGGGCCAAATGCGTCAGTGTGTATAAACAATTgttcaatatattatattttagagaatgtatttttgtaaatgtgtgttttaaattatgaaatctaGCCTTATAATaagtagaataaaataaatgttaaacca

Function

GO: NA

KEGG:

id description
K22674 GDF10, BMP3B; growth differentiation factor 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137548 lncRNA upstream 15092 11414223 ~ 11462116 (+) True G92923
TU137550 lncRNA upstream 86219 11390739 ~ 11390989 (+) False arhgap22
TU137527 lncRNA upstream 108301 11368266 ~ 11368907 (+) True G92907
TU137340 lncRNA upstream 214588 11255631 ~ 11262620 (+) True cxcl12a
TU137325 lncRNA upstream 273524 11202654 ~ 11203684 (+) True G92767
TU137585 lncRNA downstream 28242 11509238 ~ 11509888 (+) True G92952
TU137594 lncRNA downstream 33481 11514477 ~ 11533930 (+) True G92958
TU137599 lncRNA downstream 37624 11518620 ~ 11519343 (+) True G92962
TU137606 lncRNA downstream 44361 11525357 ~ 11529080 (+) True G92965
TU137616 lncRNA downstream 62057 11543053 ~ 11558240 (+) True G92968
XM_043254612.1 mRNA upstream 22497 11426414 ~ 11454711 (+) False ptpn20
XM_043254611.1 mRNA upstream 22497 11428384 ~ 11454711 (+) True ptpn20
XM_043254615.1 mRNA upstream 22497 11444433 ~ 11454711 (+) False ptpn20
XM_043254616.1 mRNA upstream 22497 11447557 ~ 11454711 (+) False ptpn20
XM_043254613.1 mRNA upstream 29284 11428384 ~ 11447924 (+) False ptpn20
XM_043255618.1 mRNA downstream 5776 11486772 ~ 11507939 (+) True antxr1d
XM_043255343.1 mRNA downstream 50859 11531855 ~ 11533395 (+) True mettl18
XM_043254710.1 mRNA downstream 60126 11541122 ~ 11557216 (+) True tdrd9
XM_043254711.1 mRNA downstream 60126 11541122 ~ 11556025 (+) False tdrd9
XM_043254959.1 mRNA downstream 96666 11577662 ~ 11592600 (+) True lrrc9
TU137330 other upstream 259033 11215492 ~ 11218175 (+) True G92772
TU137332 other upstream 262121 11213526 ~ 11215087 (+) False G92772
TU137252 other upstream 508294 10964873 ~ 10968914 (+) True eif4ebp2
XR_006252423.1 other upstream 1057614 10418822 ~ 10419594 (+) False ly6pge
XR_006252428.1 other upstream 1147929 10329144 ~ 10329279 (+) True LOC122357143
TU137640 other downstream 90664 11571660 ~ 11577859 (+) False lrrc9
TU137630 other downstream 122701 11603697 ~ 11604852 (+) True G92977
TU137635 other downstream 122701 11603697 ~ 11604224 (+) False G92977
TU138047 other downstream 1090635 12571631 ~ 12575212 (+) True G93296
XR_006252318.1 other downstream 1105890 12586886 ~ 12588853 (+) False mgme1

Expression Profile