RNA id: XM_043254671.1


Basic Information

Item Value
RNA id XM_043254671.1
length 1202
RNA type mRNA
GC content 0.48
exon number 1
gene id LOC122356173
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 17421621 ~ 17422822 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCAACGGTTACCACAGGAAACGGAAGAGAACGACAGACAGAAGTCATTTCAAAACCCCGGGGCCGAGCAGAAGAATCACTCTCCGTGCGTTTGCTGCGTTCTCCTCCTCCAAAACCCACATCAGCCTCTCCTTACCTCTCCCGCTGGCTCTTTCTTCTCCTCGTTTCTCTGTTCGTGGCAAACAGCCCCCACCCTGACCTCCAGGAGAAGATCTCTTTAGCAAAAAAAGAGGAGATGCCCCCGCAGCCACAGGTGAAGAGAAGTTTCCTGGAATTCCTCAAGAGCTTTATCGGGATTGTACGGGTCCTCCAGATCCTTCTGGGAGCCGGGCTTTGGGTCACCATCGCAGCCAACAAGTATGAGGGCTCCATTCACTATGTGCTGTTCGTGGCCGTGCTTTTCTGGTTCCTCACGTTAGCCATCTTCATCCTCACGCTTCTGGACAAGCAGGACCTCGTTCCCATCCTCGGAGGAGAACGCTGGTTGTTAAGCAACATCATCCACGACGTTGCCGCCGCTCTGCTGTTCCTGTCCACCGTTTGGATCATGTTCTACAAAACCAAAAAGTACGACTACTGCACCCTGGACGTCTACAAACATAACTGCCTGTACAATGTCTACCTCACCGCCGCCGTCTTCGCCTGCTTCACCGCCGCCGTCTATCTGCTCTCCGCCGTCTACGGCAGTTGCAGGAAATGTAGAGGAGAGCGGACGGTCGTGTGAAAACCGACATTTTGGAAAGTTTATGGTGActtacaaatcttttttttatcaaagcaGAGGCTTGATCCTCTCGCCTCAGGCTTTCAGGTTTGTTTGTTGCTTTTAATACAGTACTGCCAAACATAGTCTATTTTACACTTGTGTTTATGTTGCCGGAGCTCTATATagaagtagttttatttttgcgtATTGTATAACTGACAACTCAAAGAGCAGTTCGTTGCTTGACGAAACCATATTCTTCacgttttgttctttttaaacctttttgatATGACTGAACGGGGCTCTGCTTCACACCGGTGTCTTTCATCAAGTTTGTATGTGTACTCGACTGTTTGACAATCCACATCAAAGATCTCCACTCGGTCTGCTTTGAAAGAGAGACAATATTTAAGGCAGACAATCATGGTTTCGGAATGAAGTGTGATATGTGGCTGTTGGCGAACGGttaataaataagaatgaaaTCAAGCACA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139885 lncRNA upstream 176652 17212947 ~ 17244969 (+) True G94543
TU139822 lncRNA upstream 391546 17021864 ~ 17030075 (+) True G94501
TU139823 lncRNA upstream 392021 17021864 ~ 17029600 (+) False G94501
TU139800 lncRNA upstream 482967 16926914 ~ 16938654 (+) True G94484
TU139793 lncRNA upstream 496484 16886084 ~ 16925137 (+) True G94481
TU140025 lncRNA downstream 466832 17889654 ~ 17889901 (+) True G94637
TU140151 lncRNA downstream 739155 18161977 ~ 18162280 (+) True G94741
XR_006252355.1 lncRNA downstream 840486 18263308 ~ 18264596 (+) True LOC122356621
TU140164 lncRNA downstream 840702 18263524 ~ 18270603 (+) True G94750
TU140167 lncRNA downstream 950741 18373563 ~ 18375173 (+) True G94753
XM_043255894.1 mRNA upstream 436419 16976130 ~ 16985202 (+) True zfyve21
XM_043256248.1 mRNA upstream 521258 16894884 ~ 16900363 (+) True dact2
XM_043254574.1 mRNA upstream 554090 16834290 ~ 16867531 (+) True smoc2
XM_043254575.1 mRNA upstream 554090 16834292 ~ 16867531 (+) False smoc2
XM_043255698.1 mRNA upstream 594751 16620282 ~ 16826870 (+) True cdh23
XM_043255027.1 mRNA downstream 320137 17742959 ~ 17752932 (+) False zbtb8os
XM_043255026.1 mRNA downstream 320143 17742965 ~ 17752932 (+) True zbtb8os
XM_043254561.1 mRNA downstream 523437 17946259 ~ 17952030 (+) True syf2
XM_043255018.1 mRNA downstream 542168 17964990 ~ 17966886 (+) True mgst3b
XM_043255016.1 mRNA downstream 545241 17968063 ~ 17973664 (+) True tmem50a
TU139637 other upstream 816238 16597781 ~ 16605383 (+) True G94378
TU139570 other upstream 902795 16515827 ~ 16518826 (+) True G94324
TU139572 other upstream 904862 16515827 ~ 16516759 (+) False G94324
TU139571 other upstream 904862 16515867 ~ 16516759 (+) False G94324
TU139427 other upstream 1517272 15903946 ~ 15904349 (+) False nkx1.2la
TU139910 other downstream 137474 17560296 ~ 17575938 (+) False G94564
TU139911 other downstream 137474 17560296 ~ 17562248 (+) True G94564
TU140175 other downstream 1016351 18439173 ~ 18439583 (+) True G94760
TU140212 other downstream 1114070 18536892 ~ 18537443 (+) True G94789
TU140195 other downstream 1122530 18545352 ~ 18631718 (+) False G94776

Expression Profile