RNA id: XM_043254681.1


Basic Information

Item Value
RNA id XM_043254681.1
length 3736
RNA type mRNA
GC content 0.40
exon number 5
gene id tacr2
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 8362997 ~ 8368788 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAGGGTGACGTGCGTCACAGCGCGCGCAGGCAAAGGTGTTTCGGTCAACGTCACTGCACAGGACCCAACACACCTCCAACACTTGGCACGCATTCCTTTAGTTTTTCAGTGCCGTATCATCCCTTCGGGCGCAATAACGCGCTTCAGCAGACGGTTTGGACACGAGGCGCATGCACTGACCACGCTCACAGTTTGGAAAAGAACCTAAAATGCACAAGTTTATGTCGTAGCGACAGCAGAGCAAGTCCCTCACTGGAATAAGCGTGCAGATTGATTCATCTCTATACTACGGACAGATGCAATGGATACCACTTTGGACCCCTTTTCAACGTCTCTTCTCTACGACGAGGAAGATGGAAACGAAACCTCTACCAATCTATTCGAGCAGCCGGACTGGCAGGTGGCACTATGGGCGATTGCATACTCTTTAATCGTAATTGTGTCCATCATTGGCAATGTCACTGTTATTTGGATCATTCTGGCACATAAACGCATGAGGACCGTCACCAACTACTTCATTGTCAACCTCGCCTTTTCTGATGCGTCTATGGCAACTTTTAACACTGTCTTTAATTTCGTGTATGCTTTGCACAATGACTGGTATTTCGGATTGGGATACTGTAAATTTCAAAACTTCTTCCCAATAACAGCTATGTTCTCAAGCATTTATTCAATGGCGGCTATTGCTGTTGACAGATACATGGCGATAATCCACCCGCTGAAGCCCAGGCTCTCGTCCACTACTACTAAAGTTCTGATCGGGGTCATCTGGACCGTGGCTTTTTCCCTTGCCTTTCCTCAGTGTTACTACGCCAGCACCAAGTTCTACTTCCCTCGCACTGTTTGTATGGTGGAATGGCCTGACGATTATGGAGGGAAACATCAGCTCTCGTATCAGATTGCTGTGATTATCCTGATCTACttgctccctctgctggtgatGTTGGTGACCTACAGCCTGGTTGGACGGAGACTGTGGGGCAGCGAGATCCCTGGAGAGGCATCAGATCACTACCAGAACCAGATGCAGGCGAAACGCAAGGTTGTGAAGATGATGATAGTGGTGGTGACGACCTTTGCGATATGTTGGCTTCCCTACCACATCTACTTCGTCCTGGGGAGCTTCAACCGGGACATATACAAGCAGCACTACATCCAGCAGGTCTATTTATCCATCTTCTGGCTGGCCATGAGTTCAACTATGTACAACCCCATCATTTACTGCTGTCTAAACCAAAGATTCCGCTCAGGTTTCCGCAAAGCGTTCCAGTGGTGCCCCCTCGTCAAAATTTCTGAGGAAGACAACATGGAGCTGCAGCACATGAGGACCTTCCACATGAGACGCAGTTATCGCACCGAGACCACCAGCATGGTGGTCCGTAATCATGCAGGCGAACCGGAAGACACCACATCCAAACTAATCAAAGCCTAAACTTATCATCAGTCACGAGAGTGAAAAACATCCCTGTTGgcaattattaaaatcaagCACGACCATACTTGCACTTAATACCTCACAATTAGATTTTCCCTCTCTATTGTGGATTCGGTGGGTTTTACAGGTGGAGTATTTATCTACTCCTATGGCATAAGCACCAAGCCTTATTTGTTTCTGTGTCGCTGCTTGAAATACTAGTCCTTGTACCTGCATAGACCAGTTCAttttgtatatactgtatacactactgttcaaaggtttggggttagagcatttataattatattttaaataatcactaATCTTTAGTCAGATAGTCAtgaaaaatgtatcagtttctacaaaaatattaagcatctcAATTGTCTTCAGCATTGATAatgagaagaaatgtttcttgagcaccaaatctgtacctttgatttctgaaggataatgtgattCTGTTAtagatgctaaaaattcagctttatgtgctttttaactgtatttttaatcatataaatgcatgcgtAATTCtgcagaacattaaaaaaaaacatattacgGACCCTAAACCTGAACAACAGTTAACCATGTTAATTCGTGCTCCACTATtgagaaatgaatgttttaagcTGTAAATATTGCCGTTAAATGTTCAGTGGCAtctctaaatgtaaaaacagaacTGCtaaatcagcattaaactgatcagaGCATCTGTGCCCAGGAGCAGTGGCGCCTGCAGGTGTACGGCTGCCATGAGCGCTCAGACTGACCTGAGACTTGACCCGCAATCTACAGTGAAACGCTCTTTAAAAGTGTCTGcaataaagccattttaaagcattttctgcATGGATTTAAACAGGTAGGCCAATAAACAATTCACATATCAGACGTTGCAGCAAATCctttacattttaactaaaaaatatacaaatctgaaaataaattcaGCTATATAAATgccattataattattattttaattgtatagctacacttacaaaataaaacacaacatgtGATCTGGTCTGTTTCATGCTTTGccttaattttatattttagactatttttatatatgatttccCTTCTCTTCATTGGACGCGTGCCTTCAGAGAGAAATGCATCTTTATGGATTAGTGAAAgagtttttacttttactctCCTAGACCGAGACTTTTCCTAGTCATAAATAAAAGCACCGTTTTGTTGATAATGGGaatgtacacaaataaaagtagacccTTTGCAGTTCCGAATGATGcataacttttacttttatgaGCAAAAAGTTTCTACTGAAAAATGATATGCAAGTGATGATACTTGCAGAGCGCTTCACCTCCTGCTGTACATGCGCCTGGCGTAGATTTATAAAGGTCAAACATTTGAACTAGCGAGCTATCGTGATTTGCTTAAACCGTTTGGATAAACAGCTATCACTTTTCCATTACTTACATACCCTTGGAAGAAATCCTGCAGGCGCCCCTGCCCAAGAGTGTGGTTTTCTGGAGATATTCAGTCAGGTGTAAGCAGTATGATGACTGTTAGGTTGACTTGACAGCATTTGAAAAATAGAGACAAAATCAGGTGGGAAATATGTGTGTCTATAGTGGTTAAAGATATCATGTATATAATCCAAACAAAACCTTACATTTCGGTGGTACTTAATGTTTACAGcatgtgttatatttaatatacatctGCATGTACTTCCATATACGTGACTGATTAAAGAGAATTTAGtatgtttgctaaaaaaaaaattaatatgatttttgtcgTTCAAGTATAATatctaagaaacactaaaatgtaGCGAGTATTGAGTATTATGTACAGGAGTAATTAAGCTTTTCTATATACAACTATTATGTTTGTTCCCGTCACGTATAACGGCAGAGGTTAATGCacgatttatatttttattgatttggtTGGCAAGAActtcatgtttttctttggtTTGAGGGCCTATGATGTGTAGAATTGTATGAATATAGGAAATCTGAGTAAAGGGTATTGTACAGTTACTGCATTACTAGTGCATTACATTACTACAGTTTTGTCgaatagaaaaatgtaattaaaatctgACTCAATCGAGGCCCACATTTCGCTCCCTTAATTTGAagtttaaatctttatttatttcgtcatttttgtggctttttgaaataaagagtgtttaaataaaaatactgcaagACAATTTGAGAGACAATTACCAGCATGTTCACTGTAACAGTAAAAACTGTGATTGgatgatcatttaaaaattgaGCCATTTTGTTCAGGCATGCTTTTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135992 lncRNA upstream 15840 8343124 ~ 8347157 (+) True G91855
XR_006252367.1 lncRNA upstream 24281 8336295 ~ 8338716 (+) True LOC122356687
TU135989 lncRNA upstream 24944 8336651 ~ 8338053 (+) False LOC122356687
TU135967 lncRNA upstream 46585 8313114 ~ 8316412 (+) True G91839
TU135964 lncRNA upstream 47541 8309278 ~ 8315456 (+) True G91836
TU136011 lncRNA downstream 17080 8385868 ~ 8386384 (+) True G91867
TU136002 lncRNA downstream 41180 8409968 ~ 8412679 (+) False G91863
TU136004 lncRNA downstream 41180 8409968 ~ 8413781 (+) True G91863
TU136134 lncRNA downstream 110655 8479443 ~ 8481992 (+) True G91944
TU136208 lncRNA downstream 216569 8585357 ~ 8586003 (+) True G91991
XM_043255659.1 mRNA upstream 38790 8319498 ~ 8324207 (+) True hnrnph3
XM_043255660.1 mRNA upstream 38790 8319498 ~ 8324207 (+) False hnrnph3
XM_043255661.1 mRNA upstream 38790 8321121 ~ 8324207 (+) False hnrnph3
XM_043255654.1 mRNA upstream 62252 8291171 ~ 8300745 (+) True dna2
XM_043254623.1 mRNA upstream 106899 8238414 ~ 8256098 (+) True nfkb2
XM_043254903.1 mRNA downstream 53159 8421947 ~ 8435924 (+) False pik3ap1
XM_043254901.1 mRNA downstream 53161 8421949 ~ 8435924 (+) True pik3ap1
XM_043254905.1 mRNA downstream 53161 8421949 ~ 8435924 (+) False pik3ap1
XM_043254904.1 mRNA downstream 53161 8421949 ~ 8435924 (+) False pik3ap1
XM_043254900.1 mRNA downstream 67832 8436620 ~ 8479074 (+) True LOC122356333
TU135961 other upstream 52173 8306486 ~ 8310824 (+) True G91833
XR_006252298.1 other upstream 481514 7858698 ~ 7881483 (+) False zswim8
TU135767 other upstream 524056 7836190 ~ 7838941 (+) False chchd1
unassigned_transcript_1926 other upstream 1231501 7131426 ~ 7131496 (+) True trnag-gcc_68
TU134595 other upstream 3365101 4992327 ~ 4997896 (+) False si:ch73-49p17.1
XR_006252358.1 other downstream 297480 8666268 ~ 8683052 (+) False pcnx2
TU136262 other downstream 370285 8739073 ~ 8740089 (+) False sf3b5
TU136388 other downstream 792773 9161561 ~ 9164114 (+) True zgc:153981
TU136946 other downstream 1867128 10235916 ~ 10249725 (+) False LOC122356813
XR_006252428.1 other downstream 1960356 10329144 ~ 10329279 (+) True LOC122357143

Expression Profile