RNA id: XM_043254700.1


Basic Information

Item Value
RNA id XM_043254700.1
length 4171
RNA type mRNA
GC content 0.48
exon number 12
gene id kcnh5b
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 14490704 ~ 14524802 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTCCCGGCAGCCAGAGCGCGACGTTACCATGAGCCTCCCCGCTCCGCCGGCAGAGACTCCACGCGCAGAGAGTGCCCACCTGACGAGAGCAGCGCGACACGCACAGCCGCACGATGCCCGGCGGAAAGAGAGGGCTGGTGGCACCGCAAAACACTTTCCTGGAGAATATCGTCAGGCGCTCGAGTGAGACAAGCTTCTTGCTGGGGAACGCTCAGATTGTGGACTGGCCTGTCGTTTACAGTAATGACGGCTTCTGCAAGCTGTCTGGATACCACAGAGCAGAGGTCATGCAGAAAAGCAGCACGTGCAGTTTTATGTATGGGGAGCTGACAGACAAGAGGACCATAGAAAAGGTGAGACAGGCCTTTGACAACTACGAGTCCAACTGCTTTGAAGTGCTGCTGTACAGAAAGAACAGAACTCCAGTCTGGTTCTACATGCAGATTGCACCGATccgaaatgaaaatgacaaagtgGTTTTGTTCCTGTGTACGTTTAAGGACATCACAGTCTTTAAACAGCCTATTGAAGATGAAAGCACCAGGGGTTGGACCAAGTTTGCACGTTTGACTCGAGCGTTGACAAACAGCAAAAGCACCATTCAGCAACTCCAACCCATGAGCAGAACAGACATcacttcacacaaacactccagACTCGCAgaggTGCTTCAGCTCGGCTCTGACATTCTTCCGCAGTATAAACAGGAAGCCCCTAAGACCCCGCCTCATATTATCTTACATTACTGCACCTTTAAGACCACCTGGGACTGGGTCATCCTCATCCTGACCTTCTACACCGCCATCATGGTTCCTTACAACGTCTCCTTCAAGACCAAACAGAATAACGTCACTTGGCTGGTTCTGGACAGCGTGGTGGACGTCATATTCCTTGTGGACATCGTGCTGAACTTCCACACCACGTTTGTGGGGCCTGGAGGTGAGGTGATCTCGGATCCGAAGCTGATCAGGATGAACTACCTGAAGACCTGGTTCGTAATAGACCTGCTCTCCTGTCTGCCCTACGACATCATCAACGCTTTCGAAAACGTGGACGAGGGCATCAGCAGCTTGTTCAGTTCTCTGAAGGTGGTTCGATTGCTTCGACTGGGTCGTGTTGCACGTAAACTAGACCACTATCTGGAGTACGGTGCAGCTGTGCTCGTGTTGCTGGTCTGTGTGTTTGGACTGGTTGCCCACTGGCTTGCCTGCATATGGTACAGTATCGGAGATTACGAGGTCATCGATGAACAAACCAACACCATCAAGACTGACAGCTGGCTCTACCAGTTAGCCACCAGCATTGGATCCCCGTACCGGTACAATGCCAGTGGGACTGGCCAATGGGAGGGTGGCCCTGGGAAGGACTCTCTGTATATAACGTCACTATATTTCACCATGACCAGCCTGACCACTATTGGCTTCGGAAACATCGCGCCAAGTACAGATGGAGAGAAGATCTTCTCTGTGGCCATGATGATGGTCGGATCTCTTCTTTACGCAACTATCTTCGGTAATGTGACGACCATTTTCCAGCAGATGTATGCAAACACCAACCGTTACCACGAAATGCTGAATAATGTGCGGGATTTCCTCAAGCTCTACCAGGTGCCTAAAGGCCTCAGTGAGAGAGTAATGGACTACATCGTCTCCACGTGGTCCATGTCCAAAGGCATCGACACAGAGAAGGTGCTCTCCATTTGCCCCAAGGACATGCGGGCAGACATCTGTGTGCACCTAAACAGAAAGGTGTTCAACGAGCACCCAGCGTTCCGATTGGCCAGTGATGGATGCTTGCGCTCATTGGCCGTGGAGTTCCAGATGATACACTCCGCCCCCGGCGACCTCATCTTTCATGCGGGTGAAAGCGTGGACCTACTCTGCTTTGTTGTGTCGGGGTCACTGGAGGTCATCCAGGATGACGAGGTCATCGCTATACTGGgtaAAGGGGACGTGTTTGGTGATGTATTTTGGAAAGAGACTACTTTGGCCCACTCATGCGCTAACGTTCGGGCGTTAACGTACTGTGATCTTCACATCATAAAAAGAGAAGCCTTGCTGAAAGTATTGGACTTCTACACAGCGTTTGCCAACTCCTTCTCTCGAAACCTCATTCTCACCTGCAACCTACGCAAAAGGTTTATATTTCGGAAAATCATCGATGTGAAGaaggaggaagaagaaaggCAGCGCTCAAAGAATGAAGTTCCACTCACCATTCCTGTGGACCACCCGGTCAGAAAACTTTTCCAGAAGTTTAAACAGCAGAAGGAGCTCCGTAACCAGGGAGCTTCGGCCCAGCTAGACCTAGAGAAGAATCAGCAGCATCTACAGCAGCCCACACGGATGCCGAAACCTCATGCCTCCCTCATGCAGAACTCGCTGCATGCGGTTCAGAATGGGTCCACCAGCAGCGTGGTCACCATCTCCCAAATCACACCCATCCAGAACTGCCTGGCCTACCCTAAAGTGGGCGACTCAGTCAAGCAGAACAACCGCGACATCATGGAACTCAAACCTGCCGTGGCCAGCAGCGACCAAGTCGCAAATCGCCTCAAAGTGAATAACACGGCAAGGACCAAACCTGCAGGAACCGCCCGTGGCTGGATGAGACTGAAAAACAACATGGCTGCCCCAGGTTCACCTCCAGAGGATGAGAGGAAAGAGGGATTGAACAATGCAGCCAAAGCCGTCTCCATGGAGCGCATTCCACCAGAAGTCAAAGTTCAGATAGAAAGTGTCGAGGAGGACGGAGCATCCAGGAAGAATTCGCTCCGCAAAACGGACTCTTGGGATAGTGGCTTGACTTACAGTGACCAGAGACTGGATAGGGTTTCAGAACCACAGAGCCCTGTTcctggaggaggtggaggagaagGGCCAGCCCGGGATTTTTACCCCAGTAGCGAGAGCTCATTCCAGGCCTCTCTGCAGGAGGCAAGGCTGGAGCTGCGGACAGAGATCCAAGCTCTGAATGGAAGGATGTCTACTTTAGAAGAACGGGTTGGACAGATTCTCAGACTGCTTTTAGAGACTTCAAAGTCCACGTCTAGCGAAGACCCAAccccaaaaacacacagacCCAAACTCAAAGCACAAGGCAGCATCCCAGTGTCCACACTCAGTACGCCAGATTCTGAAAAGGAAGAAAGTTTGCCATAGGAAATCAGACTTTGGATTCAATAAGGTTTTGAGAGGGAGCGTTTGTAGCATGGCCGGGGCTTTGGTTCATCCAAATTTTGCACCTGTACCTGCAGCTTATACAGGAAGGCCTAAAATAGGAGCTTGGGTTTGTTTCTAGCTTCTGATTTCTGAGGATAAAGCTGACACCTGAACATTTGTATGAGAACAGGAGTTAGTTTCTGGATCTAAGTAACTCCCAGGAACTCTAACCCCATCAGAGTACAGGGGCGTGTActgagaaatacaaaaataatgggatttttagttttagtgctttttaatGTTCAATCAGCACTTTTTTTGCACACTGAAGTAATGCAGgaacaatagtttttttccctcttttttcagcgtgagtttgtatttataatgcatgtcCAGCTGGGTTCTGGCTTGCCAAAAATGTACAACCCTGATGACGTCTGTAcaattgaaattatatttaaatgcttgtaTATTATGCAGTTAACTGCATGCAGATCTATTTATTCTCACAGAATGCTTATTTTCAATGTGTAAATGAAAGAGACTGTTGATTGTCTTGATATTACCATAATGTACATTCAGGTTTTTAACAAATGTAGCATGGCAGATCACTGAGGAagaatgtgttgtgtttgaaaCATTTACGTATGCATGAATGACTTTCACAGCACTCAAGAAGTTTGCCTTAAAGGACCTGAACATCACTCTTGAGAtaaagctgaagaaaaaaaatccactggTTATCAGTGTGGGAcaggtctgttttttttgtctgtctttctatacatttttacttacatgtgtcagttttctttttgaCAAGGATTTTGGAGTGTGTAGTATTATGCCATTCATTTATGTTCCACTCAATGTTATtgggtttgttttatttcagtagcAGCTCTTGGGCCTGAAATGCAGCTTCATCACTGTATATCTGTTGACTGTATTATATGCAACCTTAACAAAAATtggtaaataaattataattatCACTCTGCAA

Function

GO: NA

KEGG:

id description
K04908 KCNH5, KV10.2; potassium voltage-gated channel Eag-related subfamily H member 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138967 lncRNA downstream 300800 14187539 ~ 14189904 (-) True G93905
TU138968 lncRNA downstream 300800 14187539 ~ 14189904 (-) False G93905
TU138970 lncRNA downstream 300800 14187539 ~ 14189904 (-) False G93905
TU138971 lncRNA downstream 300800 14187539 ~ 14189904 (-) False G93905
TU138913 lncRNA downstream 586002 13903754 ~ 13904702 (-) False LOC122356386
TU139118 lncRNA upstream 347630 14872432 ~ 14873014 (-) True G94003
TU139135 lncRNA upstream 456194 14980996 ~ 14995700 (-) True G94016
TU139147 lncRNA upstream 500910 15025712 ~ 15036994 (-) False lmbrd1
TU139165 lncRNA upstream 702712 15227514 ~ 15231255 (-) False col9a1b
TU139177 lncRNA upstream 719729 15244531 ~ 15248584 (-) False col9a1b
XM_043255315.1 mRNA downstream 7665 14393659 ~ 14483039 (-) False syne2b
XM_043255313.1 mRNA downstream 7665 14393659 ~ 14483039 (-) False syne2b
XM_043255312.1 mRNA downstream 7665 14393659 ~ 14483039 (-) True syne2b
XM_043256289.1 mRNA downstream 156892 14315230 ~ 14333812 (-) False trim9
XM_043256292.1 mRNA downstream 156898 14315230 ~ 14333806 (-) False trim9
XM_043255254.1 mRNA upstream 11843 14536645 ~ 14555851 (-) True ppp2r5eb
XM_043255255.1 mRNA upstream 11843 14536645 ~ 14546197 (-) False ppp2r5eb
XM_043255257.1 mRNA upstream 32442 14557244 ~ 14562378 (-) False wdr89
XM_043255256.1 mRNA upstream 32442 14557244 ~ 14561719 (-) True wdr89
XM_043255572.1 mRNA upstream 38587 14563389 ~ 14576348 (-) True sgpp1b
TU138948 other downstream 326356 14160323 ~ 14164348 (-) True srsf5a
TU138949 other downstream 326356 14160323 ~ 14164348 (-) False srsf5a
TU138950 other downstream 326356 14160323 ~ 14164348 (-) False srsf5a
TU138946 other downstream 407946 14079532 ~ 14082758 (-) True LOC122356235
TU138915 other downstream 578867 13910339 ~ 13911837 (-) True G93875
TU139176 other upstream 715948 15240750 ~ 15242797 (-) False col9a1b
TU139178 other upstream 725773 15250575 ~ 15253281 (-) False col9a1b
TU139278 other upstream 1039815 15564617 ~ 15583917 (-) True G94128
TU139299 other upstream 1117229 15642031 ~ 15642503 (-) True G94147
TU139376 other upstream 1227845 15752647 ~ 15755060 (-) True nkx2.3

Expression Profile