RNA id: XM_043254705.1


Basic Information

Item Value
RNA id XM_043254705.1
length 2843
RNA type mRNA
GC content 0.47
exon number 5
gene id valopa
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 21847430 ~ 21866898 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCATCTTCTGAACGCGAGCGTCTGCGTAAAAACCTTCGGAGCGCGCTGAAGCgctgacgatgatgatgatgatgaaggcgCAGTTACGTGGCTGACCTGACCCGTGATGGCAGCCTATATAAACCCCGTCCAGCCAGAGAAAGTCTGCAAGGTCTGCCGGACCCACCGAGGAGCGGCTCCGGATGTAGGACGCGCGCGGACTCGCTCCAGATGTAGACTCGCTTCGGTTCACTCGACTCGTTCGGACCGGAGCCATGGAGTCGTTCGAGGCGGCGGTGAACGGCGCGTCTCCCGGCGAGGACCCGTTCTCCGGACCGCTGGCGTCCATCGCGCCCTGGAACTATAAAGTGCTGGCTGCTCTGATGTTCATCGTGACCTCGGTGTCTCTGTGCGAGAACTTCACCGTGATGCTGGTCACCTTCAGGTTCAAGCAGCTCCGGCAGCCGCTCAACTATATCATCGTGAACCTGTCTCTGGCGGACTTCCTCGTGTCTCTGAGCGGAGGAACCATCAGCTTCCTGACCAACTATCACGGCTACTTCTTCCTGGGGAGGTGGGCTTGTGTTCTCGAGGGGTTCGCGGTCACCTTTTTCGGGATCGTGGCTCTCTGGTCTCTGGCTGTTCTGGCGTTCGAGCGCTTCTTCGTCATCTGCCGGCCGCTCGGGAACATCCGCCTGAGAGGAAAACACGCGGCTCTGGGTCTGCTGTTCGTCTGGACCTTCTCCTTCGTCTGGACCATCCCTCCGGTGCTGGGCTGGAGCAGCTACACCGTCAGTAAGATCGGCACCACCTGTGAGCCCAACTGGTATTCAGGAGACCTCCACGATCACACCTTCATCATCACGTTCTTCGTCACCTGCTTCATCCTTCCTCTGGGCGTGATCATCGTGTGTTACAGCAAGCTGCTCCGGAAGCTCAGGAAGGTGTCTAACACGCACGGCAGGCTGGGTAACGCCCGGAAGCCCGAGCGTCAGGTGACTCGtatggtggtggtgatgatcGTGGCCTTCATGGTGGCCTGGACTCCGTACGCTGCCTTCTCTATCGTGGTCACGGCCCTTCCCAGCATCCACCTGGACCCGCGGCTCGCGGCCGTTCCTGCGTTCTTCTCCAAGACCGCCGCCGTTTACAACCCCATCATCTACGTCTTCATGAACAAACAGTTCAGAAAGTGTGTGGTTCAGCTCCTGAGCTGCAGCGACGTGACGGTCATCGAGGGCAACGTCAACCAGACCACCGAGAGAGCAGGCATGACCAATGAGAGCAACACCGGCGAGATGTCGGCCATCGCCGCACGCATCCCCGCCGCCGGAGCCGTCCCGCTGAAGACCGAAGAGCAGTCCAATGAGCGCAGCTCCTTCGCCCAGATCCCCATTCCTGAGAACAAAGTATGTCCGATGTGAAGACCTCTGCTGAATGCGTACTTACTTTTGAATGCTGGCATCCAAACTTTAGGCTAAAAGACGCCGATCCAGCATTAAATTACAGCTTGAAATGTGCAGTGTTGAGGAAGAAACTATCTACAAACTACTTGTTATTTTGtttggcatttatttgaaagcttTATTTAGCCGTGGTTTcacaaatacaattaattttatattcatacagTTACAGTAATGGTAACACTACTTGAGGTCTTTGTGTATAATGCATTACCACaggaaaaaatactaaaatgaaatacataaataaaagtgcttcTATAGTTGATTGGGTAATATGACAACTATAGCAAAAGAAACTAATTTCAATTAAGTTTTCTACAATACTTTAATACTACAATACACTACGGTTTACTACATTATTTATCAGTTCACTATAgctaataatgcattaaatattttcataaataatgcattatattttcagatttgcTTGTTGTAGCTGAAATGTGTCGTTCGtcttgtgttttaatgcattatattttttaatgagtaGATTAGTATTATAACTGTGATTACAATTATTCACGATGTCACCATTTAAAAAGCGTAATTAATGcgtgattttattattaaatagataaTTGGCACTTTTCCATCTCGCAGTTCGGAGTTTATAGCTCAcaatttataatttgtttttgaattcaGAATTGACGTTCGGCACTCTTTTTCCACAtggaataaaagataaaaaaaaagcgaaTTGCGacatacttttataatgcattatataaatgctTCAGATTGCGTGTTACCGCTGACAGCAATAGCATGGTACAGTGCTGCTAATATTACAGTACATCAATATACATGATGGTGGTAAACCAAGCTGTATACGTGGAACCCCGAAGAACCGATTGGAAGAACGACATGTTTAGCTAGGAAACGAAAAGCTCCTCCTCAACACTGCATTAATGACTCCTGACTGTTGAATGTTGATCATCGGTTACTCACACTGAATTTTCCGAGGCTTCTTTACTGCAACATTTGCacaattattaaacagaaaTCAAGCAGAAAAACAGACTGAATGCGATGCGTTCGGGCACCTGACACCAGAACACGTGTGCATTTCCCAGATGAAGGGAATAAGTGGACGAGCAAACACTACAAGTGCCCTTCAAACTCTGCCGAACGTCATCCAGCACACCCAGAGTCTCCTGAACTGTTATCTTTAAGGAATATTTCCCTGTATCTGATGCATTCTGTGTTGACTGTATGatcagagaaacacacacgaGCTCCGATGATGCAGCTTTCTCGAcaactgaatgtgtttttattttattcctttgttAAAGGAATgtcaaaattcagatttttttttttttcaggtctgTTTGCGCTTAAACAAAATGTACACTTATCATTAAATTGGTCAAGAGTAACAGCAAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141539 lncRNA downstream 352277 21487514 ~ 21495153 (-) True G95715
TU141427 lncRNA downstream 843779 21002627 ~ 21003651 (-) True G95643
TU141426 lncRNA downstream 845586 21001337 ~ 21001844 (-) True G95642
TU141425 lncRNA downstream 848165 20999040 ~ 20999265 (-) True G95641
TU141424 lncRNA downstream 850919 20996083 ~ 20996511 (-) True G95640
TU141779 lncRNA upstream 7615 21874513 ~ 21874929 (-) True G95899
TU141784 lncRNA upstream 172884 22039782 ~ 22040106 (-) True G95903
TU141782 lncRNA upstream 247798 22114696 ~ 22120442 (-) True G95902
TU141813 lncRNA upstream 269038 22135936 ~ 22136391 (-) True G95922
XR_006252426.1 lncRNA upstream 270490 22137388 ~ 22142772 (-) True LOC122357128
XM_043256061.1 mRNA downstream 524427 21269350 ~ 21323003 (-) False LOC122356942
XM_043256060.1 mRNA downstream 524429 21269350 ~ 21323001 (-) True LOC122356942
XM_043255250.1 mRNA downstream 592792 21209818 ~ 21254638 (-) True LOC122356506
XM_043255253.1 mRNA downstream 805276 21027765 ~ 21042154 (-) False LOC122356507
XM_043255251.1 mRNA downstream 805307 21036985 ~ 21042123 (-) True LOC122356507
XM_043254889.1 mRNA upstream 41460 21908358 ~ 22024610 (-) True LOC122356328
XM_043255712.1 mRNA upstream 174557 22041455 ~ 22051686 (-) True pwwp2b
XM_043256219.1 mRNA upstream 285137 22152035 ~ 22156844 (-) False tmem254
XM_043254898.1 mRNA upstream 290767 22157665 ~ 22183174 (-) False srfb
XM_043254899.1 mRNA upstream 290767 22157665 ~ 22183173 (-) True srfb
unassigned_transcript_1933 other downstream 193749 21653612 ~ 21653681 (-) True trnag-gcc_72
unassigned_transcript_1932 other downstream 273109 21574251 ~ 21574321 (-) True trnag-gcc_71
unassigned_transcript_1931 other downstream 433559 21413800 ~ 21413871 (-) True trnag-gcc_70
TU141433 other downstream 667213 21007472 ~ 21180217 (-) True G95646
TU141260 other downstream 1275868 20570038 ~ 20571562 (-) True G95526
TU141816 other upstream 271431 22138329 ~ 22143970 (-) False LOC122357128
TU141794 other upstream 284844 22151742 ~ 22156824 (-) False tmem254
TU141795 other upstream 284844 22151742 ~ 22156859 (-) True tmem254
XR_006252351.1 other upstream 365916 22232814 ~ 22250313 (-) False klc1b
TU141832 other upstream 369206 22236104 ~ 22238570 (-) True G95932

Expression Profile