RNA id: XM_043254710.1


Basic Information

Item Value
RNA id XM_043254710.1
length 4717
RNA type mRNA
GC content 0.47
exon number 35
gene id tdrd9
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 11541122 ~ 11557216 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTGCTGGCAGGAGGTGGCCGCGCCGAAAGAGATGCTACAGAGCAAGAGTGGACGCATGTGAGCTCGTCTCGGCGTTTGATTATTTGCCGTTTTTGCGTACTTTTTGCAGGGTTTGTGCAGAATGCATCAGGCCATCACTTCAGCTCAGATAGCCCACTGGTTTACTGTCGGGGTACAGTTTGCAAACATCACAATTACCGATGAAGTGAAAAAGCAGGAAAAGGCAGAAGCTCCTGCTACTACAGACAGCTCTGTGGAAGAGTTGTCTGAACGGACTTCTCCAGAAAGGGCAGGATCAGATGAAGGAAGTCAGAAGAGCAGGAGGCCAGAACTATCAACCTGTCAAGAAACCACCCCACCTTCACTCGGCAGTTATGCGTATCCAGTTCTCCCTATTACGAAGAACAGACAAGAGttggtCTCTCTGATTGAGAATAACTCTGTGATCATCATTCGTGGAGTGACAGGCAGTGGGAAAACCACCCAGCTGCCACAGTTCATTCTGGATCACTATGCAGAAAAAAAGGCGCCCTGTAACCTGGTTGTCACTCAGCCACGCAAAATTGGCGCCAGCAGCATTGCCCGCTGGGTGGCACGTGAACGCCGGTGCACACTGGGCAGCTTGGTGGGGTATCAGGTAGGTTTAGAGAAGATGGCCACAGAGCACACCAAACTGATTTATGTGACCACAGGAGTCTTGCTGCAAAAATTAGTGTCAGCCAAAACGCTCACAGAGTACTCGCACATCTTCATAGATGAGGTCCATGAGAGAACAGAAGAACTTGACTTCCTGCTGCTGGTCGTCAGAAAACTGCTGCGGACCAATTCCAGATATGTCAAGGTCATACTCATGTCAGCCACCATAAACTGTGCTGAGTTTGCAGAATATTTTGGAACTCCGATCCGCAATCAGATGAATCCAGCATACGTGTTTGAGGTGGAAGGAGCCCCATACACCATTGAAGAGTTCTACCTGGATGAGCTCAAAACTATCCTACCTCTTGGAGTCAATGTGGACCTAGCCTTCCCAGCAGACCCTTATATCACAGAGGAGATGTATAATGTTGCCGTCTCTCTCATCCAGAGCTTTGATGAAATGGAGGCTAAAGATCAAAGATGCTCAGAGCAAACTAGAAGTGCTACTCATCCAGATAGGGGTAGTGTGCTTGTCTTTCTGCCTGGGTTGGCTGAAATACAATATATGAAGGAGGCCCTCGCCAAACTAGTGCGCAAAAGGTTGCAGGTATACCCTCTTCACTCAACTGTCACTTTAGAGGAGCAAAATGGAGTGTTCCTGGTTCCTATACCTGGATACCGGAAGATAATTCTCTCCACAAACATTGCTGAGAGTTCTGTCACTGTGCCTGATGTTAAATACGTGATTGACTTCTGCCTTGTGCGTCAGTTGGTTTGCGATAAGGAGACCAATTACAGATGTCTTCAAATCACCTGGGCATCTAAGACCAGTTGCAACCAGCGTCGAGGTCGTGCTGGACGGGTGTCTAAAGGCTTCTGTTACAGATTGGTGagcagacatttctggaagcaTGAGATTCCAGATTTCACGATCCCAGAGATGCAGCGATCACCATTGGTCAGTACCTTGTTGAAGGTAAAGTTGTTGGATATGGGTGATCCCCGCTCAGTTCTCTCCACGGCCCTCACACCACCCAACCTAAATGACATTGAAAGAACTGTGCTGCAGCTCAAACAGATCGGAGCTCTTTCTGTGCAGAGCAACAGTCAGAGGCAATTTGATGGTGAGTTGACATTTCTGGGTCGTGTGTTGGCGCACCTGCCTGTGGATCTGCAGCTGGGCAAGCTGATTGTTCTTGGACATGTGTTCGGCTGTCTGGAGGAGTGTCTTATTATTGctgcatctctctctctgaagagTTTTTTTGCCATGCCATCACTGCAGCAGTTGGCTGGGTACAGGAGCAAGTTGAGCTTCGCACAGAATGTTCCAAGTGACTTCATTGCTTTCGTCAATGCCTTTAAGgcCTGGTACACATCTAGAGCTAAAGGAGAGCTCAGACACCCAAAGGATGAACTGGAATGGGGCAAAGAGAACTGCATTCAGATTAAACGAATCAGAGAGGTTGCAGAGCTCTTTGAAGATTTAAAGAAGAGAGTTTCCAAGTTTAACATGCACATCAGCTGCTACTCAAACCCCACAGACAACACCAGCCTGCACAAACAGAGATTCATTCTGCAGGTAGCCATTGCGGGTGCATTCTTCCCTAACTATTTCTCTCAGGGAGAAATTGATGAGCAGCTGGCATCTAAGGAACTTTCTGGAAATGATCCAAAGACTACCATTATGATTAGGAACTTGCCTCCATTCGCATTTCTGTGCTATAAGCAGCTGCAGTCACTTTTCCGTCAATGCGGACAGGTCAAGTCAATATGTTTTGATGGATCTAGAGCGTATGTTGAGTTTTACCGCTCTTGTGTGAGGGAGACAGGCGTGTTACCTGAGGTCTTGTTGGCACTGCTACGAGCACGGCAGACTCCCTCTCTTCAGCTGCAGGTGCACCACGCAGATGAGGTGGAGGCCCACGCTAAAGGAAAGCCCATCGCACACCTGCGTTACACAAGGGTTAACATGGACGTTCAGAGCCATGCTGTGTCTCCTGTTGGAGTTCTGAGCAGTACTGTTAATCCAGAGAAACTTCCACCCAGCAGggattttatcattaatatcaCAGAGGTGATCGACGTGGGACACTTTTGGGGCTTTCGGACAGATGAGAACAGCGTAGAGAAACAGTGTCAGTTGACAGCAGCTCTAAACATAAGAGATCTGAGACCtgtatctgtctctctctatccaaACCTGCTCTGTGTGGCCCCCTTCAAAGATGGACAGCAAATGGCCAAATACTATAGAGCCAAAGTACTGCACATCCTTGGCAGCAATGTAGAGGTGTTCTTTGTGGATTTTGGTAACACCTCTGTGATCCCATGCAGTAGTCTGAGAGAGCTCCCATCTGACCTCACGAGTCCCCCCTTTCAAGCACAGGAGTTTTGCATCGCAGGCATGGGTCCATCTGCACAGTCGCTGATTCTTGGCGGACGTTGGAGCAGTCGTGCACGTAACCGCTTTAAGATACTTACAAGCGGCCGCTCTGCCATTGTATCCCTTTACTCCATTCTGCATGGTGTCATGCGGGTCGACCTGCGCATCTCCATGGAGGCGGGAGATGTCAGTGTGGCAGACCTCCTGGTGCAGGAGGGACATGCCTGTCACATACCTGAAAGCTTTGAGAGTCAGCAGTCCCATGATGTTCTGACGTCTCTGTATGAGGACATGGCCAGTGGCAGATTCACCCCTAGTTCTACTAGTGGCTCCTTGAACAGCAGGATGGAGGAAGACAAGCAGCTCATCAACGAGCTCCTTCAGCACTTTTGTGCCTCTAGCAGCAGTGCCCCCAAGTGCAAGGCTTTAGTTTATGGTCCCAGCAGCCCACATAAGGTCACCTTTCACAGCATGATCAGGATCAGCAACTTCAGGGCTGTTGGCATTGAGAGGGACAGTATTAACTCTGTAATGGTGAATGAATGTCCACAGAACTGGCATGAGAGGATGTTGGTGGCTGCATCTGTGTCTCTCAGCGCATCAGGTTCTCGTATTTTGCTGAAGGAAACATCTTTGATGCCTTATATCCACGGCCTTCCCTCAATTGTTACTATGCTCTTCACGCCTGTCATGGAGCTGCGTACCAATGAGGATAGGACCTGTTTTACTGGTGCTCTTTGTGGACTGGGCTGGAACTCCGTTTCCCAAAGTGCAGTGCTGCCCGAACATGACATTGAACTTGCCTTTAATGTAAAGGTTGATTTTGAGGACATCACAGAGATAAATGCTTTGAGAGGCACAGTGAACAAGCTGGTGTGCGACGGGCCAAACGGCCTGACAAACCTGAGTCCTGAAAAGATCAGCAACCTTCAGGAAGAGGCCCGGGAACGACTTGTTGGatTGTTCATTAAAAACCCTCCTAGACCAGAGTGCACACCTGTGTACTATGAGAAATTCAAGAAATGGAACCAGGTGGATCGCTCCCAGCAGATGGAGCTACAGGAGAAGGATGATGGGAAATCCAAAGGTGTCCTATTTCAGCTGCATCCAATCACTTTACTGAACATGTGAGGAGCATCACACACAAGAGAATCTAGATGATGATGGAAAAGCTTGAACGTTACTTCTGTTAAATGTGCAGTATTTTAGTTTTGCTAGTCATTTGTTACTTGATGGAGAAAATTTAATTTGCACTATTCAGGGTTCATGGATCTgtgttgtaaaaatattatttgactGCACTTTTTTGGTTCTTAAGAAACATACTtctatttttgatgttttaaaactgtctgttttaatttactttactgTTGAAGTTGAATGTGTACAGTAAATAACTTTTTCAAATtcctggacttttttttttttttttttttaattctagaaATTACTGCTGTCTCTACCCACTTTGAAGGCTATTATAGtagttaaatttaattttcacagTGTTTGTTCCATGCCGTCTGAAGCTGTACAATAGCTTTGTAaggagcgcgtgtgtgtgtgtgtgttcctcccTCCCTTCACTTTAGTTATTTAATCTTATTAACTCTTAAAGTTGTCACTTAACTGAAATTCACCCTATCACTCTTAAACATTTACTTGACTGATGCAGCCAtgcataaatgtta

Function

GO:

id name namespace
GO:0009566 fertilization biological_process
GO:0030154 cell differentiation biological_process
GO:0043046 DNA methylation involved in gamete generation biological_process
GO:0007275 multicellular organism development biological_process
GO:0007283 spermatogenesis biological_process
GO:0031047 gene silencing by RNA biological_process
GO:0034587 piRNA metabolic process biological_process
GO:0007140 male meiotic nuclear division biological_process
GO:0071547 piP-body cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K18408 TDRD9; ATP-dependent RNA helicase TDRD9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137594 lncRNA upstream 7192 11514477 ~ 11533930 (+) True G92958
TU137606 lncRNA upstream 12042 11525357 ~ 11529080 (+) True G92965
TU137599 lncRNA upstream 21779 11518620 ~ 11519343 (+) True G92962
TU137585 lncRNA upstream 31234 11509238 ~ 11509888 (+) True G92952
TU137548 lncRNA upstream 79006 11414223 ~ 11462116 (+) True G92923
TU137626 lncRNA downstream 8814 11566030 ~ 11618812 (+) True G92974
TU137632 lncRNA downstream 46481 11603697 ~ 11604159 (+) False G92977
TU137645 lncRNA downstream 71143 11628359 ~ 11628566 (+) True G92984
TU137667 lncRNA downstream 170607 11727823 ~ 11728484 (+) True G93001
TU137672 lncRNA downstream 194723 11751939 ~ 11758609 (+) True G93006
XM_043255343.1 mRNA upstream 7727 11531855 ~ 11533395 (+) True mettl18
XM_043255618.1 mRNA upstream 33183 11486772 ~ 11507939 (+) True antxr1d
XM_043254670.1 mRNA upstream 60126 11477208 ~ 11480996 (+) True gdf10a
XM_043254615.1 mRNA upstream 86411 11444433 ~ 11454711 (+) False ptpn20
XM_043254616.1 mRNA upstream 86411 11447557 ~ 11454711 (+) False ptpn20
XM_043254959.1 mRNA downstream 20446 11577662 ~ 11592600 (+) True lrrc9
XM_043254805.1 mRNA downstream 36949 11594165 ~ 11602678 (+) False pcnx4
XM_043254803.1 mRNA downstream 37106 11594322 ~ 11602678 (+) True pcnx4
XM_043254806.1 mRNA downstream 49716 11606932 ~ 11621476 (+) False ppm1aa
XM_043254807.1 mRNA downstream 49716 11606932 ~ 11618496 (+) True ppm1aa
TU137330 other upstream 322947 11215492 ~ 11218175 (+) True G92772
TU137332 other upstream 326035 11213526 ~ 11215087 (+) False G92772
TU137252 other upstream 572208 10964873 ~ 10968914 (+) True eif4ebp2
XR_006252423.1 other upstream 1121528 10418822 ~ 10419594 (+) False ly6pge
XR_006252428.1 other upstream 1211843 10329144 ~ 10329279 (+) True LOC122357143
TU137640 other downstream 14444 11571660 ~ 11577859 (+) False lrrc9
TU137630 other downstream 46481 11603697 ~ 11604852 (+) True G92977
TU137635 other downstream 46481 11603697 ~ 11604224 (+) False G92977
TU138047 other downstream 1014415 12571631 ~ 12575212 (+) True G93296
XR_006252318.1 other downstream 1029670 12586886 ~ 12588853 (+) False mgme1

Expression Profile