RNA id: XM_043254755.1


Basic Information

Item Value
RNA id XM_043254755.1
length 3838
RNA type mRNA
GC content 0.49
exon number 25
gene id pacs2
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 14129394 ~ 14159166 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCGAGTGTGCGAGAGCGCAGATGCGCCAGTCGCTGGAACGACCCGGGGGTCACGTGACTTCCTGCGGCGAGCGGCTGCTGCAGTTTCTTGTCGCGAGCGCTCGGTGCACGGTGTGGAAACTCCGATCCACAGCGGCATGAAGCTGCGCGCAGACGCCGCACGAGAATCGCTGCGCCACCCGTGAACGACAGCCAGGCTCCGTAGAGCAGCGGATTAACGGCGGGGAGGATTTAGTCGCAGCGCGTTCGTGAGGGAGAAGTTTGCTCACTGTGTCTGTGGAGGTGAACGGGACACCAGCAGCGAGCATGGCGGAGAGAAGTGGCCGGTTAAGCTTCCCCGGGAGCGGGGCGCTAAACAGACCGGTGCCTATGAACCTCTTCGCCACCTGGGAGATAGACGGCTCTTCTCCTAACTGCATCCCCAGGCTGTGTAGTCTGACTTTGAAGAAGCTAGTGGTGATGAAGGAACTTGACAAGGAGCTGATTTCTGTCGTCATTGCAGTCAAGATTCAGGGCTCCAAGCGAATCCTGCGCTCTCATGAGATCGTGCTGCCCCCTGCTGGTGGGGTGGAGACTGACCTCGCTCTCACTTTCTCACTACAGTACCCTCATTTTCTGAAACGCGAGGGAAATAAGTTGCAAATCCTGCTTCAGCGGAGGAAGAGGTACAAAAACCGGACAATTTTGGGTTACAAAACGCTGGCAGCTGGCTCTATAGACATGGCAGAGgTGATGCAGCATCCTGCAGAAGGTGGGCAGGTCTTGGCTCTTTGCAGTAATCAGAAGGAGTTTCTAGGTAAAGTTGCTGAGATTTGGATCTATTCCCTGTCCAGTCAGCCCATAGACCACGAAGAAGCAGCCATTCTCGGACAGAAAATCAAATGTTCTGATAATTACTCAGAAGAAGAGTATGAAAGCTTCTCATCGGAGCAGGAGGCCAGCGATGACGCAGCACAAGGACAgGATCTTGAGGACGACGAGTATGAGATGAGGAAACCTAAAAAGCAGAGGAGGTCAATAGTCCGCACCGCATCGATCACCAGGCAGCAGAACTTTAAGCAGCGCGTGGTGGCATTGCTCAAACGGTTCAGAGTTTCTGATGAGGTGTTAGACTCGGAGCAGGACCCAGCCGAGCCACCTCCGGAAGTAGAAGAAGATCTGGATCTGGAGAGTTTAGAGTTTGAGAATCCGAGTGACAGTGGACCAGATCTGGATGATGATGAAAGTGTTCTCAGCACCCCAAAACCCACACTCAAGCCATATTTCGAAGGAATTTCTCTATCCAGCTCTCAGACAGAAATCGGCAGCATTCACAGCGTTAGGAGTCACAGAGAGCCCCCCAGTCCAATGGATCCTGATAAAATAAGGACTGTAGGTGGAAAATTTCACATGGATAATGAATCTGATAATGTTTCAATGGGCCAACCTGAGGTTGTGACGCCGACCACAGAACTGGAGATGATGGACAACATGGACACTTTCATGGAGAGGTTGCCTCCTACTGGCCGGATGACCAAAACAGAGTCACTTATCATTCCGTCCAATCGGGTGGAGCCAAAGCTGGCAGGGCGGCGGGGACGAAGCACATCACTTAAAGAGAGACAGACTAGTCGACCGCCCAACGAGAGAGCCAACAGTCTGGACAACGAACGCTCATTTGACACGCGCTGCCACCTACAGATTCCACGTAAAACTGTTTATGACCAGCTGAACCACATCCTGGTGTCAGACAGCCATCTTCCAGACAGCATCATCCTCATTAACACCTCCGACTGGCAGGGCCAGTATGTATCTGAGGTGTTACAGAATCACGGTCTTCCTGTCGTGTGTACGTGCACCACGGCTGACATACAGGCTGCGTTCAGCACCATCATCTCTCGCATACAGAGATTtTGTAACAGTAACTCAGTCACGCCGCCTCCTGTGCGGATTGGAGTGGCAGGAGCTCAGCATTATCTGTCTGTCGTTTTGCGTTTGTTTGTGGATCACCTGACGCATAAAACCCCCGACTGGCTCGGGTACCTTCGATTCCTTATCATCCCACTTGgggttCACCCAGTGGCTAATTATCTGGCCAGTATAGACTACAGATATAACAGCTTGTTCCAGGACTCAGCGTGGAGAGATCTTTTTCACAAACCAGAAGCACCAACCTCAGTTCAGGAGAGTCCAGATGTGGCTTCCAGAGTAACACAGTACATGCTGGGAGCAAACGGAGCTCATCAGCTGCCCATAGCAGAGGCTATGCTTACCTATAAGCAGAAAAGGAAAAAGagctttcattttgattttgctgTAAGTCCTGATGAAGACTCGTGTCAGAAGTTCATTCCTTTTATTGGGGTGGTGAAAGTTGGGATTGTTGAACAAACGTCTGCCACATCTGgcGATTCGGATGACGCTGCTCCTGTAGGATCGTCTCTTCTCTCGTCCACTCCTCCTGCGCAGATCTCACCATTACTGAAAGAAGCATCTCCAACGcctccttcttctccttctgTGCACACGTCCAGCTCTCTTGGAGGAGGTCAGGGGGAGCTGATGGGTCTTCAGGTCGATTACTGGATTGCTCCGtcagaaaggaagaaagaagtGGAGAAGAGAGACTCCTCTGCCAAAAACACGCTCAAGTGCACCTTCCGTTCCCTGCAGGTTAGCCGCCTCCCACTGGGCGGAGCTGAGACGACACATCAGCCAACCATGTCCATGAATGTTGTCACCAAAGAGAAGAATAAGAAGGTGATGTTTCTGCCTAAAAAGACCAAGGATAAGGAGGCGGAGTCTAAGAGTCAGGTGATAGAGGGCATAAGTCGACTCATCTGCACAGCCAAACACCAGCAGACCATGCTGAAAGTGTTGATAGATGGAGTAGAGTGGAACGATGTGAAGTTTTTCCAGCTTGCGGCTCAGTGGTCATCTCACGTTAAACACTTCCCGCTTGCCATCTTCGGACCCTCCAAAGGGCCTTACTAAACTACGGCCTCACATCTCCTCCTCTACTTTACGGCTGCCTTCACACTCAGTGCTgcctgatgtttttatttaaaatatctgctTTCTCAcggtttgtctgttttattttcgtTGACATTTGATTGTTCTTTTATGAAAGACTTGATGCGGTCTTGGCCACGGGGCATATTTTTCTGGACCGCGTATGTTAAAACCCTCCAGTGTTCATAGTGAAATGACTAATGAACTGAATCTTTAAAACTGATCTAACTCCGTAACTAGTGAGTTTTTTCCGGTGGTTTTATGTCATTCTGCAAATGCGGCATCCACACATTTCAGCAGCCAGCACACTTGTGGGAGAACAAACCAGCAAAAAAGGAGAAAGGAACCGTGCTTTTGTATGTTAAAAGGACAAAATCTGGATTGGATTTAGCTTTGGATGGATTTTCCAGGTGGCTTGGCTTTATTCTGAAGACAGCGAAAGCgttttctctctcgctctatAACCTCAGCGAGGTCAGAGGATCTCTCGAAGGTTAATTGCGTCTTTGTGTTGCAGTCTCCACCTCGTCGTATGTGGTTTACTTtgtggtttgtttgtgtgtgtgtgtgtgtgtatgaatgtattcACTGAAGGTACTGAACGctaaagcacttttaaaatattactagattgagtttttgttatataatgcTTCCTGTGGTGCACAGCGCTGTTCACTCCAGCTAAAAACTGCAGCAAAGCTTTGTGGGAATTTTGGAGACAGAAACTGGACTGAGTGTCTGTGTCTACATTAGACGGACCAGTGTAAAACCTGTGTGCTGcactctttaaaatgttttttaatgtaaacgtTTCCTAGAATGAAATGTACGTTCTGTTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138919 lncRNA downstream 199100 13761046 ~ 13930294 (-) True G93879
TU138913 lncRNA downstream 224692 13903754 ~ 13904702 (-) False LOC122356386
TU138877 lncRNA downstream 440768 13685947 ~ 13688626 (-) True G93855
TU138489 lncRNA downstream 463134 13665809 ~ 13666260 (-) True G93591
TU138485 lncRNA downstream 465483 13661750 ~ 13663911 (-) True G93588
TU138967 lncRNA upstream 28374 14187539 ~ 14189904 (-) True G93905
TU138968 lncRNA upstream 28374 14187539 ~ 14189904 (-) False G93905
TU138970 lncRNA upstream 28374 14187539 ~ 14189904 (-) False G93905
TU138971 lncRNA upstream 28374 14187539 ~ 14189904 (-) False G93905
TU139118 lncRNA upstream 713267 14872432 ~ 14873014 (-) True G94003
XM_043254761.1 mRNA downstream 2309 14113386 ~ 14127085 (-) True dcaf5
XM_043254751.1 mRNA downstream 21053 14083484 ~ 14108341 (-) False actn1
XM_043254762.1 mRNA upstream 1496 14160661 ~ 14164414 (-) False srsf5a
XM_043254763.1 mRNA upstream 5569 14164734 ~ 14171855 (-) True LOC122356233
XM_043254764.1 mRNA upstream 13472 14172637 ~ 14176874 (-) True LOC122356234
XM_043255292.1 mRNA upstream 18985 14178150 ~ 14184493 (-) True lgals3a
XM_043255293.1 mRNA upstream 23194 14182359 ~ 14184486 (-) False lgals3a
TU138946 other downstream 46636 14079532 ~ 14082758 (-) True LOC122356235
TU138915 other downstream 217557 13910339 ~ 13911837 (-) True G93875
TU138887 other downstream 432602 13696072 ~ 13696792 (-) False map3k4
TU138426 other downstream 561469 13564422 ~ 13567925 (-) False srd5a2b
TU138208 other downstream 1532092 12557077 ~ 12597302 (-) True LOC122356414
TU138948 other upstream 1158 14160323 ~ 14164348 (-) True srsf5a
TU138949 other upstream 1158 14160323 ~ 14164348 (-) False srsf5a
TU138950 other upstream 1158 14160323 ~ 14164348 (-) False srsf5a
TU139176 other upstream 1081585 15240750 ~ 15242797 (-) False col9a1b
TU139178 other upstream 1091410 15250575 ~ 15253281 (-) False col9a1b

Expression Profile