RNA id: XM_043254772.1



Basic Information


Item Value
RNA id XM_043254772.1
length 906
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC122356239
representative True

Chromosome Information


Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 2862008 ~ 2865825 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GGAAGGATTCGGTTCTTTGTTCTTGACGATTTCGGTGGTCTCTACAAAGCTGGATATTTATAGAAGCAAACCCTCGACGTCTGCATGCGCTTGTAAATTATTTGGGCCCGACAGAAGCCAAAAATATCCTAGGTTTTGCAGCATCTTTAAGGAACGTCACAAAGCGCTCAAGCACTAATCAGCAGGTGATTGAGCTCACCTGGGTTCCCGTGCAAGGCCTCTGAGAGTCCGTGTAGGAAACAGTACTGTTGACCAATGGGAAGTGTGCCTGCTCTCTGGAGGACTGCAGCACACGGCTGGTGGTTGAAGTGTTGCTGAACAGGAAGTTGCTGAGTAGAATTGAGAAAACTTCAACAGACATGAGGGTCTCTGATCGGTCTCTAGTCTTGCTTTTCTTAGCAGGCTTAAGTTCACTCGAGAAAGTTCCTGCTCACACGTTCTTCGACCGACCGATCCCAGGAACTCTACAGAACGTCAGTAAGAATGACACCGGGGTGAAGGAGGCCGTCCTGACTGGAACCTACtcgtttaataataaatccaaCGATGCCTTCCTGTTCAAAGCATCAACTGTTGATGACGCAAAGAGACAGATCGTCAGAGGCATCCGCTACGTCCTGGAGGTGGAGATCTCACGGACCGTGTGCAGGAAGAGGGGCAGCACCGAGGACCTCAACAGCTGTCCCTTCCAGACGGACAGTGTGCTGCAGCAGaCATTCTTCTGTCACTTTGATGTCTGGTCCATTCCGTGGATGAAGACAATGTCAACCACATCTTTTGAATGTCGTTCAAATGATACATTGTGAAATTTGTTTTCGCCCGAAATGCAGCGCTTACTTAAACCCAAACCGAATGTGAAAATAAAGCACTGATTGAGCATCATGTGCAGTGACCTTCGGTTCATCA

Function


GO: NA

KEGG:

id description
K13903 CST7; cystatin-F

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU133705 lncRNA downstream 236735 2624904 ~ 2625273 (-) True G90312
TU133683 lncRNA downstream 238099 2621236 ~ 2623909 (-) True G90300
XR_006252293.1 lncRNA downstream 359550 2500535 ~ 2502458 (-) True LOC122356206
TU133632 lncRNA downstream 380366 2481370 ~ 2481642 (-) True G90271
XR_006252342.1 lncRNA downstream 418524 2442247 ~ 2443484 (-) True LOC122356497
TU133877 lncRNA upstream 31213 2897038 ~ 2897468 (-) True G90408
TU133906 lncRNA upstream 77885 2943710 ~ 3194742 (-) False G90431
TU133908 lncRNA upstream 77885 2943710 ~ 3194742 (-) True G90431
TU133910 lncRNA upstream 84473 2950298 ~ 3201099 (-) True G90432
TU133916 lncRNA upstream 109171 2974996 ~ 2977696 (-) True G90437
XM_043254771.1 mRNA downstream 8624 2848173 ~ 2853384 (-) False si:zfos-1056e6.1
XM_043254770.1 mRNA downstream 9687 2848173 ~ 2852321 (-) True si:zfos-1056e6.1
XM_043254726.1 mRNA downstream 253140 2607080 ~ 2608868 (-) True LOC122356217
XM_043255829.1 mRNA downstream 364587 2488427 ~ 2497421 (-) True LOC122356775
XM_043256325.1 mRNA downstream 381679 2478583 ~ 2480329 (-) True gsta.1
XM_043254768.1 mRNA upstream 25562 2891387 ~ 2913514 (-) True LOC122356237
XM_043254769.1 mRNA upstream 27882 2893707 ~ 2913516 (-) False LOC122356237
XM_043256387.1 mRNA upstream 87414 2953239 ~ 2955452 (-) True tuba4l
XM_043254523.1 mRNA upstream 184723 3050548 ~ 3052828 (-) True LOC122356071
XM_043254524.1 mRNA upstream 184723 3050548 ~ 3052788 (-) False LOC122356071
TU133704 other downstream 234851 2626328 ~ 2627157 (-) True G90311
TU133689 other downstream 276677 2584196 ~ 2585331 (-) True G90304
TU133469 other downstream 616930 2151837 ~ 2245078 (-) True G90161
TU133318 other downstream 1170073 1684449 ~ 1691935 (-) True LOC122356758
TU133116 other downstream 1305005 1556169 ~ 1557003 (-) False LOC122356439
TU133931 other upstream 124593 2990418 ~ 3021862 (-) True G90445
XR_006252267.1 other upstream 1807141 4672966 ~ 4689168 (-) False LOC122356061
XR_006252269.1 other upstream 1807141 4672966 ~ 4689168 (-) False LOC122356061
XR_006252268.1 other upstream 1807141 4672966 ~ 4689168 (-) False LOC122356061
XR_006252266.1 other upstream 1807141 4672966 ~ 4689168 (-) False LOC122356061

Expression Profile