RNA id: XM_043254790.1


Basic Information

Item Value
RNA id XM_043254790.1
length 4682
RNA type mRNA
GC content 0.52
exon number 19
gene id ptk7b
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 22185040 ~ 22227004 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaggaggaggaggaagagggacAGAGTGAAGTGACCCGCTGGTTCTTACGGACCGCCGTCGATCCGCGCCGAGTCTCTCCCAGGAATACACCGATCACGGAAGTCTTCCCCGTCGGTTAGGCGCGCGCGTGTCGTGAACGAGAACAAGCAGACTTTGTAAAGGCGGAAAACATGGACGGATCGCCGGGGACCGACGGGAGCAGACGCACACCCGACGCGCTGCTCGCCGCCTTCACCGTCGCTCTGAAAGTCTTCATCATCCAGGCGTCTTCTCTTCACTTCTCCGAGGAGCCCCAGTCTCAGGACGCGTTACACGGACGCAGTGCTATCCTGCGCTGTGAGCTCAGCGGCCCGCAGGACATGCTCTTCTGGTGGACTCAGGACGGCCGTCGCGTGCAGGACTCGAACCGCCGCTTCCAGGAGGGCAGCAACCTGAAGTTCACGGCGGTGGACCGTCACGAAGACGTCGGTAGTTTCCAGTGTGTGGCGTCCAGCAGCTCCACCGGAGAGAGCCTGACCTCCGCCAACGCCTCCATCAACATCAAATGGCTGGAGAGCGGGCCAATTACAATGAATGAACCCGCCTCAGAGGCGGAGCTAGAGGAGGCTGAGCGAATCGTGCTGCAGTGTCACATTGATGGACATCCACGGCCGAGCAGTAAATGGTTCAAAGATGGAGGTCAGCTGGACAGAAAGGACCGGATCTTGACGCTGACCAATCTCAGCACCGGGGATTCTGGGATATACTCCTGCTGTGCTCAGAATGCTGCTGGGAAAGTGTGCAGTAACAACAACATCACCCTCAATATTTTTGataaGTCTGTTCCTCGTGTGCTGGTGGCTCCGGTGGATCAGGTGGTTCTGCGTAACGAGGAGGCCGTGTTTCACTGTCAGTTCAGAGCCAAGCCGCCGCCGCGGATCGACTGGTTCCACGACGCAGAACCCATCAACAAATCACAggtTGTGGTGTATGCTAACGGCACGCTGCACATCAGTCAGGTGCAGCAGCGGAGCACAggtgtgtataaatgtgtggCTCAGTACggagaaaacaaacaagtacATGTGGAGGCAGTGCTCAGGATCGCAgagatCGGGGACATGGGCGGGCGTCTGCTGCGTGTGTTCTCTGCGGGCCGGAGCAGGCGTGTGCGCTGTGACCCTCCTCGGGGTCAGCCGGAGCCTCAGGTGTGGTGGGAGCGCGCTGGAGCTCGGGTGGGCTCTGAGGGTCGAGTCTATCAGAGAGACGGAGATCTGATCTTCAGCCCCGCAAACAGATCAGACTCGGGACTCTACACGTGTGTCGCTCGCAACACAGCCGGTCAGAAGCAGCAGGAGCTCCTCGTCACCGTAGCCAccTCTCCGGAGTGGATCGTCCGTCCTCAGGACACACACGTGGAGGAGGGTCAGCCGGGGTTTCTTCACTGTCAGGCTCTGTCCACTCCTGAGCCGCGGGTCACATGGTACCGCAAGAGCGCGGCGATCAGTGAGGAGgGCTCTCGTTATAAGCTCTTCTCTAACGGGACTCTGAGGATCAACAGCGCTGAGGTGAACGACGCTCAGAcgtacagctgtgtgtgtgtgacggaggCCGGGTCACTCACCGGACACGCACGGGTTCACATTCtggACGGCGCTGATCTCCCGTCTCACGTCAGTCAGATGGACGGAGTTCTGCTCTTCAGGACAGTGACCCGTGCCGATGGAGGAAACTACACCTGTGTGGCGTCCAGCAGCTCCTCAGGAGagagtgacctctctcctctctcgctCCACTggatgctctctctctcagacttCTCTCTCAGCAGCAGCTCCAGCAGGTTTCAGAAGATGCCCAACGGCTCTCTGGTCATTAGTGAGGTGAGCACCGAGGACACAGGTATCTACACCTGCGTCGCTGGAAACATCTGCAGCATCAGAGACACGGCAGCACAGCTCTACGTCGTCGAGAAGCCTGTGCACCCACGCACTGAAGATGAGGATAAGAGTCAGTTTAAGATGTTCCAGACGATCGCGCTGTCGGTGGCCGTGGCCGTGGCGTACATCATCGCTGTGCTGGGACTGATGTTCTACTGCAAACAGAGACGCAAGAACAAACGTCTTCAGAAGAACAGCGCTGGAGAAGAGCCTGAGATGGAGTGTCTGAACGGCGGCGCTGTCCAGCTGAACGGCCACAGGATGTCTGAGATCCGTGAAGAAGTGGCTTTAACCACTATTGGACCTTCAGCCAACTCCGAGAAACAGCAGAGCTGCGGTGATAAGCTACACTTTCCCAGAGCGCACCTGCAGACCATCACTACACTGGgTCGTGGGGTGTTTGGCGAGGTGTTTCTGGCTAAAGCGAGGTCGATAGAGCAGGCAGAGACCGAGACGCTGGTGCTGGTCAAGAGTTTAGAGAGCAGCGAGGAAACGCACCGAAGCGAGTTCAGACGAGAGCTGGAGATGTTCAGCAGACTCCATCACCCTCACGTCGTACGACTGCTGGGGATCTGCAGAGAAAGCCAGCCACATTACATGATCCTGGAATACGTGGATCTGGGCGATCTCAAACAGTTTCTCAGGATATCAAAAAGCAGCGACGAGAAACTCAAGCCGCATCCCATCAGCACTAAAACTAAAGTCTCTATCTGTGCTCAGGTGGCTCACGGGATGCAGCACTTATCAAACAAGGGTTTTGTGCATAAAGACCTGGCGGCCAGGAACTGCCTGATCAGCGGCCAGAGACACGTCAAGGTGTCTGCTCTCGGTCTCAGCAAAGACGTGTATAACAGcgagTACTACGAGCACAGGCAGGTCTGGATCCCGCTGCGCTGGCTGGCGTCTGAGGGTGTGTTTGAGGGAGAGTTCTCCGGCAGGACGGACGTCTGGGCGTTCGGGGTGCTGATGTGGGAGGTGTTCAGTCTGGGAGAGCTGCCCTACCTGGCTCTCAGTGACCAGCAGGTGCTGGAAGgtCTCCAGGCTGGTACTCTGCGCTTGTCTCCTCCAGCGAAGTGTCCTGCTCACGTCTGCAGTCTGATGAGCCGCTGCTGGGCGTCCAGCCCTAAAGAACGGCCCACGTTCAGCGAGATCCTTCAGATTCTGACCGATTCTCCCACAGACACCAAAGTCTAGAGGATCACGGCTGCAATCAGAGACTCTGTCACACACATTTCAGACGTGAGAGTCTGCTTCGAGACCCGCTCAGGATCAAACTGTCCCATTACTGATCTGTTTACACTTCTGTAGAAGCTCCTTCCTCTCGCCGGAGCCTCAGGGACCCCGAggatgacctttgacctctgcaGCGCAGGACAATCGCAGATCCATCAGGTTACAGACGCAGGAGGAGGTACTGCACACACATGATGCTGGAATCACGTCACGCCTGCGGCTCTCGTCACGCACTGGAACCAGTGCATGCagtcgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgtgtgtgtgtgtgtgtgcgcgcgcgcgtgcgtgtgtgtgtgtgtgtgtgtgttttacaggttGATGTTATGTCACGAAACATTAGTGGAGTTCAGTCAGAGATTATTGATGCAGTCAGAGATTGACATACaactatataatacaatattaacaaatattcaCTAAttaacctgtgtgtgtgtgagaagagaGATAGTTCTTAGTGATGATATGATCTTGATGTTTCTCAGAGGTGCTCACAGGTCAGCTGACTGtgttactgtaataaataaatatgcaacgCCTCAGATTCTAAGCCATGATTAATTCCCCGCTCACTATCCGTCTCCTCGAATCCTTCTGGAGACAAACACACCTGATAAACTGAAACGATGTATGGATTACGCTTCAAACTTAAGATGTCATGttagatcagtggttctcaaccggGTCCAGTAGGAGGCCtcaaacacattatttaaaataagatgaaataagcaagaatttttttatattacaattgttttatatatatgaggTATCCtgattttaaaagtgatttctAGAGCTGGAAAAtgccatgaaaatgaatcaaatgttaaaataccacgggcattttaataacaaatacacatttaaaaaaaaactaagacaTAATCCTGATCCAGTGAATCGCAAATGACTGAAAAAGTCACATAAATTCATTGGTTTGAAACATTTAGGTCCTAAAAGCTCTGGGATGGAGAGAACCAGGAGTGAAGGAAAACAGCAGATATTATAGAGACTGGACTGGAGAAGCGCTGCTGTGAGGTTATGATGAAGGCTTTGTGTCTCTTTGGTTTTAATGTGGCCAGTGTTGTAGAAACACACCCCGGACTGTCTTCATCAGGTGATCAGATAAAAGAACAGGTCAATTTTgacttttacaaataaaagtgcCTAGAACATGAAGGacttatttgctgtttttttttttgcagtatctTTTGTAATGCGgttaatgcttgtttttatatactcttttcatatgcattattattattgttgttgttgttgttatttgttttaatctctGTGATCATCATCACTGTCTGTTCATGGTTATTTTTAAGGCAGGCTCTCTTTTATATTCTGCTTTATAAAGGTCACAGTAATCCAGATGTAATGCTGCTCTCATTAAACAGTCATGTTTTAACAGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252426.1 lncRNA downstream 42268 22137388 ~ 22142772 (-) True LOC122357128
TU141813 lncRNA downstream 48649 22135936 ~ 22136391 (-) True G95922
TU141782 lncRNA downstream 64598 22114696 ~ 22120442 (-) True G95902
TU141784 lncRNA downstream 144934 22039782 ~ 22040106 (-) True G95903
TU141779 lncRNA downstream 310111 21874513 ~ 21874929 (-) True G95899
TU141833 lncRNA upstream 1180 22228184 ~ 22230539 (-) True G95933
TU141841 lncRNA upstream 21052 22248056 ~ 22370625 (-) False G95938
TU141836 lncRNA upstream 69337 22296341 ~ 22297227 (-) False G95936
TU141845 lncRNA upstream 76301 22303305 ~ 22303781 (-) True G95941
TU141840 lncRNA upstream 80064 22307068 ~ 22370625 (-) True G95938
XM_043254898.1 mRNA downstream 1866 22157665 ~ 22183174 (-) False srfb
XM_043254899.1 mRNA downstream 1867 22157665 ~ 22183173 (-) True srfb
XM_043256219.1 mRNA downstream 28196 22152035 ~ 22156844 (-) False tmem254
XM_043255712.1 mRNA downstream 133354 22041455 ~ 22051686 (-) True pwwp2b
XM_043254889.1 mRNA downstream 160430 21908358 ~ 22024610 (-) True LOC122356328
XM_043255446.1 mRNA upstream 4445 22231449 ~ 22250313 (-) False klc1b
XM_043255444.1 mRNA upstream 4445 22231449 ~ 22250313 (-) False klc1b
XM_043255445.1 mRNA upstream 4445 22231449 ~ 22250313 (-) False klc1b
XM_043255443.1 mRNA upstream 4445 22231449 ~ 22250313 (-) False klc1b
XM_043255450.1 mRNA upstream 6788 22233792 ~ 22250313 (-) False klc1b
TU141795 other downstream 28181 22151742 ~ 22156859 (-) True tmem254
TU141794 other downstream 28216 22151742 ~ 22156824 (-) False tmem254
TU141816 other downstream 41070 22138329 ~ 22143970 (-) False LOC122357128
unassigned_transcript_1933 other downstream 531359 21653612 ~ 21653681 (-) True trnag-gcc_72
unassigned_transcript_1932 other downstream 610719 21574251 ~ 21574321 (-) True trnag-gcc_71
XR_006252351.1 other upstream 5810 22232814 ~ 22250313 (-) False klc1b
TU141832 other upstream 9100 22236104 ~ 22238570 (-) True G95932
TU141837 other upstream 69337 22296341 ~ 22297227 (-) True G95936
TU141850 other upstream 99706 22326710 ~ 22329260 (-) False ypel5
TU141887 other upstream 144563 22371567 ~ 22438998 (-) True LOC122356262

Expression Profile