RNA id: XM_043254797.1


Basic Information

Item Value
RNA id XM_043254797.1
length 1285
RNA type mRNA
GC content 0.39
exon number 6
gene id LOC122356270
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 16543081 ~ 16546492 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTAAGTTCAGTTTGTATTTCAGCAACAGACTGTAAGGCTGCAGACATGACTTGCATGTTGAAGAAATTTTACCACATAGCTGCCTTCTGCTGGTATGTCTTTGTCATTCAGTCTGTTTATGCGAAACGAGATTCAGATATACCACCTGGGATGTTTGTGTATGGCGGACCCTGGAAATACCTCACATTTTTAAACCTGATCTTACAGATGATGTTTTTTGGACTGGCATCTGTGAATGACCTTCAGCCTGTTGGGAAAGGCTCCAAAATGTCACTCCTCTGCTTCTGCAAGGACTTGCTCTTTTCTGTCTTTGCATTTCCAGTGGGGATGTTTGTAGTTCTGCTGTTTTGGGTGATCTTTGCTTATGATCGACAACTGGTCTATCCAGCTTCGATGGACAGCCTCTTCGCTCCATGGATGAATCATGCTATGCACACTCTAGTTCTCCCAATCGTGTTTGGTGAGATCCTGCTGGAGCCACATATCTATCCCAAAACGAAGAACGGTTTGGCAGCTTTGGGGTTTGTCGGTCTCGCTTACTTAGGATGGGTGGTTTGGGTGTATCTGACGGTGGGAATCTGGGTCTACCCTATACTGGGGCTGTTCAGCAGCTCGGGATTGaccgtcttcttcttcttcaacgTGCTTGTGCTGGCTCTGCTCTACTTGCTCGGACAAACTTTGAACCGTAAGGTTTGGGGGAAAAAACATCCAACATTTACAAGAACGTGATGACACACGATTGCTGTAAAATGTTTCGGTGAACTGTTAAGAATTATTTCCAAGTGGCGTCAATACGGACATCTGATGCTGTTCATTTGTAATAAGCACACTTGCATTATCatagttttgtatatttttttttatctgcgaCTACTTATGCTAATGTAAGTTTGAAACTGCGATATGTATCTGATGTTATAGATATTTACACTAAAGCTAGTGTCCTCTAACAAGTTAAATCAAAAACTATTACTAACTACTAAAGTATGGTTCATATCTGTTCACTTATTTAATGGCTATTTAATTAATAAGacataattaaactttattttgagtATTTGTGCACAATGCATATTTCTTAATGTTAAGcctaaaatatgctttaatgtCAGTGTTAATGAGGACTGTATATGATATTTGAATACTAtctgtctttaaatgcaagatatttaagaCGTGCCTGAAGTATACTTTCAATAGCtccactttagcacaatcatATATACTTCAGTATCTTTAGTTGGAGTTCAGCAttattaagaacaaaaaaaaattgttagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139711 lncRNA downstream 24255 16515857 ~ 16518826 (-) True G94425
TU139701 lncRNA downstream 110651 16430674 ~ 16432430 (-) True G94416
TU139699 lncRNA downstream 112788 16429841 ~ 16430293 (-) True G94414
TU139696 lncRNA downstream 119288 16422666 ~ 16423793 (-) True G94411
TU139539 lncRNA downstream 166158 16376573 ~ 16376923 (-) True G94308
TU139759 lncRNA upstream 21423 16567915 ~ 16569250 (-) True G94453
TU139762 lncRNA upstream 46933 16593425 ~ 16594731 (-) True G94455
TU139834 lncRNA upstream 438014 16984506 ~ 17015657 (-) True G94511
TU139837 lncRNA upstream 438014 16984506 ~ 16992084 (-) False G94511
TU139854 lncRNA upstream 475611 17022103 ~ 17030063 (-) True G94516
XM_043255510.1 mRNA downstream 4600 16519536 ~ 16538481 (-) True btaf1
XM_043255680.1 mRNA downstream 55406 16469935 ~ 16487675 (-) True march5
XM_043255806.1 mRNA downstream 97342 16432695 ~ 16445739 (-) False LOC122356747
XM_043255805.1 mRNA downstream 97345 16432695 ~ 16445736 (-) True LOC122356747
XM_043254968.1 mRNA downstream 181276 16335024 ~ 16361805 (-) False LOC122356349
XM_043254831.1 mRNA upstream 694 16547186 ~ 16557976 (-) True fam83ha
XM_043256166.1 mRNA upstream 25056 16571548 ~ 16592072 (-) False lrrfip2
XM_043256176.1 mRNA upstream 25056 16571548 ~ 16592072 (-) False lrrfip2
XM_043256167.1 mRNA upstream 25056 16571548 ~ 16592072 (-) False lrrfip2
XM_043256169.1 mRNA upstream 25056 16571548 ~ 16592072 (-) False lrrfip2
unassigned_transcript_1928 other downstream 95319 16447691 ~ 16447762 (-) True trnah-gug_23
TU139697 other downstream 116546 16425697 ~ 16426535 (-) True G94412
TU139489 other downstream 250715 16290154 ~ 16292366 (-) False cisd1
XR_006252286.1 other downstream 380328 16014317 ~ 16162753 (-) False pcdh15a
unassigned_transcript_1929 other upstream 1172615 17719107 ~ 17719179 (-) True trnav-cac_10
unassigned_transcript_1930 other upstream 1173142 17719634 ~ 17719706 (-) True trnav-aac_26
TU140311 other upstream 1999089 18545581 ~ 18672893 (-) True LOC122356088
TU140313 other upstream 1999089 18545581 ~ 18672893 (-) False LOC122356088
TU140314 other upstream 1999089 18545581 ~ 18672893 (-) False LOC122356088

Expression Profile