RNA id: XM_043254803.1


Basic Information

Item Value
RNA id XM_043254803.1
length 4896
RNA type mRNA
GC content 0.49
exon number 11
gene id pcnx4
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 11594165 ~ 11602678 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tctataaaaaataataataataaaatcgcCATGTGGAGAAATGAACGGACTTTACGCTCAAACGGGAGCGGCTAACGCTAGCCGCGCTAACCAGTTTGTAGCCGCTTTCTTGCCTCTGTCCTTTATCTGCTGTGGTTGGAAGAAAGCAAGACGAGATTATATTGTAATACGATATAAGAgttgtgtgttttgttattgtaaCGGTCTGTAAACCGGTTGTCACGTTCATGTTTGTCTGTTGTCATAGCTGCCGTGTTAGCATGTGAACGGATCACAGGATACAAATCAACAAGACTGCATTAAAAACGTAAATCTGAGGATTATAGCCACAAATCAAAGGATAAGAGCACATCATTCACAAGATAAAACCCGTGAAGTCACTGGTTTGATGCTGATTGACTGCACAACAATCACCTCCTGTGTTTatgctttgtgtttattttggctATAATCATCTTTGCTTATTTTGCTCGGGTAACATCAACAAACAGTGAACCTCTGTCAGCggggcatgtgtgtgtgttccggAGCAGCTGGGAGGAGATGACCGAGTCTGTCCCTCCTGTGCTGCGTTCATCATCATGGGGCCTGATGTGCCCCTGCTCAACGATTACAAGCAGGATTTCTTTTGGAAGCGTTTCCCGCAAACTATCTTGGGGGGTCTGAGGCTCAAACTCGGCTACTGTGCCCCGCCATATGTTTATGTGCACCAGCTGGTGTTATTTCTGACACCATGGCTGTTGGGAGGCATCGGGACCCTCCTGTACCAGCTGAAGGTGCTGGAtgaaacctttgcaggtgttgTTTCTGGGGTGCTCATGCTGGGTATTGGTGCCACCCTTCAGGGACTGGCACGGTGTATGGCACACAGGACTGAAGTGGTGCAAAGGCTGCCTGCTGCCAATAACATTCTAGCAGATGAGGAGGAGGTGGAGTTTACTCACTGTGTGGCTCCTGAGACGGTACATTTTGTGGTGCCTGGGAAGAAGtttatgggtaatgtagttttgcACACTTTTCTTGCTGGAGGACTGTGTGGCTTGTCCACATGGTACCTGCTGCCGGACAGACTGAGCGGCCTGTATGGGCACGGGGGGGCAGGACTGGGAGCCGTCATGCCTTTGTTTGCCCTGAGCTGGGTGACTGTCTGTATTGGGGAGTATTCGCTCATCGTCAACACGGCTACAGAAACAGCCACATTTCAGCCGCAGGACACGTACGAGATCACGCCGCTCACCAGGCCGCTCTACATACTCGCCTTCATTACCGTGGACCTGGCTCTAAGGTTTTCAGGTTCTGATGTGGTAGAATTGCAAGTAGCCGCTCAGGTGcttcatgttttgtttgtggttCTCCCGGTGCTTTGGGCTTTGGGAATGCTCTCTCCACTGGACGCTCTTCTGCTCTGGGCAATGGAACAGACCTTAGTGCATGGCCTGGGTGGGTCAGCCATGTCCACCAATATCAGgCTCTTGGTGATGTTTctgtcatctgtgtgtgttgcCATCTGCACCTTCTTCATTCCCTCCTCACTGGGTGTGGTTCTGTTCACTGTTGCAATGGGTTACATCCTCAGCCAGGACCTGAGCCAGCTGCTGGTGCTGGTGAAGGCCAAATCTCCGACCTTCGGTCTGGGCTGGTGGGGGCTTCCTCTTTCACTGATGTTCATAATTGTAGCTTTGACCGAGGCTGGACTTCTTCATCAGCTTTACATCATCAACTCAGGGAATCTAACATTGGGTGTAAGTTCTATAGAACACTGGGAGTCGTCTGTTGTAACCCCAAACCCACAGGAGATGGTCGGCTGGATCCTTGTAGCTCTGTTTCTTCTGACTTGTCTGTTGAGGGAGCTCCAGGGGGCGTGTGTTCTGGGAGGTGCCATGCTCAACCCACTGTACCCCAAACGGGTCACGACTGCCCAGGCTTTCAGGCAGAAGACCCGAGGTCTGCGTGTTGCAGGGATCATCCGAAGGATCCTATTGAACCTCGTGAGTCCACTGGCGATGATTGCGTTTTTGTCTGTGGATGAATCTCTAGAGAAATTGCACACAGCCTCTCTCGCCATTGGCTTTACACGGGCATTCAGGATGGTGTGGCAGAGCTCTGAAGCTTCTTTGCTGCAGATGGTGTTGGTGATGATCATCAGACTTGCAGGGGGTCACAAAGTAACACGCTGGAATGAATTGGGCACTACAGTGCAGCTAATACTGGTCTCTCTAGTTGTGAATCGTGTGTCTCAGTTTGTATGTAAGCTGAGTTTTGCTCTTACGGTGTTGATCACATCCTGGACGGAGAGTAAACAACGTCGTCAGTCAGCAGGAACTCTGTTAGCGCTTAATGCTGCTCTGTTCCCAGTTCTGTTAGGTGTTGTGGCTCTTTCTGCCCTTCTGTCTGCCCCTCTACTTCCTCTCTTCACTCTACCTGTGTTCCTGGTGGGATTCCCCAGGCCGCTGCGCTCGTGGCCGGGCAACCCAGGCACCTCCTGCCCTTGCCCAGATTCTGTATATTACCAGCAGCTCTGCAAAAGACTAGCATCTTCTATCAGACCTGCACTTGCTAATGGTGCTTTTGGTTCTTGTACTCCAGGGTCTCATTACCTTGGCCGCTTCCAAGGTCGTCTTCTTTGGATCTCTGTTTTAGAAAGAGGCTACGGCTATTGCACTGTTAACATTAAGGGTTTGGAACTACAGGAGACATCATGCCACACAGTGGAAGCTCGGCGTGTGGATGAGGTTTTTGAAGGAGCGTTTGATCATGTAGAGCGGCCAGGCCAGTGTTTCCGGCTATTGAACCCTCACTGGGGTAACATTCTGACACCCTGCTCTGTGCTGCCAGTCAAGGTTTACTCTGACGCCCAGAACGTTCTAACTGGAATAATTGACTCCCCTGATCACCTGCGTCAGCTTAATTCTGACTTCCTTAAAACGCTGATCTGGATTTTATTGCGTTACTGTGTACAGGAATTGACACGTGGTGCTCAGCGAACAAAAGGTCATTCACTACAGACCTCTGGTCGCAAGTCGCAATGCTCTCAGCTTGCTGTGTCCTCAGAACCAGGTCCGGCTGTGGTTAAAATTGCCATGGACTCTCAAATTCGACCTGAGTCCTCCTCATCCTCTCATTTGAGGGGGCAGGACAGCTCCAGCCTCTCATCCTTTGCGGATTGGTCTGACGAGGATGATCTGTTTGGTCCAGTCCCTGTACGGCGGCCGATAAGAATGATGGTACGGACAGATGAAGGACAGACAGAGTTAGGGTTGGGAGTGTCTCTTCCAGGTTCTGTAGAAATTCACAGCCTGTACGAGAGCATGGCTCTGTCTTCTCTCCCCACCCTTAGACCTCTGGGTCTGGGTTTGGGGCTCGGCCTGCCCATTGTAGATAAAGGGAAAGATAACATCCCTTCACTCACTTCAACTGCTGTCTCAAGCAACTCCCAGCCTCTCCACTTCACAAGCCCTCACTCGGAGCTCTTCTCTCTGCCTGCAGAGTGGCGGACCGCCCAGTTGGCTTTCTCAAAGCTCCAGGTTCTGCGACCCTGCTTCCCAGAGGCTTGGTTCTGCTTTTGTTTATCCCAGCTGGTGGTGGAGAGTTTTGGGGAGGGAGACTTTGAGCAGGTGACGCTGGGTTTGCAGGAAGACCGTGCCCTGCGGGAGCTTTATACCCAGGTGGTGCTATCTTGCTGTTTGGCACTGGGGGCAGATGCTCAGGTGTTCAGCCCCAATCTGCTGTTCAGGCTGTACTGTGGGGACGGCCCCTGGACCGAGGGACTTGAGTGGCTCCGAGCCAATAAAGAGCTGTATCAGCTCACACTCAGGGCTTTCAGGTACAGTGTAAAACTCTTGGTAGACCAGGCATCTCTTGGTCCTGTAGAGAGTCTGGATGAGCTCTACACAACTTTGCAGGATTACCATGACAATTGGTTTATTGGCCTGGTAACAGACCGCAGTTGGCAAGACAGTGTTGCACAAGAGAAGCCCTTCTTATTTTCTCTCGGACACGATCTCACCATGGGGACATACACAAGCCGTGTGTTGTCCCTGCAGGAGAATCTAGTCCAGGTGGGAGTTTTGAATGAGGAGGGTGTGAGGGGCCAGTGGGCCAACCTGTCATGGGAGCTACTATATGCCACTAATGATGATGAGGAGCGCTACAGCATTCAGGCACATCCTGTGATGCTGAGGAACCTAACCGTTCAAGCAGCTGATCCACCTCTGGGATACCCCATCTATTCATCCCCACCCATCCATTTACGCTGCTTGTGATAATCACCTTCATTCAGAGATCATGACACACACGGATACTACCAGCACATAAATTTCAGAGTCAGacgtttttgcatttaatttctttttcattgagagtatggtaaaatattttattgaacgtatgaagcatttaaaaaaaaaaaaaaaaaaaaacatttcttgctACTGTTGTAGTGacgtttgactttttttttaaaaagatatgcatgaatatatgaatGTCAGCAGCTGGTAAATGTGCAAAACCCTTTCCACACAATAATGGTGTACAGCTTTCAGACACAATGCCCAGTTTAAATTTGTTCTCTGGAAAGTGTGCTCAACAATTCTCTCAACAATGAACCCTTGGGTGCTGCTaccatttcacattttaattttatttttgtatttttccacTTTCTTGTTAAGCATCCGTCAAGAGCCCTAAAAAGGAGAAACAGGAAAACAATTGCTCTTCTAAATAACCTATTTGTCAGATCTCAAGGATGTGCCTTGGTTACTATTTTCAGTggttatgaataatatttatttttgttcaagtGACCACCTGGTGTTATAAATATGACGGTAAATTGGCTTTATACGGTTGTTTAATTGTATGTACAGaagaaatacaaatgttttatatgaa

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137616 lncRNA upstream 36082 11543053 ~ 11558240 (+) True G92968
TU137594 lncRNA upstream 60392 11514477 ~ 11533930 (+) True G92958
TU137606 lncRNA upstream 65242 11525357 ~ 11529080 (+) True G92965
TU137599 lncRNA upstream 74979 11518620 ~ 11519343 (+) True G92962
TU137585 lncRNA upstream 84434 11509238 ~ 11509888 (+) True G92952
TU137632 lncRNA downstream 1019 11603697 ~ 11604159 (+) False G92977
TU137645 lncRNA downstream 25681 11628359 ~ 11628566 (+) True G92984
TU137667 lncRNA downstream 125145 11727823 ~ 11728484 (+) True G93001
TU137672 lncRNA downstream 149261 11751939 ~ 11758609 (+) True G93006
TU137801 lncRNA downstream 204350 11807028 ~ 11807246 (+) True G93113
XM_043254959.1 mRNA upstream 1722 11577662 ~ 11592600 (+) True lrrc9
XM_043254710.1 mRNA upstream 37106 11541122 ~ 11557216 (+) True tdrd9
XM_043254711.1 mRNA upstream 38297 11541122 ~ 11556025 (+) False tdrd9
XM_043255343.1 mRNA upstream 60927 11531855 ~ 11533395 (+) True mettl18
XM_043255618.1 mRNA upstream 86383 11486772 ~ 11507939 (+) True antxr1d
XM_043254806.1 mRNA downstream 4254 11606932 ~ 11621476 (+) False ppm1aa
XM_043254807.1 mRNA downstream 4254 11606932 ~ 11618496 (+) True ppm1aa
XM_043254808.1 mRNA downstream 4255 11606933 ~ 11614547 (+) False ppm1aa
XM_043255914.1 mRNA downstream 32977 11635655 ~ 11637883 (+) True six6a
XM_043254884.1 mRNA downstream 58909 11661587 ~ 11678612 (+) True mnat1
TU137640 other upstream 16463 11571660 ~ 11577859 (+) False lrrc9
TU137330 other upstream 376147 11215492 ~ 11218175 (+) True G92772
TU137332 other upstream 379235 11213526 ~ 11215087 (+) False G92772
TU137252 other upstream 625408 10964873 ~ 10968914 (+) True eif4ebp2
XR_006252423.1 other upstream 1174728 10418822 ~ 10419594 (+) False ly6pge
TU137630 other downstream 1019 11603697 ~ 11604852 (+) True G92977
TU137635 other downstream 1019 11603697 ~ 11604224 (+) False G92977
TU138047 other downstream 968953 12571631 ~ 12575212 (+) True G93296
XR_006252318.1 other downstream 984208 12586886 ~ 12588853 (+) False mgme1
XR_006252431.1 other downstream 1613980 13216658 ~ 13216757 (+) True LOC122357146

Expression Profile