RNA id: XM_043254807.1


Basic Information

Item Value
RNA id XM_043254807.1
length 4931
RNA type mRNA
GC content 0.43
exon number 6
gene id ppm1aa
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 11606932 ~ 11621476 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTAAGTGCGCAGCCCTGCTGAATCCACATCCGGGTCCTGCGCTGCTGCTGGTGTGCAGAGATTCGGTCCCGAACGCAGCGGACCAAAATAGCGGTCAAACCCGACACTTTCCACTTTACACGTTGAGGACGCAGAATAAATGGGAATTATGCATCCCTGGTTTAAACAGATAAGGGTGATCCGCTCTTTTACAGACTGAATGCGGAGCAAAACAATCCGCcagcctgtctctctctcaccacCGCCGCGCTCGGTTTAtatatctctctttcttttcgtCCTTCTCTTTTATCTGGTTTTTACCTTCTCCGCAGAAGAACTCTCCAGGACTTATTTTTAGTGGATTCCCAAGCAGTAGAGATGGGTGCTTTTCTGGATAAGCCAAAGATGGAGAAACACAACGCCCATGGTGAAGGCAACAGCCTGCGCTACGGCCTGAGCAGCATGCAGGGCTGGCGAGTAGAAATGGAGGATGCGCATACTGCTGTCATCGGCCTACCTAACGGCTTGGACCCCTGGTCGTTCTTCGCTGTCTACGACGGGCATGCGGGGTCACAGGTGGCACGCTACTGCTGCGAACACCTCCTGGAGCACATCACCAGCAACCCTGACTTCCAGGGTGGAGGCGGAGGAGGAGGTCCAGCTGTGGAGCCCAGCGTGGATAGTGTGAAATCTGGAATCCGTACTGGTTTCCTGCAGATCGACGATCACATGCGGCAGATCTCGGAGAAGAAGCACGGCGGTGCTGACCGCAGCGGCTCGACTGCCGTCGGTGTGATGATCTCACCCCGCCACATCTACTTTATCAACTGCGGAGACTCGCGGGGTTTGCTGAGCCGCGGAGGGGCTGTGCACTTCTTCACACAGGACCACAAACCCAGCAACCCCTTGGAGAAGGAGAGGATCCAGAACGCTGGAGGATCTGTGATGATCCAGCGCGTCAATGGGTCCCTGGCGGTCTCCAGGGCTCTGGGGGACTTTGACTATAAGTGTGTACATGGTAAGGGTCCCACGGAGCAGCTGGTGTCGCCGGAGCCTGAGGTGTATGCTATTGAGCGTTCGGAGCTGGAGGATGAGTTTATTGTTCTTGCGTGTGACGGGATTTGGGATGTGATGACCAACGAGGAGCTGTGCGATTTTGTTCGTTCACGACTGGAGGTGACTGATGATCTGGAGAGGGTCTGCAATGAAATTGTAGATACCTGTTTGTATAAGGGAAGTCGTGACAACATGAGTGTTGTGTTGGTGTGTTTCGTCAGTGCACCGAAGGTTTCCCCTGAAGCTGTCAAAAGGGAAGCGGAGCTTGATAAATACCTAGAGAGTCGAGTAGAAGAGATCCTGAAGAGGCAGGGGGATGAAGGTGTGCCCGATCTGGTACATGTGATGCGCACATTAGCATCAGAGAGCATCCCCAATCTACCACCTGGAGGAGAGCTGGCCAGCAAgCGGAGTGTAATTGAAGCAGTATACAACAAACTTAACCCATACAGGAACGAGGATACAGACTCTGCATCCACGGATGACATGTGGTAGCCCCGCCCCCTTTAAACACTGCACAGAGTTTACAACCCTCCAGAACCCTGCACAACAACATTTCCTACAGGACCCGACACCAGAACCCTGCACAAGAACCCTCAAATACTACAAAACCTGCACAAGAACCCTACCACAGCCCAGCACAGCTGCTCTGGACTGTTTGGAGGAAGAAGAGGCGGAAGAAGAGGAAGGGAATGAGGGCTCCCTCCCCTTGTTCACATAAAACGTTCCCTCTCAGTGCTAGGCAATGGTACCTTCTGGAAATTTTCTGCATACTCTTCTGTCCCGAATCACTCTTTTCCCCAAATCCTTTTATCCTTAAAGTCACcctctcaaaaaaaaattccaacactttttttttttttttttccccatttcatttgtttgtttttttttgttttgtttttttggtgtaattaatttgattcacatttccttgtgtgtttgtatatttcagcttttatttctgtgaagtgCAATTGTCTTGTACAAAGAAAAGCCTGTATCAAATGCAGCTTTAGttttacgtttaaaaaaaaaaagaaagaaaaaaggcacACCTTTATTGCCCtgcctgcttttgttttttctccaacTGCTGAAGCCCAACACATCTGCCTCTCATGTGCtttccttttcagttttttttctcttttttttttttttttttttttttttttttttttttttaaacaaaatatcactttttgTATTGTTACTTTTTAAGTGAAACGGGTAAATGATATGGGCTCACAGCACAGTACAGTAAGCTTTTTTGTAAATCTCACAGCACAGATGACAGTAATCATTATGTTCTCTCAGTactactgtttttgtttttctggtgGGGTGGGTCTTTtattttccccccttttttattttttaaatttttttgagaaaatcgCTTTAACTTAAACTAAGCTGAAATTGTGTGTGCGAGAAAATGAGTGAGTCTTATGAGAAATCAATGCTTtgtggtgtgcgtgtgtgcgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaggatgcATGTTTGATCCACCAAACTATTTCCATCGTGCATATTTTGTGTGATTCTGTTACCTGATGCGCTAACcctgattctctctctcttatcaTCAACACTAGGACTCTTCTCTACAGTGTTCTGCACTACTGCAGctcttgattattattattttttttttaattattttttttattttgtatttttggttaAGTTGGTCTAGGAGCATTTTAAAAGATCTCCTGCTCTTGCtggaaaaaagtaattgttAAGAAGCACTCAGAACTGGGACAGGCCCTATTAAGTgcgttcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttggttgtcAGTGCTTATGGTCTGAATGGATGTGTGAGATTGCATGTTTATTGTGCTTAAAACGATGTGGGTTTTAATGGGGATATTTAGGCTTTTGACACAAATATATAAGGCTTTAGCTATAGCGCTCGATCACCCATCTGCACTGCTGAGAGAGTGATGAGTGAATGCTTTCTGAGATTAACACTCAACTCGGATTTTTCTTCTACTTAAACCATTCGCTTCATCTTGTTGATTTATGTTAtccgtttcttttttttgttggatgTGGTGATTtctatctttctctgtctctcttttttttttttgtttttttcaaagaacAAATACAGTGTGATGCAGTGAGCTGGCCTGGTTTAGGCCAGAGCCTGCATGTGTTCCTCTGACCAATAGGGAGCGCAACAGAGTACTGTTTGCTGCTAAAGTGTGTGATTGAatcattcgttcattcattcgaATGCTCTTAGTTAATATTCTCCTGCACCCCCCCCAATGCTGTATGTAACATAGttctgaattaatttaattgttttttttttttcagagagatTGTCTCTTGTTCATTTGTCCTGATTGTCTAAAATGTGACACAGTAAAAATCACCCCCTTCGTCATTACCCTCCCGAACTAAATTTTATGTATGGAATAGATTATATGAACAAGAATTCCCTtgcatttaatgaatataaGTTAGCTTTTTAGTCTAATCCCGTGTATTTGCATACTGAAAAAAGGGTAGGTAAAAAGATTACTATAAGTCTTTTTCGCGAACCTCACAGGGTGatttattaaactaatattgTAACAAAATGACAATCTAACAGTGTTTAGCCGACGTAAACGGAAAAATCTCCCTGTATCCTCTACGCTTTTGCCTTGTGTTATAACACAGGCGTAAAGATCATGGTTTTCGTGCGTGGAATGGTGAGCTTTGTGTTCTCCCCAGTGGAAGCTGGGATGTTGTGTAATAGAAGATTTACGAAATGAATCTAAAATTAACAGGATGTTTTAGGATGGTCTTAGAGGCCATATGTTCACGTGTCTTTAAGCTTTTTTGGATCCGCAAAGCTACGTGGAATCACTTTAGGAATGTAGACACGAAGAACGACGACTCTTAATAGGATGCTGTTGGCTTGCTTAACCCTCAGTTTGGTCTTATACGGTCTTAAAAATCACTTGTAAGAAAATTAACAAATTTTCGGTTTTCGTTTTTTGTAAGGAGCGATTTGTTGTACATGCAGTTTTGAGTTCCGTGGACTGCTGTTATAAAGATTATCCtcctttttgtttgtaaaacttAAAGATGGTTTGTAGATGGGGCAAaaatccagattttttttttttgttgttgttgttgagagATGGTCATAAGCACAGGTCTTTTAATTGAGGAAAGGTTTTGGCTTACAGTGAAGCATACAAGCCCAGTTATAGACGATAGAGATgtttatgaatgtgtttttactAAGTCTTGTCGCTGAAGTTGACAAGGGCATTTTTCAAGGAATTCAAATGACACATGAACCGTCGCATTTGTTAATTGCGCGTAGATCTTTTGCTTAACCCACGTCTCAAACCCTTCGATGCCCCTGTATTTTAGGTTTATGCTCTGAAATCCTGTTTCTGTGGTCTCTAGTTCTGGTAGCGTTAGCTTGGTAGCTCTTTTCAGATTTATCCGGACCTGCCTTCTGATGTATAAACCAAGTGATTAATGCAGCCTTAATGCCTCCTGAAAACCCCCAACCCCAAACCCTTGGGCTTTACTCGTATATTACAGAGATCTGTATGCAAACACGCCAGTTTTGTGCTAAAGGGAACTAAATTTTCTAGCACGGTGTGTAATTCAGTGGTTCGGCCTCAGACGTTCTCATAGACACACATATGGTGTTTTACTCTGGTGAAATCCCACCTCCTACCCCAACAGGATTATTTTTGCTGATTTCAGTCATCTGCTGTCCTCATAAGCTAAGctatttttgttaaacaattgatatgtatatttgtattcatttataaatatgtacacaAAATGAAGTGAA

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0030145 manganese ion binding molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K04457 PPM1A, PP2CA; protein phosphatase 1A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137632 lncRNA upstream 2773 11603697 ~ 11604159 (+) False G92977
TU137616 lncRNA upstream 48692 11543053 ~ 11558240 (+) True G92968
TU137594 lncRNA upstream 73002 11514477 ~ 11533930 (+) True G92958
TU137645 lncRNA downstream 9863 11628359 ~ 11628566 (+) True G92984
TU137667 lncRNA downstream 109327 11727823 ~ 11728484 (+) True G93001
TU137672 lncRNA downstream 133443 11751939 ~ 11758609 (+) True G93006
TU137801 lncRNA downstream 188532 11807028 ~ 11807246 (+) True G93113
TU137844 lncRNA downstream 459141 12077637 ~ 12079902 (+) True G93153
XM_043254805.1 mRNA upstream 4254 11594165 ~ 11602678 (+) False pcnx4
XM_043254803.1 mRNA upstream 4254 11594322 ~ 11602678 (+) True pcnx4
XM_043254959.1 mRNA upstream 14332 11577662 ~ 11592600 (+) True lrrc9
XM_043254710.1 mRNA upstream 49716 11541122 ~ 11557216 (+) True tdrd9
XM_043255914.1 mRNA downstream 17159 11635655 ~ 11637883 (+) True six6a
XM_043254884.1 mRNA downstream 43091 11661587 ~ 11678612 (+) True mnat1
XM_043254883.1 mRNA downstream 43884 11662380 ~ 11678612 (+) False mnat1
XM_043254882.1 mRNA downstream 62855 11681351 ~ 11690241 (+) True slc38a6
XM_043256083.1 mRNA downstream 75427 11693923 ~ 11708708 (+) True prkcha
TU137630 other upstream 2080 11603697 ~ 11604852 (+) True G92977
TU137635 other upstream 2708 11603697 ~ 11604224 (+) False G92977
TU137640 other upstream 29073 11571660 ~ 11577859 (+) False lrrc9
TU137330 other upstream 388757 11215492 ~ 11218175 (+) True G92772
TU137332 other upstream 391845 11213526 ~ 11215087 (+) False G92772
TU138047 other downstream 953135 12571631 ~ 12575212 (+) True G93296
XR_006252318.1 other downstream 968390 12586886 ~ 12588853 (+) False mgme1
XR_006252431.1 other downstream 1598162 13216658 ~ 13216757 (+) True LOC122357146
TU138522 other downstream 2121111 13739607 ~ 13909603 (+) True G93613
XR_006252357.1 other downstream 2735620 14354116 ~ 14367135 (+) False frmd6

Expression Profile