RNA id: XM_043254813.1


Basic Information

Item Value
RNA id XM_043254813.1
length 1988
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC122356284
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 18037537 ~ 18043183 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATAAGTTATAAATATATCAGTTATAACCCGCGCCATCAAAGCCGAGGGTGGATGTCAAAAACTACTTTATGGAGGATTGAGTAGCACTTCGAAAGCTCTTATCGTACGACAGGTTCATGCACTTTGGCCGAGACCTCAGTTTGTCCTGCTTGGATAAAACTGTCCAGACACTCCTTTTTGCTCTTCCTGACCAGACTGACAATGTCCGATGATTCatactttcatttaaaaccacTGTCCGTATACTCGCACATGGTGAGGTCCAAGCAGCAGTACAATGCCAACAAACCGGTCTACAACATTCAAGTACACATTTCCAATAAAGAAGCCGTGGCACATAAAAGACGTCTACAAGACTCATGTTTTGATGAGACCTATGAGACCCCCCTTAAAAGACAGTGCGTCACAAGAACATTTTCCCCGGATCAGGGATATGTTTCCGTGGACTTTCTAAGCGGGGTCCATGAACTGACACCTCTGCAGCCGCTAATGATTTCAAAAGACTTCACGCCGCTTCGGTCAGAGGTCAATCAGATCGCGTCCCCTGTCGTGTCCACCCCTTTGTCCGATTGCAAGAAGAACTGGATGGTTCGGGAGAGCCTTCCTTCCCCGATACCGGTTCTAAAATGGGACAGAGAGGCTCCCGTGGCCGAAATATCGTTGCGCGCGTCTCCAGACTTCGATTATTTTTGCAGTCCCGTGTCTTTAGTCGGCTCTCGGTGGCCCGTGAAGGGTGAGGTCAAGGAGGTCTCGCGTGATCTTATCCCCATCATTGAATCGGAGTCCCACATCGCACCCCCAGAACCCGTTGTCTCTGTGAAAGAGGAAAAAGGAGTGTCTGTCAGTCAACAGGTGACTCTGGGAAATGAAGAAACCACCGCAGAGAGCTTTGAGAGCGCGCTGCCCCTTCAGGTGAAGTCCAAGGTTGTTCTTCCAGACAGCGCTAAGACCACCGGCAGACCTGCAGTGTTTTGTGAAGAGGAGTGGGTGAGGCGGAGGAAGATGTACGTCGAGTCCGTTAAGAGACATATGAAAGAGAAGGGAGCAGCAAACGGCGTCATCACCGAGCTCCATACTTTGATGAACGATGTGGCGAGTCATCAAACCGGAAGGACGGGGCCCCGCTGGCAACACCCCTCAGACCTCACGAAAAGGAATTATCTTCAGTCCCATCCGAGATGTCAGTTAGTGTCCCTCGACGAGTGGCAAAAAAGAAACCATCTTTCCCATCGGCGCTTTGCTAAAGTGGCAGATATTTTCTACAGGAGCCCAGtgctctgatttatttattatttttgttaatatttgttgTCGTTTCATATCTATTCTCTCTGTCATCAGCATAAAGGTGAGGATCATTGATTCGTGCTGCTGGTTAGCGGCTCTCTGAGAAGTCTAatctgatttgtgtgtgtgtgtgagatttcaCAGTGTGTATTTGTACTGCGCGTTTCATCCTAATGGTGTTGGGAGTTATGTAAAAAGAGATTTATATGtgaatagaaaatgtatatttgtattttggtGCTTGTAGAATAGAAAGATGTAAATAGATGCGTGgtttgatatttatttgtgaGCAATTTTGAATGATTGATATTCTCAGTAAAGTTTAGTCCTTTACTCGAATCAGCGTTTATTCACCTTTACAGCTGCtgtatagttttagttttgattGCCAGACAAATTTGTCCAATTTGCTATATATTAGATTTGCTAGTCATTTTTCGTTGTATATTGTTACAGTTTGCTTTGTTGAGGGCAAACGTTGCAGTGTTTCTTTAGCTATTTTGTATACCAATTACAGTTAAATTTTTagcaattaaatgcatataaagggacggattttatattttgtaaacagaaaaatattctaCATTGTTACTCTCAGGAGAAGCATGTATGTTGTGTCCTTTTGATTGGAGTTGTTCATTTGTTACATTTGCTTACTTAAAGCAGTTTTATAaactttatacatttaaattaaa

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140025 lncRNA upstream 147636 17889654 ~ 17889901 (+) True G94637
TU139885 lncRNA upstream 792568 17212947 ~ 17244969 (+) True G94543
TU139822 lncRNA upstream 1007462 17021864 ~ 17030075 (+) True G94501
TU139823 lncRNA upstream 1007937 17021864 ~ 17029600 (+) False G94501
TU139800 lncRNA upstream 1098883 16926914 ~ 16938654 (+) True G94484
TU140151 lncRNA downstream 118794 18161977 ~ 18162280 (+) True G94741
XR_006252355.1 lncRNA downstream 220125 18263308 ~ 18264596 (+) True LOC122356621
TU140164 lncRNA downstream 220341 18263524 ~ 18270603 (+) True G94750
TU140167 lncRNA downstream 330380 18373563 ~ 18375173 (+) True G94753
TU140208 lncRNA downstream 476457 18519640 ~ 18519911 (+) True G94785
XM_043255930.1 mRNA upstream 673 17996931 ~ 18036864 (+) True ldlrap1b
XM_043255929.1 mRNA upstream 673 17996931 ~ 18036864 (+) False ldlrap1b
XM_043255012.1 mRNA upstream 43399 17980379 ~ 17994138 (+) True maco1b
XM_043255011.1 mRNA upstream 43399 17980393 ~ 17994138 (+) False maco1b
XM_043255016.1 mRNA upstream 63873 17968063 ~ 17973664 (+) True tmem50a
XM_043256059.1 mRNA downstream 2714 18045897 ~ 18073101 (+) True LOC122356940
XM_043254717.1 mRNA downstream 40319 18083502 ~ 18113478 (+) True olig4
XM_043255689.1 mRNA downstream 76528 18119711 ~ 18126476 (+) True bsdc1
XM_043255690.1 mRNA downstream 76528 18119711 ~ 18126476 (+) False bsdc1
XM_043255691.1 mRNA downstream 76528 18119711 ~ 18126476 (+) False bsdc1
TU139910 other upstream 461599 17560296 ~ 17575938 (+) False G94564
TU139911 other upstream 475289 17560296 ~ 17562248 (+) True G94564
TU139637 other upstream 1432154 16597781 ~ 16605383 (+) True G94378
TU139570 other upstream 1518711 16515827 ~ 16518826 (+) True G94324
TU140175 other downstream 395990 18439173 ~ 18439583 (+) True G94760
TU140212 other downstream 493709 18536892 ~ 18537443 (+) True G94789
TU140195 other downstream 502169 18545352 ~ 18631718 (+) False G94776
TU140499 other downstream 1113113 19156296 ~ 19162325 (+) False lhcgr
XR_006252404.1 other downstream 1513966 19557149 ~ 19589504 (+) False foxn2a

Expression Profile