RNA id: XM_043254831.1


Basic Information

Item Value
RNA id XM_043254831.1
length 8471
RNA type mRNA
GC content 0.43
exon number 7
gene id fam83ha
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 16547186 ~ 16557976 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtgtgtgtgtgtgtgtgtgtgtgtgtgagatgtgtttTCCTCTGCTTCCACTGGAGTGAAAGTTCCAGCGTCTGTCGTTCGTCATGACAGTGTTGCACCGATGAAGGGGTTTTACAAAGGGAATTAAAGAAACACTGCACTTTAGATTCGGTGTAAATATGGCTCATCGTTCGCAGTGCTCCTCTGCCGGGGACAATCCCCTGGACCCCAACTACCTGCCCCCTCATTACCGTGAGGAATACCGATTGGCGATTGATGCCCTGGTTGTAGCTGACTTGGAGGGCTACTATGGGTTTCTTCAGGAAGCAGATGTGGTTGATTTCCTATCCCGTACAGAGATTGATTATATTAAAAGCATGGTGCAGGCTCCGCAGCACATCGCTCAACTAGAGAGGAGATACATGGCTGAAGATGTAGATGGCTCTTCTGACACTTACTGGCCTTTACATTCAGACCACGATGCGCCGAGTCTAGAGCTAGGTTGGCCACAGCATTACAGATTTGTTGGACCCACTGAGGTCACTACATTGGTGAACCCATCTGATCCTGAGATGCCCAGTATCAAGGAGCAAATCCGCAGAATGATCAAGAATGCACAACAAGTTATTGCTGTGGTTATGGATATGTTTACAGATGTTGACATCTTTGCTGATATCCTTGGTGCAGCGTCACGTGGCGTGGCTGTTTATGTTCTTCTTGATGAACTGAATGCTCATCATTTTGTCGCAATGGTGAACAACTGTAGGGTAAATCTTGATGAAATAAAATTCATGCGGGTGAGAACTGTGTCTGGTAGTACCTATTACTGCAGAACAGGAAAGACCTTCAAAGGTCAGATGATGGAGCGTTTTATTCTAGTAGACTGCAGAGCTGTTTTAAGTGGCAACTATAGCTTCATGTGGTCTTTTGAGAAGATACATCGTTGTCTTGCTCATCTATTTCTGGGACAGCTTGTAACAACCTTTGATGAAGAGTTTCGGATTCTTTTTGCCCATTCAGAGCCACTGgttgttgaaaatgttttggcaAATATGCCACACTATGGTGGTGAACCGGAAAGCTACTACAACACTGAAAAGACCCACATGTTTAACAGACAACATCCGACTATGGGGATGGAATGGGCTGGACGTACTACAGAAGATCATATGAAATTGGGTTACAAAATGTTACCTATTAGAAGTGAATCCATCCACAGTGCAACAGAAGCAAATCCCTCTGTTCAGAGGCACATGAACCTGCATGCTTCCCAGCAATATAGAGGGGACAATCAATTTATAGAGCATGGAAGGCACCAAATGAGAGCAACAAATGAAACGATTGGCTTTAAAAGACAAAGTTATGGAAATATACCTGATTACGAATACATGCCCGCTCAAAACCATTCAACTATGAGAGGAAACCAGTACATGGAGGGAGCAATGCCACAGGGTGGCCACTTTGCAAGAGAACCGCATATTTATCAGGGAGCTGGATTACAATCTGGTTATGACATGTATGGAAGGTTTAAAGGCCAAGGGCAACACATTGATCAGTTTTCAGGGCCTGTCTACCCTCATGAGGGGGATGAGGCTGAAGCACCTGGAGCTTATGACCATATTCAAAGATACCTGCAGTCTCAACCTGCTATGGAGGAAGGACATGGTCCAAGAAATCCACTACCGCCTGTGCAGTCCAATCTCAAGAGACATAGCATGGGACATTCTTATACATGTCAGACCTCCCCAACACAACCAAACCCGCCAGAACAGAAACGTTTCTTCAATGCAAACCGCAAACCACAGGATGTGAGTCAAAAGCAAGGCCTGCGGGACTGGAGGATCAGCTCATACCTTAGTGCATATGATGATGCAGGAGAGCTGGACTTATCTGAACTTGAAGTATCCACTGCATGTGATGACATTCCATGTTTTACGCAGGAAGCTCCTTGTGGCCCCGTATGTGCTGAAATTAGACCAGGAAATAGAGAGTTGAACAGGATACATCCTCAGAGGGAAAATCCCACATTTGTCCAAACTCAAAATGATTCTTTTGTGTCTGACAGTTTAGTTAATCCTCCATGTGATTTatcacaaataaatatcaaaacaacaacagcatcaaCTTCAGAGTCTTCTTGCACCACTGAGGGTGACAAAGCAGAGGAGCCGCAGAATAGAGAACCTAAAGAGACTAACCGGATAAGTGAAGAGTTCCTCAAAAGGAAACCTAGTCGACCTGTCCAGAGGAGTTCCAGATTGAGACACTCGCTGATATTCAATTCAAATCTGGAGTTGCATACATCAGAAGAGATGAAAGATACTGCTGGAGAAAAAGATGGGGATGAATCTTCAAAGCTTTCAGCTCGTGTGTCACAAATCTTCGATAAAAGGAGGACTGGTTCTCCATTTCAACCGTTTCAGTGGAGAAGTTTGGCAAAGTCAGCCACATTTGATAACTCCACCTCAGAGTCTGCACAACCTGAGGATGAACTGAACAAAACTGGTGAAAATTCAGATGTAGATAAGGTTGAAAACTGCCAAAATCTTCGAAGGAATTCATTAAAGGGTGATCTGCAAGAAAAAGATCAGCCTCAAACAGCTCCTGAAAAAAATAGCCAAAAGGATGAATGTCCATCTAATTTATTGCAAAAGCCAACCTCTTTCATAGATATGAATGACCCTGACTGTAGACTGAGGTATTTCAAAGAGTTAGCAGCCAAACGAAAACTTGCAGCAGCAAAAGGTTCTCAGAGCAATCCAATGAAAGCCACCCAAAAGTTTGCTCTACCAGAGAAACCTTTGGCTAATGATACAGATGAAAAAACAGGGCCTGTGTTCAAGACCTCAGAATCTTCACTGAAGTCAAAAAATACCCCTTCCACAGTAACAGAAATCAAAGAAACATATAAAGATACCACATGTGAGGAATCAAGTGAAGACATCCCTCATAGAGCCACCGATGCtgaaaaaataagatttaagaAAAAACTTGCAGAAGAGTCTGGCtcagctttaaaacattttaaaggagagaTTGCTCAAGCTCAAAAACCTGTTGAAGAGGCAAGAACAATATCTACAACTAAAAACCAGACACCTCCCATTCTGAAATTATTTTCACAAAAGTCTCTCTGTGCCTTACAAAATCAAGCAGATTCTGATGTTTTAGATACAACCTTAACCAAATCTAGCCTCAAACAATATCATATTCCTAAAGAAACTGATTCATCCCATGCCATTGTAACTCAGGGTTGTCCTCCTGTTAAGTTACCACAGGCAAAGTGTGTGTCACCACTATGTACTACTCCAAATGAGGGAAATCTATCTGCAAAAGACTCCCAAATTCTTCCACAGAGCTTAATCAATATTTCTAGCACTTGTTCTGATACTGAGCCTCTTTGTTCTAATTCAACAGCAAACTTGGAAATTGTAGATACTTGTGTACCTTCAAAAAGTGACCGCAAAAATAAAGTTCCCTCTCCTACATTTCCTACAGCTGGAATTAGTTCTATCAAACACCCCGCTGCAAAAAATCTTGACTTATCTCAGCACCTCAATGAAACTGGGGAAGATATTTCTAGACACTTCACTGCAGGGGCTGAACTGTCTACAgcagaaaatgtgcatttccAACACTACTCTGCAAAAGAGACAAACTCTTCTCGACAGCATAATTTAATGGAAGCTAACTCTTCCATACCACCCACTACCACAGAAAGCGAACAAAATTCTACTACAACAGAGTCAGACCATTCTCAATACACTAATGCCTCTAAAACAGACTGTTTTCAACAGCCTACTGCAGTGAGAAAAGATTTTTCCCTGCACCCCACTGCTAGAGAATGTGGAACTTCACCAAACTTCCCTATTACAACAGAAGCGGATTCTTTCCAACAGCCAACTGCAGCAGAAGTCATCATCAGTGAATCATCATATCTCTCCACTACAATAAACTCTTCTCAACCACCAACTGAGCCAGGAGAAGGCTCTTCTCAGCCCGGTACTAAAACTGGGACAGACTTTTGCCAACAATCTAGTGGAGCAGAAAGCGAAGACTCTGAAAAACCCACTTCAGTTCAGACAGACCCTACTacagcaagaaataattcaTCCCAACAGTACACTGCAGTATCCTCAGACTTTTCAAAACATCCCCCTGTAGTTGGGGCAGACACTTCAGAACACCTCACTGCAGCAGAGGTAGACTCTTCTCAGCTGTCGGCTGCATTTGTAAAAGACTCTATGCAATACCAtgtggaaaacaaaagtaaacattCCCTAAAACCCTCTACATTGGGTACACAAACCTTCATTCAGCCAAATGTTTCTGCTGCAGCCTCTTCACAACATTCTAGTGCAACAACCACCGATTTTTCTCAGCAACCAGTTGTAAAAGATATAGAATCTTTCCAGGAGCCTGCTGCAACAGAGACAGGGAAACCAGAAGCAGACACAGACTCCACCCAAAAGTCAACTTCAACAGCCACAAACTCTTCAGACACAGACACTTCCCAGCAGCCCACTGCAACAGATTCTTCCCAGCAGCCCACTGCAACAGTCACAGACTCTTCAGACACAGACCCTTCCCAGTGCCCCACTGCTGCAGTCACAGACTCTTCAGACACAGACTCTTCCCAGCAGCCCATTGTAACAATCACAGATTCTTCAGACACAGACTCTTCCCAGCAGTACATTGCAACAGTCACAGACTCTTTAGACACAGACTCTTCCCAGGTACAGCTTTCCAGCTTCCCCTCTACAGCAGAGATAGTCTCTTCCAGAGAGCCAAATGCAACAGACACAGACTCTGCCCAGCAGTCTGGTGCAACAAAGACAGACGCTTCCCAAAAACGCACTGTAACAGTCACAGACTCTTCAGACACAGACTCTTCCCAGCAGCCCACTGTAACAGACTCTTCCCAGCAGCCTACTCCAGTAGTCACAGACACTTCTCAGCAACCCACTGCAACAGTCAAAGACTCTTCAGAAACAGACTCTTCCCAGCAGCCGTCTACAGCAGAGATAGTCTCTTCCAGAGAGCCAAGTTCAGCAGACACAGATTCTTTCCAGCAGTTTGCTGCAACAGAAACAAACGCTTACCAAGAGCCCACTGTAAAAGAAACAGATTCTTCTGGGCAGCCCACTGTAACAGTCACATACTCTTCAGACACTTTCCAAAAGCCCACTGCAACAGTCACAGACTCTTCAGACAAAAAATCTTCCCAGCAGCCCACTTCAACAGACTCTTCCCAGCAGCCTACTCCAGTAGACACAGACTCTTCCCAGCAGTACACTGCAACAGTCACAGACTCTTTAGACACAGACTCTTCCCAGGTACAGCTTTCCAGCTTCCCCTCTACAGCAGAGATAGTCTCTTCCAGAGAGCCAAATGCAACAGTCACAGACTCTGCCCAGCAGTCTGGTGCAACAGAGACAGACGCTTCCCAAAAACGCACTGTAACAGTCACAGACTCTTCAGACACAGACTCTTCCCAGCAGCCCACTGTAACAGACTCTTCCCAGCAGCCTACTCCAGTAGTCACAGACACTTCTCAGCAACCCACTGCAACAGTCAAAGACTCTTCAGAAACAGACTCTTCCCAGCAGCCATCTACAGCAGAGATAGTCTCTTCCAGACAGTCAAATGCAGCAGACACAGATTCTTTCCAGCAGTTTGCTGCAACAGAGACAGATGCTTCCCAAGAGCCAACTGTAAAAGAAACAGACTCTTCCGAGCTGCCCACTGCAACAGTCAAAGACTCTTCAGACACAGACTCTTCCCAGCAGCCCTCTACAGTAGAGATATTTTCTTCCAGAGAGCCAAGTGCAGCAGACACAGACTCTTCCCTGCAGCCTGCTGCAACAGAGACAGACACTTCCCAAGATCCCACTGTAAAAGACACAGACTCTTTCAAGCAGCCCACTCCAACAGAGGTAGACTCTTCCCAACAGCCCACTGGAGCCATCATAGACACTTCCCAAAAGTCCACTTCAGCAGACACAAACTCTTTCAAGCAGCCCACTGCAACAGAGAGAGATGCCTCCAAGCAGATTGCTGTAAAAGAGACAGACTCTTCCCAGACACACACTGTAACAGCCACAGATTCTTTCCGGCAGTCCATTCCAACAGAGACTGATGTGTTCCAGCAGCTCACTATAACAGAAAGTGAATTTTCCCAAAGTCCCACCAAAATTGAGACAGACACTTACAAACATCCAATTAAAACAGAAAGTGAATCCCATCAAGACATCACAGCAACAAAGTCTGCCTGTGTGAATGAGAAAAAAGATGATATCAAACTAATAACCATACCAGAGAGCATTACTCAAAAAGACAATGGTATATCTCAAAATGCAGTCATCACAGACTTACGTTCCCTAGCTGAACATTCCCAATCTGAAACTGCAACACTTTGTCATAGCCAAGTAGAACTAAACCAAACACAAGCATGGGCCAAACCATGTATAACTCATAATGTAAAAGACACAGATGATGGTGATTTACCTAGTCTTGATTCAGTGGAGGTGAGCTCAACTCAGCCTCAGCTTTCACCAGAATCTTGCCGGTCCTTGGATGTAATCAGCTCAACTCAGGGAATAACACAATCACCAAATCCTATGGAATTTAGTTGTCCAAAGGACTCAAATCCTGAGAAAGCAGATGGGTGCATGACATCTGACACAATTACAGAGCAAACTCAGAGTCATGACACTCCAACTATGGATGCAGGGCCTCAGATAGAAGTTTCTACAGCTGTAGAGTCTAACGGGATtgataaaattaaacaaaaacaccagaGGTAAGAGACTGTGACTAACGCTGCAGAGGTGtcagaaaaatcacatttgacTGTTCACGTTAATTCAGAAAATCAGTCTTCTCTTGCAGAGAATGCAAAATCGATTGTGTCTGCCCATCAGACATCTACTGCAAATGTTATCTCTTGCAGCAATCTTAGAGATGACACTAAAGTTCTTTTAGAGCAAATTTCAGCAAAGAATCAAAGCAGATCTTCCTTGTCCAAGCAGACTCCTGCTGCACCCAGTGAAGTCAAAAAGGTTGAGGTTAGCTCTGCAGATAAATTGTCCTCAAATTATTCAGGAAGGCCTTGGTCCTCTAAGACTACACCAGAAGAGCGGGAGAATTTACTAAAAAAGATGGAGCAAATGCGTAAAGAGAGGAAGGTCTACAGCCGTTTTGAAGCCTCATAAATTAAACCATTGGAAGAGGTGCTTCATTGATGAACAATAAGAGGGAAGAGATTTTGCCagatttttcctcttttttctctcttaccTCATAACTGTGAACCTGCACAAACTTGGATTGAAGTGTCTTACAACTTTTGACTATACCAAAGAGTGCTGCCTATAGTCAGACAGTGGAAATCCCTGCAGGGCGTAACAAGCTATGCAGATGATCTGCATGCCAAAAACAGGAAATTTACCAGGTGGAATAAGCTTTTGATTGGGCAGGTAGTTCTTAGTGTGTATATAGCCTATATAGTATAACTGTGAAACACATTTCCAAATTTTGCAGTTATTGGGAGTTCTATATCTAGAAATTATGATCtgttataaatactgtaaatagaGAGTTGTTTACCTAACAAAAACAAGGAGTTAATTAAAAAGAGACTTGAGCATGTGAGCGATGAGAAGTGGGGGAGGAGTTGCTTGATATTGCCAGGAGCAAGGAGCAGGTTTTCTGAAAGTCTCCAACATCATTCTTATACTGCCTCAACATGTTAACAGAGTCAGACTATTGTTCATGCTTCAATATGTCATAAAACTTTTctgcaagtatttttttttcatttaatataggTATTTTGTGCCCAGATGTTTTTCACTGAAAGAACTTCATAGTGGATCAGTAGCTGAGCACACATTTTTCTATGTAGTAAACTTGAAGCAGcaggaaacagaaaacatgGAACAAATTGGAGCTGGCGCAAAATGTTCACAGGATGCTTTGAAGAGGGAAAGGGGAAATTGTTCAGTCATGTGGCCCGGCAAGAGAATAGAAAAGGACATTCCAATAGATGActaatttaattgtttacttGTCCATCGGTTGATTGTGTAAACAAAAGATACGTTACTGTAAAATACATTCTGTTGGCCTGATACACAATGTTGATGCACAATGGAAACTCCTAAAATACATGTTCATTACATAacatattaatgaatataacaTGTAGCACCTTTTACTCAAAGGAGTTTCTCAATATACCAAATCGAtacaaaaatgtgcaatattatGAATTCAGAATGAgatactgatttatttaaattgtgaaatttgTTTGTCAACTATTGTCAGGTTCCCATATGTTACATGTGTAGAGAACCAATAATGTCTGTTACATGTTCCCACCTGTTCCAAAAGTTGTATGTTTGAATCATGTTTATAAAGCAAAATGAGTAATACTACactgatatgaaaataaaactacaacataagacatgttctttaaatattaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139711 lncRNA downstream 28360 16515857 ~ 16518826 (-) True G94425
TU139701 lncRNA downstream 114756 16430674 ~ 16432430 (-) True G94416
TU139699 lncRNA downstream 116893 16429841 ~ 16430293 (-) True G94414
TU139696 lncRNA downstream 123393 16422666 ~ 16423793 (-) True G94411
TU139539 lncRNA downstream 170263 16376573 ~ 16376923 (-) True G94308
TU139759 lncRNA upstream 9939 16567915 ~ 16569250 (-) True G94453
TU139762 lncRNA upstream 35449 16593425 ~ 16594731 (-) True G94455
TU139834 lncRNA upstream 426530 16984506 ~ 17015657 (-) True G94511
TU139837 lncRNA upstream 426530 16984506 ~ 16992084 (-) False G94511
TU139854 lncRNA upstream 464127 17022103 ~ 17030063 (-) True G94516
XM_043254797.1 mRNA downstream 694 16543081 ~ 16546492 (-) True LOC122356270
XM_043255510.1 mRNA downstream 8705 16519536 ~ 16538481 (-) True btaf1
XM_043255680.1 mRNA downstream 59511 16469935 ~ 16487675 (-) True march5
XM_043255806.1 mRNA downstream 101447 16432695 ~ 16445739 (-) False LOC122356747
XM_043255805.1 mRNA downstream 101450 16432695 ~ 16445736 (-) True LOC122356747
XM_043256166.1 mRNA upstream 13572 16571548 ~ 16592072 (-) False lrrfip2
XM_043256176.1 mRNA upstream 13572 16571548 ~ 16592072 (-) False lrrfip2
XM_043256167.1 mRNA upstream 13572 16571548 ~ 16592072 (-) False lrrfip2
XM_043256169.1 mRNA upstream 13572 16571548 ~ 16592072 (-) False lrrfip2
XM_043256168.1 mRNA upstream 13572 16571548 ~ 16592072 (-) False lrrfip2
unassigned_transcript_1928 other downstream 99424 16447691 ~ 16447762 (-) True trnah-gug_23
TU139697 other downstream 120651 16425697 ~ 16426535 (-) True G94412
TU139489 other downstream 254820 16290154 ~ 16292366 (-) False cisd1
XR_006252286.1 other downstream 384433 16014317 ~ 16162753 (-) False pcdh15a
unassigned_transcript_1929 other upstream 1161131 17719107 ~ 17719179 (-) True trnav-cac_10
unassigned_transcript_1930 other upstream 1161658 17719634 ~ 17719706 (-) True trnav-aac_26
TU140311 other upstream 1987605 18545581 ~ 18672893 (-) True LOC122356088
TU140313 other upstream 1987605 18545581 ~ 18672893 (-) False LOC122356088
TU140314 other upstream 1987605 18545581 ~ 18672893 (-) False LOC122356088

Expression Profile