RNA id: XM_043254849.1


Basic Information

Item Value
RNA id XM_043254849.1
length 2723
RNA type mRNA
GC content 0.49
exon number 13
gene id abcg8
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 6444614 ~ 6451508 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCGGGTGCTTCTCTAACCCGAGAGGCCAGACCAGAGGGGCACAGACCCCTTTCTACCACATCCACCATGTCAGACCAGAGCGCTTCCCCTCCAGAAGACAGCTCCGGCTCTACAAACGACAAACAGAACAGGACACAGGttcaagacatttttttctcatctcCAGAGGAGGACAGCAGCTTGTATTTTACGTACAGCGGAGGTCGCAATGAAGTGGAAGTCCGCAATCTCAATTATGaggtGGATATAGCTGCACAGATACCCTGGTATGAGAGGCTGTCGGAGTTCAAGATGCCCTGGGAGATGCACAGCAACAAGCAGACCGTCATACAGGACCTAAACCTCCGCGTGCACAGCGGCCAGATGCTCGCCGTCATCGGCAGCTCAGGCTGCGGGAAGACCTCCTTACTGGACATCATAACGTGTCGAGATGAGGGCGGCACGACGAAGTCGGGAGAGATTCTGATCAACGGGAAACCCTCGACACGTTCCCTGGTGAAGAAATGCATTGCGCACGTGCGGCAGGACGACCGTCTCTTGCCGCATCTCACGGTGCGAGAGACGCTGGCGTTTGTGGCCAAGCTGCGGCTGCCTGCGCACTTCACCCAGCAGCAGAGAGATCAACGGGTGGACGACGTCATCGCGGAGCTGCGCCTGAGGCAGTGCGCGCACACGCGCGTCGGGAACGAGTACGTGAGGGGCGTGTCCGGcggagagaggaggagggtCAGCATCGCCGTGCAGCTGCTCTGGAATCCAGGTATTCTCATCCTAGATGAGCCTACTTCGGGTCTGGACAGTTTCACAGCCCATAATTTGGTCATTACATTGTACCGTCTGGCTCGAGGGAACCGGCTGGTGTTGCTGTCAGTCCATCAGCCTCGTTCAGATATCTTTCAGCTCTTTGACCTGGTGGTGCTCCTGTCTTCTGGCACAGCTGTGTACTGCGGTCATGCCCAGCACATGGTACCTTACTTTACTTCTCTCGGATACCCATGTCCGCGATACTGCAACCCGTCTGACTACTACGTGGACTTGATAAGCATCGATCGGCGCAGTCCTGAAAAGGAAGCGCAGTGTTTGGAGAAAGCCAGGGTGCTAGCGGCCCAGTTTGTAGAAAAGGTGAAGAACACAGAGGATTTCATGTGGAAATCAGAAGATGGGGGTTTCCCGGCGCTGGATGCCCCGCAAAGTGTTCCTCCCGTCCCGAACAAGGAATCAGCGATCACAGTTTGCAAAAAGAAGGATCGCCTGCCTGGAAAACTGCAACAGTTCACCATCCTAATCAAacggCAGGTATTTAATGACTTCCGAGATCTGGTGACGTTGGTGGTTCATGGTCTGGAAGCCTTGTTGATGTCACTGCTCATCGGTTTCCTTTATTTCGGAGCTGGAGACGAGGGTCTTTCTGTCCAAGATACCGTGGCCTTGCTCTACATGATAGGAGCTCTCACACCCTTTGCTGTGGTGCTGGACGTCATCGCAAAGTGTCATTCAGAGAGAGCCATGCTTTATCATGAACTGGAAGACGGCATGTACTCAGTCACCTCGTACTTTTTCGCCAAGGTCCTCGGGGAGCTGCCGGAGCACTGCGCCTTTACGCTGGTATACGGCGTGCCCATCTACTGGTTGGCTGGACTCAACAGCGCTCCCGACCGCTTCCTGCTCAACTTCCTGTTGGTGTGGCTGATGGTGTATTGTAGTCGCTGCATGGCTCTGTTTGTGGCGGCCGCCCTGCCAACGTTACAGACTTCCTCTTTCATGGGCAACGCGCTCTTCACCGTCTTCTACCTGACGGCCGGCTTTGTCATTAGTCTGGAAAACATGTGGCTGGTGGCGTCTTGGTTTTCTTACGTATCGTTCATGCGCTGGGGTTTTGAGGGAACGCTGCAGGTTCAGTTTCGTGGGACTAGGATCCCGATCACTATCGGGAACCTCACCGTAGATTTCGATGGCATTAAGGTTGTGGAGCTGATGAAAATGAACCAGTATCCACTGTATTCCTGCTACCTGGTGCTTATTGCGGTTGCTTTTGTGTTCATCGTGCTCTATTTTCTGTCACTCAAATTCATTAAGCAGAAGTCCAGTCAGGACTGGTGAAGAGGACAAATCAGCGTGAGGTCAAGGCCACACCGCAGCTTGTTTTCGCAAAGAAACCCACATCTAAAAAATGCCCATCCACAGCACAGACCTTGCAAACCGAGATCTTTTAGACCTTTTTAGACAAGTCTCTCTCCACAACAAAAatatgatgatatatatatatatatatatatatatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtatgtatgtatgtgtatgtatgtgtgtgtgtgtgtgtgtgtgtgtgcattttactACCACTAACTGCCGCTGGATGGCAGTAATGTACTAcgtttgcacactttttttaagttaaaataattactttttttttctggtaaacCATAAGAAGTCATGTTTGGTAGATAGCTTTAAACAAATTTACTACAGCATGTAGatttcttttatgtatttactattattttcttttgtaattcAGAATCGCTTTGTatgtataacattattatggaaCGGTGTACTTCTGCAGGAGCTTTGAAAGCTTTGTTAGAGATTTAGAAATctacaaatataaatgcttgtgttttgttgttgttgttttaatgaaaaaagacaCTGCATTCAGATCAACAAGCTATGCATTCGTTCCA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K05684 ABCG8; ATP-binding cassette, subfamily G (WHITE), member 8 (sterolin 2)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135268 lncRNA upstream 74086 6370210 ~ 6370528 (+) True G91324
TU135252 lncRNA upstream 86598 6254603 ~ 6358016 (+) False akt3a
TU135248 lncRNA upstream 153171 6279559 ~ 6291443 (+) False akt3a
TU135249 lncRNA upstream 182699 6254603 ~ 6261915 (+) True akt3a
TU135152 lncRNA upstream 442552 5998442 ~ 6002062 (+) True G91250
TU135295 lncRNA downstream 1236 6452744 ~ 6453076 (+) True G91343
TU135514 lncRNA downstream 242154 6693662 ~ 6699169 (+) True G91492
XR_006252288.1 lncRNA downstream 271772 6723280 ~ 6755554 (+) True LOC122356144
TU135555 lncRNA downstream 363502 6815010 ~ 6861516 (+) True G91529
TU135574 lncRNA downstream 491059 6942567 ~ 6942795 (+) True G91545
XM_043255429.1 mRNA upstream 15227 6396742 ~ 6429387 (+) True cep170aa
XM_043255430.1 mRNA upstream 15227 6396742 ~ 6429387 (+) False cep170aa
XM_043255431.1 mRNA upstream 15227 6396742 ~ 6429387 (+) False cep170aa
XM_043255432.1 mRNA upstream 15227 6396742 ~ 6429387 (+) False cep170aa
XM_043255433.1 mRNA upstream 15227 6396742 ~ 6429387 (+) False cep170aa
XM_043255874.1 mRNA downstream 65375 6516883 ~ 6543229 (+) True ppm1ba
XM_043256147.1 mRNA downstream 93999 6545507 ~ 6553326 (+) True slc3a1
XM_043256255.1 mRNA downstream 109724 6561232 ~ 6654233 (+) True camkmt
XM_043256328.1 mRNA downstream 252579 6704087 ~ 6707392 (+) True six3a
XM_043255743.1 mRNA downstream 389089 6840597 ~ 6843540 (+) True LOC122356727
TU134595 other upstream 1446718 4992327 ~ 4997896 (+) False si:ch73-49p17.1
TU134239 other upstream 2200573 4182499 ~ 4244041 (+) False G90660
TU134245 other upstream 2200573 4182499 ~ 4244041 (+) False G90660
TU134242 other upstream 2200573 4241132 ~ 4244041 (+) True G90660
unassigned_transcript_1924 other upstream 2372715 4071806 ~ 4071899 (+) True trnai-uau_4
unassigned_transcript_1926 other downstream 679918 7131426 ~ 7131496 (+) True trnag-gcc_68
TU135767 other downstream 1384682 7836190 ~ 7838941 (+) False chchd1
XR_006252298.1 other downstream 1407190 7858698 ~ 7881483 (+) False zswim8
TU135961 other downstream 1854978 8306486 ~ 8310824 (+) True G91833
XR_006252358.1 other downstream 2214760 8666268 ~ 8683052 (+) False pcnx2

Expression Profile