RNA id: XM_043254853.1


Basic Information

Item Value
RNA id XM_043254853.1
length 2226
RNA type mRNA
GC content 0.41
exon number 10
gene id rnaset2
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 23513815 ~ 23519654 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACAAGGTAAACACGATCAATGCACAGAAGCCGCAGCAgcgtctctttcaggaaaggaaGTGGCTCTGAAAGCATTCTGAAGTGACTCTCGACCACACAGTGTTTCGGAAAGATAATAACTGGGCAGTCCCAAGACTTTCAACCAGAGTAAATAAAAACCGTTTCACACCAGCGCTCTCTTATATCCGCAGGACGTAAAAACTGTATGTGAATTAAACAGGCGTTCCAGACAATAACAGttttctgAACGTTAATGATAAATTCTCGTCTGTCCTCGGTAAGATGAGCGGACTCGCACCATCTGGAGGAATGAGATTCATCGCAGTTGCTGTCATACTTTGTGCTGGATTTTTCTGGCCAACAGCCTCTGGCCATCCTCGGCACGAATGGACAAAACTGATCCTGACCCAGCACTGGCCACAGACGTTTTGCAGTatGGAAAACTGCACAACAAATATAAGCTTTTGGACTCTGCATGGATTATGgCCCAACACTGGCATGAGGTGCAACACATCTTGGCATTTTAATGCCAGTCTGATTGAGGACTTAATACCAGAGATGAAGAAATACTGGCCAGATCTACTGGTGCCTTCTTCCCCCGAATTTtgGAAATATGAATGGACAAAACACGGAACCTGTGCTGCGAAAGCAGAGTCTCTGAACAGTCAACATAAATACTTCAGCAAGGCTCTTGAGCTGTACCACAAGTATGACCTTAATAGtgttttaaagaaaaactataTTGTGCCTTCTGAGCAGCACTACACActggatcaggtggaGACCGCCATTACTAGCGTGTACAACGTGAAGACAAAGATTCAGTGCGTCCATCCGGGAAAGGGAGGCCAGGTTCAGATTTTGGGTCAAATAGAGATCTGCGTCGACAGGGATTTCCAGCTGATCGATTGCGAAAAGTCAACCGAAGAAATCTGGAGCGATGACATCCCCGCAGTGGCTGTCAGTGGCCAGTCAGAGCTCAGCGTGTGTGATCAGTCTGTGCCGGTCTATTACCCCCCAGTGCCCGGCAGATCATAGAGGTGGGCAACCCCAGACCTCGTGTGCGAGCGTGGAATCACTGAGCATAACAAGACGAGAAGTCATTCTGTCTAGCTTTTGAAATCCTGGAAACAGAGGAAAGTCTTTCCTGTTTAcactgtctttttaaataattgcacaataaatgttttaaataattctgctGGAAAGATATAGTGACGATTTAAGGGTGTATGGACTGCTGTATTCTATGGATACtgggtcattttttttattggtcttgTTGGTTTTACAGTGTATCTTACTGAGCCATACTTTTTTGGAGGGgtgaattttattaaaaacgtgTCCTGattacattttccacaaaaatttcgaagaaaaatttaaataaagcgtGTTACACATTAGGAAAGGTTTTTATCGTTATAACAATTTTCATGAAAGTTAAACACAGATCCCACCTGACAACAGTGCCTATGGACATTTTACTTTTCTCCAATTTACATTATTCAAAACTACTCTCATTTAGTAGTACAGTAAAACCATAGAACTATGTATAAATGTTTGACGGTATAGCagttagaaataattttttagcaATGTGTTCAATTTCCACTAAAATCACATTCAGTGATCCTTAAAGCAAACCAAGTCTTATCTATTTATGTTTAGTCTGTGATGTTCTGCCTTTGTGTGTTTCATCTGATAAATTTGTTATTATGATTGGGATTGAAAGAGGCCATTCATGTCTTAATTTGCAGTGTTAATGTGAAAAATCCGTGCTAGGTTTTGAGCTTTGGGCCTAATGGCTGCTGTCCCACGATGCACATTTAAGCTTCTGCCGCTGGAGGGCAGCACATGCgctctgccaaaaaaaaaacaaaaaatcacaTTGCTGTTGTTTACAGATATGTTTTTCACGTGTACGCTTTATGAAAGCATGATGGTTTTGAAGTTAGCATTTCCACAAAATGTTCTGGTTAATAAACAGTGTGTTTGGGgccttttcttttcaaatacaATTATTAGGAGGCGGCCATATCAGATGTGGGCATTTGATACGCAACTCCTCTTGTGAAATACATGCCTTAATGTTCGATTTCACACTGAGGAGAAATTTATACTGCTAGTCAAATACtttgtttttgataaatgtCATACACCATtcacttaaaatgtgtttgtaatgCAGTGGcaactgaataaatgtaaacataaattcCTA

Function

GO:

id name namespace
GO:0016075 rRNA catabolic process biological_process
GO:0005788 endoplasmic reticulum lumen cellular_component
GO:0005576 extracellular region cellular_component
GO:0043202 lysosomal lumen cellular_component
GO:0033897 ribonuclease T2 activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K01166 RNASET2; ribonuclease T2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142211 lncRNA downstream 70032 23439277 ~ 23443783 (-) False si:ch211-130h14.4
TU142128 lncRNA downstream 335719 23176802 ~ 23178096 (-) True G96117
TU142099 lncRNA downstream 359320 23152205 ~ 23154495 (-) True G96108
TU142100 lncRNA downstream 359320 23152205 ~ 23154495 (-) False G96108
TU142019 lncRNA downstream 483915 23017198 ~ 23029900 (-) True G96061
TU142295 lncRNA upstream 19125 23538778 ~ 23542300 (-) True G96254
TU142315 lncRNA upstream 407678 23927331 ~ 23928060 (-) True G96265
TU142336 lncRNA upstream 522875 24042528 ~ 24067735 (-) True G96279
TU142347 lncRNA upstream 550507 24070160 ~ 24070488 (-) True G96286
TU142361 lncRNA upstream 587780 24107433 ~ 24107818 (-) True G96295
XM_043256259.1 mRNA downstream 8123 23465789 ~ 23505692 (-) True rps6ka2
XM_043255790.1 mRNA downstream 48964 23447333 ~ 23464851 (-) True sft2d1
XM_043255791.1 mRNA downstream 49003 23447333 ~ 23464812 (-) False sft2d1
XM_043254537.1 mRNA downstream 67649 23444179 ~ 23446166 (-) True prr18
XM_043254536.1 mRNA downstream 69752 23429646 ~ 23444063 (-) True si:ch211-130h14.4
XM_043255964.1 mRNA upstream 114063 23633716 ~ 23995593 (-) True csmd1a
XM_043255748.1 mRNA upstream 523983 24043636 ~ 24057904 (-) True angpt2a
XM_043254672.1 mRNA upstream 779282 24298935 ~ 24302415 (-) True LOC122356174
XM_043254701.1 mRNA upstream 791374 24311027 ~ 24313946 (-) True inaa
XM_043255979.1 mRNA upstream 808212 24327865 ~ 24341452 (-) False cnnm2a
TU142010 other downstream 518216 22994663 ~ 22995599 (-) True G96053
TU141976 other downstream 690556 22821981 ~ 22823259 (-) True G96036
TU141977 other downstream 691301 22821981 ~ 22822514 (-) False G96036
TU141882 other downstream 1070529 22379092 ~ 22443286 (-) False LOC122356262
XR_006252429.1 other upstream 750661 24270314 ~ 24270449 (-) True LOC122357144
TU142459 other upstream 823208 24342861 ~ 24344630 (-) False borcs7
TU142467 other upstream 879470 24399123 ~ 24403644 (-) False fgf8a

Expression Profile