RNA id: XM_043254877.1


Basic Information

Item Value
RNA id XM_043254877.1
length 763
RNA type mRNA
GC content 0.53
exon number 2
gene id mrps6
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 23167873 ~ 23168903 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAGATGGAGCGCGACGTCAAACTCCACGTGCGTCTCCGCGGTGTCTCCTTGAAGAAGACTCTCACGCGCACCTCCGTGACAGCTTTACGTCGAGAGTGGTTCGTTTCTCCTAAACCTCGTTCAGCCAGCAGCGGGAGATGCCGCGGTACGAGCTGTGCGTGATCCTGAAGGCGATGCAGAGGCCGGAGACGGCCGCGGCGCTGCGGCGCACGGTGGAGACGCTGCTGGAGCGCGGCGCTGTGGTCAGGGCTCTGGAGAACCTCGGCGATCGCAGACTGCCCTACAAGATCTCCAAACACGACTCTCGGCACACGCACGGCGGATACTTCTCCGTCGACTTCCACTCCTCGCCGGGGATCGTGAGCGAGCTGCTGAATCACCTCGAGCGGGACGTCGACGTGCTGCGACCGACAGTTTTAAAGAAAGACGAGCGGCTCGTCGCAGCGCGGTGCTGTGAAGCTCAAGCTCAGAAAGCGAAGAGGGCCACTTCCAGATAAACGTGAGAATCGGACTGTGTAGAAGGCATCATCTGCTGGATTATGTGAATGGACTGTTGCAACGAGACAAAACGAATAAATGTCAGcatcctttttatatttttgccgGAACGCATTTAACTTAAGCTAATTATGTGATGGGGTTTTTCCACAAAGAACTGTACATATGACCGCTTTGCGGGATCAGCGTTTTTGGAGTATTCAGTGTTAATATGACAGTTTCTGCTTCAGTGAATACGTGCATAAATAAACCACATAAAAATATA

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02990 RP-S6, MRPS6, rpsF; small subunit ribosomal protein S6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142099 lncRNA downstream 13378 23152205 ~ 23154495 (-) True G96108
TU142100 lncRNA downstream 13378 23152205 ~ 23154495 (-) False G96108
TU142019 lncRNA downstream 137973 23017198 ~ 23029900 (-) True G96061
TU142018 lncRNA downstream 160410 23006279 ~ 23007463 (-) True G96060
TU142011 lncRNA downstream 173304 22994152 ~ 22994569 (-) False G96053
TU142128 lncRNA upstream 7900 23176802 ~ 23178096 (-) True G96117
TU142211 lncRNA upstream 270375 23439277 ~ 23443783 (-) False si:ch211-130h14.4
TU142295 lncRNA upstream 369876 23538778 ~ 23542300 (-) True G96254
TU142315 lncRNA upstream 758429 23927331 ~ 23928060 (-) True G96265
TU142336 lncRNA upstream 873626 24042528 ~ 24067735 (-) True G96279
XM_043254869.1 mRNA downstream 782 23157102 ~ 23167091 (-) False LOC122356317
XM_043254868.1 mRNA downstream 782 23157102 ~ 23167091 (-) True LOC122356317
XM_043254876.1 mRNA downstream 31231 23134818 ~ 23136642 (-) True c1d
XM_043254796.1 mRNA downstream 348416 22802718 ~ 22819457 (-) True LOC122356266
XM_043254794.1 mRNA downstream 678550 22485289 ~ 22489323 (-) True LOC122356263
XM_043254695.1 mRNA upstream 15013 23183915 ~ 23238517 (-) False micu1
XM_043254694.1 mRNA upstream 15013 23183915 ~ 23238517 (-) False micu1
XM_043254693.1 mRNA upstream 15013 23183915 ~ 23238517 (-) False micu1
XM_043254692.1 mRNA upstream 15013 23183915 ~ 23238517 (-) True micu1
XM_043256000.1 mRNA upstream 155880 23324782 ~ 23329933 (-) True pla2g12b
TU142010 other downstream 172274 22994663 ~ 22995599 (-) True G96053
TU141976 other downstream 344614 22821981 ~ 22823259 (-) True G96036
TU141977 other downstream 345359 22821981 ~ 22822514 (-) False G96036
TU141882 other downstream 724587 22379092 ~ 22443286 (-) False LOC122356262
XR_006252429.1 other upstream 1101412 24270314 ~ 24270449 (-) True LOC122357144
TU142459 other upstream 1173959 24342861 ~ 24344630 (-) False borcs7
TU142467 other upstream 1230221 24399123 ~ 24403644 (-) False fgf8a

Expression Profile