RNA id: XM_043254888.1


Basic Information

Item Value
RNA id XM_043254888.1
length 3793
RNA type mRNA
GC content 0.45
exon number 7
gene id ky
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 5567502 ~ 5574433 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCCCTCTCTTGTATCTTTGAGCTCATTGGCTGTCATGATAAGTCCAAGTGTATTTTTAGCGTGCTATCCTTTCATAGGGGTGGACACAGGGAGAAAATAGATATATACAGACCCCTGCAATAGAaatcaaaacattatataaatctGCTACTGCCAACCATACAGAAGGTATGAGTTTCACAACTGCGAAAGGTCAAACTGATCAACAACCAATCACGACAGAAAACAGCAGCCGAGGCAGCCAACCAGAAGAAACTGTCACAGATTTAAACCTTGACACGCACAAACAAAACTTTGATTTGAAAGTCGAAAATGGTGGGGTCAAATACAAACTTGAGAAAGTATCTGAAAGCCAACAGACCAGGACGAAGGATGAGAACAGCACTGTCTGTTTGACTATTAAAAGCCACCGAGGAGGTTCACCTTCAGTGGAGCAAAATGACCTAAAGCCATTATCCATTGTACCGACACAAGAAAATGTGGATTCACATAAGGTATTGTTAGAGAACTATGAAGGGAAGTTATGTGAGGAACAACGGCCGAGTACAAAGCGTCAACTGTCTGCTGAGAGCGCGGCAAAGTCAGTGAGTGTAAGAAAGAGGAGCACTGTGAAAAAGAGCCAAGAAGAGATTGTGAAACCCCTCTCAGTTGCCAGGCCTGGCACGCTGTCTGGGAGACCTTATCTACCTGCAGTCTCCACCTCTCAGAGGAAACCCAGAAAACTGCTGTTCTCCAGCACAGACATTTTCAGCAAAGTAGACACATTCTCAATCCAGAAAGGAAGAGAGTTGAGGGAGCAGGAAGTATTTGATGCTCAGAAGATTGCTCGTGCAGTGACTGAGGGGGGCAGAAACGATCTGGAAAAACTCAGGGCCATATGGATCTGGCTATGCCAAAATATTGAGTATGATTTGGAGGGATACCTTGGTCTTTCTCAGAAGATTTGCTCTTCTGAGGAGGTCATCAGGACAGGAAAGGGTGTATGCAGTGGATACTCAGGCCTCTGTGTGGAAATGTGCAGggAGGTGGGCATTGAGTGTGTGGAGGTGAGCGGGTACAGCAAAGGCGTTGGATACCAGGCCGGGCACAGTTTAGCTGAGAAGCGTTCCGATCATGAGTGGAATGCTGTCTTCGTGGGGGGTCAGTGGTGGCTGCTTGACGCTTGCTGGGGCGCTGGCACTGTGGATatgaaaagcaaaacatttatgaagAGgtatGAAGACTTTTATTTCCTGACTGAACCTAGCGAGTTCATAAACTCACATTTCCCTGATGACCAGACCTGGCAACTACTTACTACTCCCATCTCAATGGAAGAGTTTGAAACGAGACCCTTGAAGACCTCAGCATTTTATCAGCTTGGATTGACCCTGACTCAACCCAGACAGCACAAAACCATCACAgACGACGGGGAAGCAATTGTTTCCGTGAGCTCCTCTAGACTGCTGACCTTTTCGTATGAGATGAGGCAGCGGGATCCCCAGACAGGAGCTCTAAAGCAGGAGGAGGTTGACAGCTCCTGTGGTCTCCTGTCAGTGACTCGTCAAGGGATGAAGTTGCGATTACTGCCCCCAGAGCCTGGGGCCTACGAGGTGAAGCTGTTCGCCCAGAGAGAGGGTGAACCTGGTGCTCTGAGGTGGATTTGCTCTCTTGAACTGGAGTGTCCAAGTATCCAGAAGAGGCAGGCCCTGCCTGATAACCCCTACGTAAACTGGGGCCTAGCGGCTGGGGCATCGGCGCTGGGCGTCAAGGGTTGCAACTTTGCAGGAGAAGAGGCCGTAGAGGTGGACGAAGGTGGCGAGTGCAAGGTGATCCTACACACGTCACGACCGCTGATGATGGTGTGCGAGCTTAAACACCAAGAGCTCGAAGCCACCACAGCCAAGCGCTGCCTTGCCTCGCAGATCACAGCAGAGCAGCTGGTGTGTAACGTCATGTGCCCGTACAAAGGATTTTACCGGCTGTCTATATTCGTGCAGGATTACCACAGCGGAAGTGGGACTTTTCAAAACGCCGGGAACTACCTGTTGCACTGTCAAAGCCCAGGGTCGAACCCAAACGCTCTGTATCCTCCAGACTTGGGCCTGTGGTGCGGTCCCGGAGTGCGTACCCAGGAAGCCGGACTGTCCCATTTCAGCCACACAGGGGCGATAGTGAACGCACCCCAGGCCCGGTGCAACATAACCTTCCACTGCGCTTCATCAGAGCTGCAAATACACGCGGCGCTCTGCGCTGAGCTGCATGAGCAGGCTCATTTTCCTCTGTCCCGATACGTACTCTTGACATTTACAGATACTAAGGTAACTGTGAGCGTGTGCGCGCCCAGAGCGGGAGTCTATCGTCTTGGTATTTACGGACGCAAACCCCCTCAGCAGGACTACATGTCACTGTGTGACTTTATAATCAGGAGCGTGTGTGAAAAGGCCGGGGATCCGTTTCCATGCGTGTATTCAGCGTGGGGAAGAGGGTGCGTGCTGCTGGAGCCCCGCACAGGTGTGCTGGCTCCACAGAGTTCAGTGAGTTTTCGCGTGCGGGTACCAGGTGCGcaaagagtgtgtgtggtgggAGAGAAACGAACCGATCTGAAGATGAATAAGAGCAGAGTTTGGGAAGGTGAAGCTGTCACTGGAAATGCCACACAACTCAAGCTCGCTGCTGTCACTAAAGAAAGCAATGACATGCATGTTCTCATGACCTTTGATGTCCTTAACCTGAAGAATGAACTGTGAACAGAACAGACGGCTGTCTAGAGGACAAAAGGGCTACGGTCACACTGCATGTGGACCAGTCTTCACATGatgcaacacatttttttgataGTGTGAACCTTGAAGATCTGGTCATCCttcatatttagaaataaatcagaaataaatctgtttaccaacactaataaaaaaacgGTAAAGACAGAAccatttacaacaaaataaacaaacatgagAAGATAaacttcataaaatatatatttttttcatttagaaatttttcattaaatttaattagttttatgcctgaaagaagaaaacaactgCATCAAATATTTATCGTAACAATCCTTATTACAGAGCATTTTAGAGCAGTTTAtgataaaaaactatttttaatcacaggcataacttatattttaaatacaaaaaaagttttgtaataatattcttttttatagtAATACTCACAATATTaaagttactgtattttttttatcataaggtaagcataagagacttttggCAAAAACACATGAATCATGTTTGATCAGAAGTGGGCAGTTTTTCTTGCGGTGTAAAAGTAGCctaaaaaaggaaggaaaaaacaGGGGAAAAGCGTATGTAAGAAACATCTCCAGGTCAAAGTTTCATAATGTCCgcacagattttaaaaataagctgTTTCTTAATGACATTTatgtcactctgtgtgtgtgtgtgtgaacgttaTATTTTCACGGTGAGTCTGTATTCTGTATAACTGTTCTTTGGCTCTGTAAGTGTCAGTGTATGCAACAGAAAGGACTATTACTGTCCATCCTATAGACCCTGGCAGTGATCAAAAGGCAGAGATGACCAAACAACTGCCGAACTCAATGTAGCCCAAACATGCTAGCAACAACCATGTGTTATGGGTTTGATATGCATTAGCTTGAATGCAATGCACTGTAAGTCACTTTGTATAAAATGCCAAACGCATAGATGTACACGTTCAATCTTAAGATGTGATGCATATACTCTTATATCAATTCTAAGTtttaaactgataaataaaaatgctaaatgctgaAAAAGGAGGAGC

Function

GO: NA

KEGG:

id description
K24456 KY; kyphoscoliosis peptidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134758 lncRNA upstream 42390 5523745 ~ 5525112 (+) True G90997
TU134737 lncRNA upstream 61992 5501642 ~ 5505510 (+) True G90985
TU134692 lncRNA upstream 131931 5397495 ~ 5435571 (+) False G90957
TU134690 lncRNA upstream 131931 5433582 ~ 5435571 (+) True G90957
TU134687 lncRNA upstream 296303 5270601 ~ 5271199 (+) False ap5s1
TU134764 lncRNA downstream 6792 5581225 ~ 5597345 (+) False G91003
TU134970 lncRNA downstream 190273 5764706 ~ 5765211 (+) True G91124
TU134972 lncRNA downstream 193741 5768174 ~ 5768524 (+) True G91126
TU134973 lncRNA downstream 194857 5769290 ~ 5769518 (+) True G91127
TU135040 lncRNA downstream 298574 5873007 ~ 5876739 (+) True G91174
XM_043256276.1 mRNA upstream 136154 5344526 ~ 5431348 (+) False gfra4a
XM_043256275.1 mRNA upstream 136154 5344528 ~ 5431348 (+) True gfra4a
XM_043256127.1 mRNA upstream 296255 5261036 ~ 5271247 (+) False ap5s1
XM_043256126.1 mRNA upstream 302615 5261037 ~ 5264887 (+) True ap5s1
XM_043254582.1 mRNA upstream 308293 5252901 ~ 5259209 (+) True cdc25b
XM_043255787.1 mRNA downstream 134088 5708521 ~ 5740890 (+) True fgfr3
XM_043256158.1 mRNA downstream 220807 5795240 ~ 5807876 (+) True nsd2
XM_043256160.1 mRNA downstream 220807 5795240 ~ 5807876 (+) False nsd2
XM_043256162.1 mRNA downstream 220807 5795240 ~ 5807876 (+) False nsd2
XM_043256161.1 mRNA downstream 220807 5795240 ~ 5807876 (+) False nsd2
TU134595 other upstream 569606 4992327 ~ 4997896 (+) False si:ch73-49p17.1
TU134239 other upstream 1323461 4182499 ~ 4244041 (+) False G90660
TU134245 other upstream 1323461 4182499 ~ 4244041 (+) False G90660
TU134242 other upstream 1323461 4241132 ~ 4244041 (+) True G90660
unassigned_transcript_1924 other upstream 1495603 4071806 ~ 4071899 (+) True trnai-uau_4
unassigned_transcript_1926 other downstream 1556993 7131426 ~ 7131496 (+) True trnag-gcc_68
TU135767 other downstream 2261757 7836190 ~ 7838941 (+) False chchd1
XR_006252298.1 other downstream 2284265 7858698 ~ 7881483 (+) False zswim8
TU135961 other downstream 2732053 8306486 ~ 8310824 (+) True G91833
XR_006252358.1 other downstream 3091835 8666268 ~ 8683052 (+) False pcnx2

Expression Profile