RNA id: XM_043254899.1


Basic Information

Item Value
RNA id XM_043254899.1
length 3758
RNA type mRNA
GC content 0.53
exon number 8
gene id srfb
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 22157665 ~ 22183174 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCTGCGGCGTCGCGAAGCGTCACACACGCGCGGTGACTGTCAGCTCTGAGCGGCTGGACGCGGAGTCGAGGCGTTCGCGGCGCGTTGGCGAAACAGAGCTCTGATTTGACGCGTTCGCGGCGCACTAGACGACGCGGCGGAGGGATCGCGGAAGCGCTCGTGCGGTTTTCCTTTTAGAGAAAGCGTGTCTTTCGCGGAGCTCCAGGGGGAAGGGGAAGCGGGAGCGAAGCCGGCCGGAGGCGCTCAGGTTCAGCATCACTTCTCAAAGTTTCTCGCGGACTCTGCTGGTGTATGAGCGCCGCTGCGGATCTCGCTCTCTCACCGACTGTCGCTCCAGCGCTCCGCTGCCGTCACACGGATCGTTCTCCCCGGGTTCTAGGATGTTATCCAGCCAGACCGCAGCGGCTCTGAGTGGAAGCGGATCAGCGGCGGGGAAGAGCGCAGGCCACGGCGCGGTGGTGATGGGCGCCGGGGTCCGTGCGGGGTTCGCTCGGGGGCTGGGGCCGATGGGGCTCGGGATCCCAGGGAGGTTCGAGCCGGATAAAGAGGGACCCCCGCACCTCTGCAGCGGCTCCGACGCGGACTCCGACTCCGGCGATGAGGACGAGCTCTTGGGGTCAGTCGGGGACAACCGGAGGGGAGGCGGCGTCAAGCGGGAGAGAGCAGAGATGGAAGCCGCGATTGTGGGACCCGAGGCCGGCTTGCCTTCCGCGGCGCTCGCGGCTGGAGCGACTGGAGCGAAACCGGGCAAGAAGACCCGCGGAAGAGTGAAGATAAAGATGGAGTTTATAGACAACAAACTGCGTCGGTACACGACCTTCAGCAAGAGGAAGACGGGCATCATGAAGAAGgcgTACGAGCTCTCCACGCTCACAGGGACTCAGGTTCTTCTGCTGGTGGCCAGCGAGACGGGACACGTCTACACCTTCGCCACTCGTAAGCTGCAGCCCATGATCACCAGCGAGACGGGCAAAGCTCTGATCCAGACCTGTCTGAACTCTCCAGACTCTCCGCCTCGCTCCGACCCGTCCACGGACCAGCGCATGAGCGCCACGGGCTTCGAGGAGACCGACCTCACCTACCAGGTGTCTGAGTCCGAGAGCCTCGGAGAAACCAAGGACGCTCTGAAGCCGTCCTTCACCGTGGCCAGTGTCCCGGGCAGCAGCACCGTCCCCAGCTCGTCCAGCAGCCCGTCCTTCCCCATCACCAACTACCTGCCGCCGGTCAGCGGGAGCGGAGCCAAGAGCACCGGGGCCCCTGGAGGAGTCATGCAGCTGCCCGCCGGCTTCACCTTCATGTCAGGCTCTCCGTTTGCTCCCGGGACTCCTGCGATTCCTCTGGgtcagctgcagcagcactctCTGGCCGGTCAGAGCATCACGGCCCCGGGGTCCGGCTCGTCTCAGGGTCAGCAGGGTCAGCAGGCTGTGTTCCGTCTGCCGGCCACCGTCTCGCTCGCCGgcggAGCGATGCCGCAGCAGCTCCAGACCGTCCAGGTCCAGTCCAGCAGTCAGTCGAGCTGCATCAGCACCAGCACCAGCAGTCCAGAGATCTCTCAGAGCAGCACGGCGtccacagctgCGGTCAGTCTGCAGCCGGCCACCATCGTCACCTCCTCAGTGCCCACCTCCATGACCGGTCACATGATGTaccccagcacacacacactcatgtacGCATCCGCACCCACGCTAGCAGACGGGAGCGTAGCGGTGCTCAACGCCTTCACACAGGGACCGGTGTCACACACACCGACTCAGGACACAGgtggcGTTCCTCAGGTGTTTCTCACAGCTCCTCCCGGTACGGTTCAGATTCCCGTCTCGGCGGTGCAGCTTCATCCAGTACGGCAAGATCAACACTTCACAAATGGTGATTGGTCAGCAGTCCAGCGGCAGCAGCAGTAGTCTGACCGAGCTTCAGGTCGTCAGTCTGGACGCCTCCCAGAACGCCAAGATCGACTGACCGCGCCCACAGAGACTGACGCCGCTATTTATTAACGCCTTCATACAGGTCCTCGTTTATACGTCTGACTCTACGGTTTCTGCTGGAGACAGCCACGGCACAGCCagtgagaagtgtgtgtgtgtgtgtgtgtaaaagtgagAGAGTATAAGTATTGTTTTTGCATGCGAgccgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcggtgtgtgtgttcggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtttggctgcaAAGttatctgaacagatttggaaaataAGACGAGACATATGGAAATGTACATAacctgttttttaatatttgagatttgttttgcctgtttgtGCGATGGCATGTAGTtgtttttatagatattttgtaTACATTGTAACTTGTTTTGCTTATGAAATCTGATATTTCACCCtgtaaattaatgtaatataaacatatattatattgatttatacACAGTGTTCTGACGAGAAATACAAAGATTTAGGATCaaactctttttctctcttttgtaaCGTGAATGTGCCAAATCTcctctaaaaacacaaatgaaaagagagagaaagaggtttGAAACGCTGTTTATCCCCGAATGCTGTTGATGATTCTGCCCGTGACACCCCGATGCCTACGAACGCTGAGAAACGCCTCAAACTGAGACAAAACTAAagaagttcacccaaaactagAATGTGCTCCCCTCAGCTCGTCCAACATTCAGATGAGagtcttcatcagatctggagaaatgtgtctcagtgaagtgaatgggtgccgtcagaacgagcgtctcataaaaacatcacactAATCCGCAGcgcatctggagaagacaaaagatcaaactaatccagcgttAAGACGTTTATAACTGCGGTATAAATCCATAATCTGTAATAATCCAGTGGAAAAAGTGAAATCTGCTCAAATCAAACAcaactttttaaagcttttttttagtctgttgtctgatggatgtttttatcagctctttggactctcgttccgacggcacccattcacatccattgctgggACGCATTCCTCCAAATGAAGAAACAGATGAGCACAGTTTCAGCAcagtttttggttgaactaataatgtgtgtgttgcaCAAGTGCCCTGTCGATCAATCTAAGCGAAGAACGTCATATTGATGTTAAAGTGAATGAACGTGACAGTCGGTCTGAAGATGTCTTTCTTCTGTCTGTGGTGATGTTGTAAAGGGCTTCGGTCGACGGCTCAGAAGCTCTTGAAGCTCTTGAAGCTCTTGAAGCTCTTGAAGCTCTGCTGGAGGAGGTTCGCTGGCCTTAATATGCTCTGCGTGTTTTGAATCATCTCATACGTTGCGTTTGACGCGTTTCACATCACGCTGTTTTAGGgcttattttcttttgctttttccatcttttttttcctctccttttAACCTTGACACATGGCCACATTTTTACTGCGTAATGCTGAATATTTAGAGCTGATCCTCACTGAATGTGCTCAGAAAGCCTCTGTATCTGAGCCGGTTTGTTTGATATGTTTTGGTTAGTTTTAGAGAGACTGTGTGAGAGTAACACTGGTTCTTCTGTTGGATTATTGTGTGATTTTTCTGGTTTCCGACACGGCAAATGTACAGacctttttgtaataaaaaaatggatctTGTCA

Function

GO: NA

KEGG:

id description
K04378 SRF; serum response factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252426.1 lncRNA downstream 14893 22137388 ~ 22142772 (-) True LOC122357128
TU141813 lncRNA downstream 21274 22135936 ~ 22136391 (-) True G95922
TU141782 lncRNA downstream 37223 22114696 ~ 22120442 (-) True G95902
TU141784 lncRNA downstream 117559 22039782 ~ 22040106 (-) True G95903
TU141779 lncRNA downstream 282736 21874513 ~ 21874929 (-) True G95899
TU141833 lncRNA upstream 45011 22228184 ~ 22230539 (-) True G95933
TU141841 lncRNA upstream 64883 22248056 ~ 22370625 (-) False G95938
TU141836 lncRNA upstream 113168 22296341 ~ 22297227 (-) False G95936
TU141845 lncRNA upstream 120132 22303305 ~ 22303781 (-) True G95941
TU141840 lncRNA upstream 123895 22307068 ~ 22370625 (-) True G95938
XM_043256219.1 mRNA downstream 821 22152035 ~ 22156844 (-) False tmem254
XM_043255712.1 mRNA downstream 105979 22041455 ~ 22051686 (-) True pwwp2b
XM_043254889.1 mRNA downstream 133055 21908358 ~ 22024610 (-) True LOC122356328
XM_043254705.1 mRNA downstream 290767 21847430 ~ 21866898 (-) True valopa
XM_043256060.1 mRNA downstream 834664 21269350 ~ 21323001 (-) True LOC122356942
XM_043254790.1 mRNA upstream 1867 22185040 ~ 22227004 (-) True ptk7b
XM_043255446.1 mRNA upstream 48276 22231449 ~ 22250313 (-) False klc1b
XM_043255444.1 mRNA upstream 48276 22231449 ~ 22250313 (-) False klc1b
XM_043255445.1 mRNA upstream 48276 22231449 ~ 22250313 (-) False klc1b
XM_043255443.1 mRNA upstream 48276 22231449 ~ 22250313 (-) False klc1b
TU141795 other downstream 806 22151742 ~ 22156859 (-) True tmem254
TU141794 other downstream 841 22151742 ~ 22156824 (-) False tmem254
TU141816 other downstream 13695 22138329 ~ 22143970 (-) False LOC122357128
unassigned_transcript_1933 other downstream 503984 21653612 ~ 21653681 (-) True trnag-gcc_72
unassigned_transcript_1932 other downstream 583344 21574251 ~ 21574321 (-) True trnag-gcc_71
XR_006252351.1 other upstream 49641 22232814 ~ 22250313 (-) False klc1b
TU141832 other upstream 52931 22236104 ~ 22238570 (-) True G95932
TU141837 other upstream 113168 22296341 ~ 22297227 (-) True G95936
TU141850 other upstream 143537 22326710 ~ 22329260 (-) False ypel5
TU141887 other upstream 188394 22371567 ~ 22438998 (-) True LOC122356262

Expression Profile