RNA id: XM_043254963.1


Basic Information

Item Value
RNA id XM_043254963.1
length 1545
RNA type mRNA
GC content 0.44
exon number 7
gene id rtn1a
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 11557359 ~ 11577350 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgtccATTATTAGCCAATGGTAGTATGAGCCGGTCCCCCTCCCTCTTATTctctgcctttctctctctccttttgtGTGCGTTCCcactcactgtctctctctcttcttcttgcTGTCTGCAGTCATGGGTGGTTCAGTGGTAGATCTGTTACATTGGCGGGATTTGAAGCAGTCCGGACTGGTGTTCGGCAGcgtgttgctgctgctgttctcTTTAACCCAGTTCAGCGTGGTGAGTGTCATAGCGTATCTCGCTCTGGCTGTCCTCTCCGCCACCATCAGTTTCCGAGTCTACAAATCAGTCCTGCAGGCAGTGCAAAAAACCGACGAGGGCCACCCCTTCAAGGCCTATCTGGAGGTGGAGATCGCTCTCTCTGCGGATCAGATCAGTAAGTATGTGGAGAAGACTCAGCTGTACATCAACTCCACCATGAAGGAGCTTCGCAGGCTGTTCCTGGTTCAGGATCTGGTCGATTCTATAAAGtttGCAGTGTTGATGTGGTTGTTGACCTATGTTGGAGCTCTGTTTAATGGCCTGACCCTGTTGATTCTGGCGGTGGTTTCCATGTTTACCGTGCCACTGGTTTATGAGAAGTACCAGACACAGATTGATCAGTACTTAGGACTTGTGCGCACCCAGGTTAACTCGATAATGGGAAAGATTAGAGAAAAGGTTCCTGGGGCCAAAAAGAAGGAATAAACTCTTCACTTCTGTACAAGTAAACACTATAGCCAGTAAAATCTACAACTTTGCCAGCACTGAAGGACCCCAACTACACAGGAGGCCAATGTCacctcaaaagaaaaaacaaaaaaaaagcatcaacagCAAAAAGACATCATGATGTTAGTTAATGGCACCAATCCCCCCCCCTTTCCTCTCCCCATTGTTGCCAGCCACAGGTGAAGCCCTGAAGTAACTAACACTGATTCACATAGATGACACCTTGTGGGCGATTGTAGAGCTATAGATATACCAGAGGGACACACACAGTACTTCTCTCTTCCATTGCTTCTGATTTAAGTGCATGAAGTCCAGTCTTGAGTAAATATTTGCTATCTCTGCAGtgctcttcctctctctgcttTATTTTGCAGTGCATATTTCCTGCTGTAAAATGTGACACGAAAATGAAAATCATGCCTGTCATATAATCTCCTGCTGCCATGTCAATTAATCGCTTCAATTCACCGTCACTGGTAGAGTGGCTCTGTGTACAGACATACTTATTAATATCGAGTTgaattgtggatttttttttttctgttcttttctgtgTATTCGAGCACAATGATAATTTGAAGATGTTATTACtaaatgtgtaactgtaatttttgcagaaatgtagggATACGTGTAGGTGTTTAAAGACAAGCTTTGTGGTCCTTCTCTAGGGCACCTGATTGTCAGACTGCAGAGCTCCAGCTGTACTAAACTCTGTCCAACTTTGTACGATGTTCAgtgttcagttattttaaagtctttaaCTATTTGCACTCTGTATTTAATTAACGAatgggaaaaataaatgttccttAATGTA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137563 lncRNA downstream 144106 11412183 ~ 11413253 (-) True G92935
TU137562 lncRNA downstream 145920 11410630 ~ 11411439 (-) True G92934
TU137428 lncRNA downstream 294722 11257080 ~ 11262637 (-) False G92842
TU137429 lncRNA downstream 294722 11257080 ~ 11262637 (-) True G92842
TU137439 lncRNA downstream 408107 11146178 ~ 11149252 (-) True G92848
TU137736 lncRNA upstream 61740 11624798 ~ 11625140 (-) True G93062
TU137737 lncRNA upstream 66382 11629440 ~ 11629749 (-) True G93063
TU137742 lncRNA upstream 82331 11645389 ~ 11648035 (-) False six1a
TU137783 lncRNA upstream 174959 11738017 ~ 11738231 (-) True G93099
TU137799 lncRNA upstream 238957 11802015 ~ 11802286 (-) True G93111
XM_043255344.1 mRNA downstream 17256 11533450 ~ 11540103 (-) True pgam1a
XM_043255340.1 mRNA downstream 24902 11525403 ~ 11532457 (-) False zdhhc16a
XM_043255341.1 mRNA downstream 26053 11525403 ~ 11531306 (-) False zdhhc16a
XM_043255339.1 mRNA downstream 26053 11525403 ~ 11531306 (-) True zdhhc16a
XM_043255347.1 mRNA downstream 33439 11520086 ~ 11523920 (-) True ubtd1a
XM_043254809.1 mRNA upstream 39562 11602620 ~ 11606263 (-) True dhrs7
XM_043254698.1 mRNA upstream 80872 11643930 ~ 11647926 (-) True six1a
XM_043254879.1 mRNA upstream 91332 11654390 ~ 11661586 (-) True six4a
XM_043254880.1 mRNA upstream 115559 11678617 ~ 11681317 (-) False trmt5
XM_043254881.1 mRNA upstream 115559 11678617 ~ 11681222 (-) True trmt5
XR_006252349.1 other downstream 26050 11526180 ~ 11531309 (-) False zdhhc16a
XR_006252282.1 other downstream 338374 11200946 ~ 11218985 (-) False rassf4a
TU137394 other downstream 622028 10924944 ~ 10935331 (-) True G92819
TU136940 other downstream 1366849 10185761 ~ 10190510 (-) False LOC122356841
TU136576 other downstream 2441808 9115093 ~ 9115551 (-) True G92267
XR_006252352.1 other upstream 208370 11771428 ~ 11799032 (-) False utp25
XR_006252291.1 other upstream 866139 12429197 ~ 12430778 (-) False tmem234
TU138208 other upstream 994019 12557077 ~ 12597302 (-) True LOC122356414
TU138426 other upstream 2001364 13564422 ~ 13567925 (-) False srd5a2b
TU138887 other upstream 2133014 13696072 ~ 13696792 (-) False map3k4

Expression Profile