RNA id: XM_043254986.1


Basic Information

Item Value
RNA id XM_043254986.1
length 9751
RNA type mRNA
GC content 0.49
exon number 41
gene id zfyve26
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 12298229 ~ 12322701 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATGACTCGACTCTCTCATGGCCACATACAGCTGATGGCAAGCGTATTTGAACGCGTTGTTCTCTAGTCTGAGATATAAAGAACAAACTCAAATCATATGGCATACTTCATAGCACATCTGAGGCCAGTAATCTTTCCGTGGACCTCAAAATACTGTTGAATCGAAAGCGGAGTGTCTGTCATGCATCCGTTTGGCCGCGAAGAAGAGACCTCCAGACGCGAGCTCTTCGGATTCTTCACGCGGTGTTTGGCGCGCGGTGAGTGGGAGGTCGCTGCTGCCTGCGTGGGTCAGCTCAGCCATGCGAGCGGAGATGATCCCCACGGCCCGCACAACATCATTAAAGCCATCGTTACCAACCCATACCGGCTCAGGTGGGAAACAGTGGGAAGCCCTCACAGACTGGCCTGGTATTGGCTTCAAGTTGTGGAAAAACAGACTAAAATAAAGGTGAGCGGGCCTGTCAAGAGGGAGCTGGAGTTCATGTTGCTTCTAGAAGAACTTGGAGACGTGTCATTGTCTGTGCTTAAGGAGCTGCATGAAGCCTTCCTGTACTCTGAGGAAGTAAAGGGAAAGATTCCAGTTGAACCCACCCCTCCACTGAGTGCTGCTGTTGTCTCCTGCCTCCGTTCTCTTTTAACCTGCCAGCAGCCCCGGCTCTGCCACTCTCTCATCAGCTTCCTTCAGAACTCAGGCCACTCCAGAAACCACGCCTTACAGGACGTCTTCATCCAGCACCTCACTGAAAGAGTGAACGTACCTGTGGACGAGAGGAATGAGAAATGGGTGGAGGAGGTGTGTTCAGCGCTGGCTTTAGCACCATGGGGGCCAGAGAGGTCAAATGCTCACCTAGAGACCCTGTGGAAGGGTTTGTGGTCGGCTAGAGAAGGGCCCATGACAGAGGAGAGAATTCTGGGATGTCTGCTGAGGCCGCGGGGCCAGACTCTTTTGATGTCGTACAGCTCCACAGCACTCAGACTGCTCAAAGAGAAACTGCTGAGAGAGTCTCCACATACACAGGATGACTTGCCTGATCTGGAAAAGGTCATGCTTGGATTGTGCTGTCACGGTGACAAGCGTTTGGTGTGGAAAACCATTTACTTTGAGTGTTTAAGCACTGGAAAGCACTTTCTCGAGCAGGTTTTGCTTACTGGTTTAGATCTCATAAAGCGGGAGGAGTTTGCCAAACTGGAAACACTATTGCAGTCTGAGTTTCAGCCTTTGTCTCGCCTTTTCTTGTTGTTGGGCTGGATGCATTGTCAAAGTCTGGATTCTGCCAAAACCCTTTTAAGAGTCCTACATTATCAACAGcCCCAGACAAATGATTCAGTATTGAGTGAGTTAGCTTGCACTCTGTCCTCTCAACTTGGTGTGCTGGAATGGTGTGACCAGAACAACCCAGGGATATCCCATGATTCCTTGCTGAGTCACTTACACATGCTGGACCATCACTCTGCCCTGTACGTGCTGCACTCCCTGACGCCCCTTGCCAAATACGAGGAGCACAGAGTTCTGGAACTGCTGCAAAGAACTGGAGATCCTTCATTAGTGGATTCACCCAGCAGCTCTGTCCAGCGGAACATCACTCTGTTTCGAGGCTTCTGTGCCATGAAGTATGCCCTCTATGCCATCTGTGTGAATGCGCACATGCACACCGGCTGCCTGGACTGTGAGCCACTGCATCAACTGCAGACAGAGGCGGGTCAGGGGGAGGAGCCAACCGAAGGGTGCTCTGATCTATTCCAGCACTGTCTATCAGAATGTCAGCTGTACCTGGAAGCTGTTCCAGCATTATTCCGTTTGGAACTCTTGGAGAACATTTTCTCCCTCCTCTTCCTTTCTGACTCTGACTTTAGCCCACAATCAGATCAGATCAGCACTGGCACAGAAACCCAACCGGACACAAATGtagagaaaatgaaattaaacagtGCTGAAAAAGAAGTTGAAATGATGGAGGAATTGAAAGAAGAGATCCAAAGTAGAGATTCTGATCAGATGAACCCTGAGCTGGGCCACCTGACATCAGGGTGTCGGGGGTTTCTTGTTGATTTGAGTGTAATGGAAGGAATTCTGCGGCTGGTGAAGGAGGGCTTGGAGGGTGTGTGTGGAGTTGGGCAGGAGGATGGCAGGGCACTTGCGGCCGATACAGAGTTGGCAGAGAGTCTAGGATGTTCTGTTACAGCGGAAACATTCAGCTCCAGGTTACAGAGGTTGTCGAAATACACTGCAGAAGCACAGTGGAGATTGCAGATTGTTACTAGTAACCAAGGCAATGGGAATGatGGCTTGTACCTCCCATCTCCACTCCCCAGTCCAGCACTTCCTCTGAAACGCCAGGGCAGTGGCAGCAGCAACTCAGGTGTTCGGAGGAAGAGAAGAAACCATCGGCACCGCTCTGAACGTCACGCCTCATCTGAACGACAGAACGGGGAGGTCAGCACCAGCACCTCAGATGGTGGAGTGTGTGCTGGGGCTGTTTGCCACGGTAGTGAAGTGTGTCCGTGTGGTGGACCCCACAGCTGGCTGGTTCCTGCAATGCTTTCCCCGCCTGAGTCTCTCCTCATCGCCTGCATACGCAAAGGCAACTACATAGAGGCCCAGCAGGTTATTGCGATGTATGGCTTGGAGAGCTCTGAGTGTGCAGGTGAACTGGTCTTTATGGACCGGTACCGGGAGGTCCTGGCTGAACTGGGTCAAGTGGAGCAGAAGATAGAGAGTCAGTCACTTCCTTCATCAACCTCATCTTCGGAGGGTCTGATCACATTGGGTGTTGCTCCAGCGGTTAGGGCCAGAAtgggcagcagcagcagattaACACTTAAAAGCATTGGGAGCGCCGCAGCTGCAGgtatggCCTTTTATTCTATCTCTGATGTGGCTGAACGTTTACTCAGTACCTCAAGCCGGCCGATACCTTGTCTAGAGGACAATTACTGGCTCTCTCAGCGCTCTGTAGACTCCCCAGACCTTGTGCAACCTCTGCTGGAAGAGTTGAGCCCTGCAGCTATGGCAGCCTTTGACCTCTCCTGCTGTCAGTGCACACTGTGGAAAACTTCAAGGCAACTGCTTGAGACTGCTGAAAGAAGACTCAGCAGCTTTTTGGAAGCAAGAGGTATGCGAGTAGATCCAAAGGTTCCTCACACCAGCGGTATTAGAGGCTTCCCCTCAGTTCTCCAACAAATCAGCAAGATCCTTAATAGAACCTCCACCAGCAAAGGAACAAACTGTAATGGAGAGGAGAATGCTGTCTACAGCCCCTTTGGCTGTAGTGCCCAGGAAGTGTTGCTGTCTTGTCATTCAACATTAACAGAAGAGAGTATTGCCTCCCGTCTAAACCTGAATCAGCGCCTAGAGGTCACATTTCAAACCCTGACCTCTGCCACCAACACCTCAGATGGTCTGATGGGAAGCTCTCTCCTGACAGCGCTGACTGAACAGGCTGGTCTTAAGCAGTCTGAACTCGATTCCCACCCTGTGCGAACTGCTATGAAACAGCTCCTACAATATTTAGACCAGCTCTGCCCGTTTGAGCCTGACAGTGCCCCTGGCAGGCCAGATTACATACGCAATTTCCTTGATTATGTCAATGTGTTGGCTTCAGTACTGGTGCGCAGTCTATGGTCAGAAGATCAGTCCACAGAAGTGAAACTCGGAAATCCTCTATTACTGTTGCTTCAGTCACCGACCCAGCTTCTCTCGCTCCTACTGTTTGACAGACAGGTGTCACCTGACAGGGTTCTTTCTCTCCTGCAGCAGGAGCGGTTGCGCTTGAGTGTGCAACAGGTTGTAGTTCAGCGCTGCTGTGAAGCTCTCCCTCTCTGGGATTCTAGGTCTGCAACCTTTTCTCAGGGGCAACCGAGGATTGCAGGGCTCAGCAGTGGGGTGTTCTGCCCAGCCAGCATTGCCTCAATTCTCCAGCAGTACGCTCAGGAGTGCGCCCCGTCCCTTGACCTCTCTGACCCTGCCACAACCTCTGAGCCCAGTTCTGAGTCTGAGGTCTCTGTAGAGGAAATTTCTGCTACATCCACCAATCTCTCCACCTCTCCACCTTCCCCATCTTCATGCCCcccttcttcttttcttctcacTCCATCTGCACTCTCTTTCCTGAAGTCTCGTTCACCCCTCGTTGCCGCCCTGGCTTGCCTCAGTGCCAGTCGGGGTGGTGTGACCCGAGCAGCCTCCTCTGGCTGGTCAGGCTATTTCCGTGGATCTGGACGTAAAGAAGTGGTTTTGGATGGAGACCAGATCTCAAAGGAAGGGGAATTGCTGCTTAAAAACTTCCCTATCCTGAGAATGTACTTACGGACCATGGCTGAGCCAGTTTTAGGGGTCTCATTGGAAGAAGATGAGGGTCTTGGGGCAGCTCTCTGTGGGAAGCCTGTGGTGGGAATGTTGTTTTCTGGCTTGCAGAGTAATGTGGGACAAGCAATGGCTGCCGAGGCTTTTCAGCAAGCACTAAACATGGGTGATCTGAACAGAGCCCTAGAGCTCCTAGAGCTGTATGCACAACCCTGCAGTCAGGAGGGGGCACTCCGGGACAAACTACTGGCATGTACTGCACTTCAGGAATGCAGCAGTGCGGAGCAGTTGTTTCGCGTAAGGGACTGGGAGCTGCGTGGACGTGTGGTTCTGCAGGGCTTGGACCGCTGGCCTTTACAACAGTGTTTAGAGCTGCTGGAATTCTGTCTCAGTGACCAAAGCACTCAGGATCCACTCCGAGAGCAGCTTCAGCAGAGAAAACATGAGCTGGACATGTACCAGCAGatGCTGAGTTTGCAGCCACCATTGCCATGGGAGACGTGGCAGGAGTTGAGGGAGGAGTCTACAAAGAATCCTGAATCCGTATTCAGTCTAATGCTGGAGGCCAGGGAGTTTGAGTTGTGTACCCAGTGGGTGCATCTGTATTCAGTTTCTGATCAGTCTCGAATGCAGCTGCAGACTGAACACCTGCTATACCTCCTAGAACAGAATCACACAGAAGATGCTTTccagCTCTTGGAGGCTCTCTCTGATTCAGTGGGTTTGGAGGTAAGTGAGCGAGCCCTGGATCGAAGACCTGGACTAGCTGCTTGCCACTTCCTTTCAGACTACCTCACCCTGCACTTCCAGAGTCAGATGACCCCAGCTCGAAGGCGTCACATCAATGCCCTTCACCTTGGCTCCAAGGTTCTGCTCACTTTGCCGGAAGCATCTCGTCAGGACTATTTTTCCTTGCTGTCTGATCCGCTTCTCATGCTAGAACAGCTGCTGATGAATCTTAAAGTTGACTGGGCTACTGTTGCCATAAGCACTCTACGGAGCCTTCTGCCAACTCAGGACGCCGGCATCACTAACCAACACATTGACGCTCTTCTGGCAGATTACGCCCGGAAGGCTCTTGATTTTCCTTATGCACCCAGAGAGTGGTCACGTTCTGACTCTGTCATTAGTCTGCAGGATGCATTTCTGCAGTGTCCAGCCCTGGAGAGTGGCTCCTCTTCTCCAAGCCACACCCCTCCGCCATCAGCAGGCAGCACACCCATGCATACACCCTCTAGTGAGAGACGCCCCAGTGCAAAGAGGATCCGGCAGCTGGCCACACCTTTCACCCCTCCGGAGAAAACCCCTGACCGCAAGGACTGGATCCCAGACCACAAACAGCACATCTGTATGGTCTGCCAGAGGGAGAGATTCACCATGTTCAACAGACGGCACCACTGCAGACGCTGTGGCAGGCTGGTGTGTCattcctgctccagcaggaagATGGTTGTAGAGGGCTCTGAAGAGTCTGTCAGAGTTTGTGACCAGTGTTACAACTTCTTCCACGTGGATTCAGATGAGGAGCTTGAACAGGGAGAAGTAGCTGGCAGCCCTGCATCTGTTGATGGAGTCCTAAATGGGGTTCTCAGTCTGCCTGAGGTTCCACGAAAGCAGTACCGCCTGAGTCCAAACCCAGCAGAGAACCAGCAGCTGAAGAACGAGTTCTACTATGAACAGGCACCCAGCGCATCCCTGTGTGTCGCTATACTGACGCTACACAGTGATCACGCAGCCTGCGGGCAGCAGCTGATTGTCCAGTGCCGCTCACTCTCCCGCAAACTGACCAATCCTGAAGTGGATGCACGTCTGTTGACAGATGTGATGCGTCAGCTGCTGTTCAGTGCCAAACTCATGTTTGTAAACGCAGGATGCACCCATGAGCCGGCACTCTGTGACAGCTACATCAGTAAGGTGGATGTGCTGAAGATCTTAGTCACTGCAAACTACAAATACATTCCATCTCTAGACGATATTCAGGAAATGACTGCAGTGACACGTCTGCGAAACCAGCTTTTGGAGGCTGAACACTACCAGCTAGCTGTGGAGGTGTCGACTAAGAGTGGGTTAGACCCGAGCGGAGTTTGGCAGGCCTGGGGTATGGCGTCTTTAAAGGCTGGGAATCTGAGCGGGGCCAGGGAGAAGTTTGCCCGCTGTCTAAAAGCACCAGTAGATCGGAACCAGCTAAACCATGGAGTGAGACTTCTGCAGGAGATCGTTCAGCACCTCGAGTCCACAGTCAAACCTACTATCAACACGacTGTGGATGAGGACATCCTGGCCTCCTTGCGTGAACTGGAGGAGGCTCTCTCTGATTCTGCTCCTCTAGATGGAGCAGAGGGCAGAGTTCAGCGGTGCGGCTATTATCAGGAGTGTCTGTTTTACCTTCTTACTTATGGCACACATCTAAGCCTCATCAGCTTTTACCTGCGCCATGACTGTCTGAGAGATGCGCTCACCCACATACAGAACAAGGAGTGTTCAGAGGATGTGTTTCAGGAGGGCATCTTTCAGCCTTGTCTTGAGCGTGGACGGTTGGGGGCTCTGCAGGGTCTGTTGGAAACTCTGGACCCCACACTAGAGACCTGGGGCCGTTACCTTCTTTCAGCCTGTCAGTTACTCCAGCGCAGGGGACACTACCACTCTCTGTACCAACTTCAGCAGTTCATGATGGATCACATTCGTGCTGCTATGACCTGTATCCGCTTCTTTTCTCACGGTGCTCAGTCATATCTGCAGCTGGGAGAACAACAGCGCTGGCTGATCCGAGCCAAAGAGCACCTGAGAACGTACCTGCAGGAACAACAGAGCCGCAGGAAATCACACAGCTCCtctttcaggaaaaaaatgaGCTCCGCTGATGTCTCCAGacacatacacacaattgAGCTGCAGTTGGAAGTGACACGCTTCTTACATCGCTGTGAAAGCTCACCATCCAGGACAGCTGTAGGCTCTGCCCTCACTGGGAACAGTGCTCCACCCACTCTGTTTGGAAACAGCCCCATGAAGGTGGATGTGGCCTGCAAGGTGATGCTGGGAGGCAAGAACATCGAGGAAGGTTTTGGCATTGCATATCGAGTTATACAGGACTTCCAGCTTGAGGCCCTGGCAGTGTACATACGGGTCGGACAGCGCCTTGTCCGGCAGCGTCAGTACTCATCTGTGCGGCAGCTTCTGAAGTGTGTAGGGGAGTCCGGGACAGCATCTAAACATGACTGTGACGCTATTGTGCTCAGCTGTGTTTCAGTGGCTGATAAGAGTCCAGCTGATGCTAAAGAACTAGAGGGCCTGATTCTGGAATCTAAGAGTCCAGAAAACAAGATAAAGGCATATCTTCAGTGCAGTAAGCTGCGGGCAGCGTATCTCCAGGCTGTGAAGCTTGAGCTTGTGAAGGCTGCACCATTTGTACAGGATGTGATGCGGGCCGCTGAGAGCTCTGGTGACTCTGTAATGCACGACATCTGCCGCCAGTGGCTCTCAGAGCATCAGGAACGAGCGTCACGGCAACGACAAGGCAATAACTGATAACCACTACCAGTTTCTGTTGTGATCTCTAATCCATGTTGCTCAGTGAAGGATTCTGCTATGGTTTGATTTGCTGGAGTGATATTACATGCAGGAAATGAATCACCATTGTGCCGCTTTTGTTACATCGTGTCTATTCACAATCTGTCTGAAGTTGGGATCAGTCCAACTATCAAACCTCATCCACTAAGAATCTGATGAAGTGAGAAAAAGGCCTCTCGATCTACTGGTCtccatcagaaaaaaaaattcacatctCTGTTTTTTAGTATTTGACAGAGCTTTCCTCTTACCTCAGGAAAAGGGATTTTTCTTCTAATCACTGTGACTAAATGTCCTCCTGATGGAACAAGGTCATATGGTAGTGAAGTTCTGTCTGCCATTAAATTAATTCTTATCTGAGTTCATGGCAAGTTTGCAATGGTGCCACTATAAATTAAGTGTCGCATCAGTTTATTTTGGTCTTCGGTGAGAGATTGCAATCAGATGTGGTTGGActacaaaatgtattgttaaaagggAGGATGCGATTTACAGGCATTAGGACGAGGGAGTGCTGAGAACAAATATATGCAGTGACTTAGATACTGCGTAACTCTAAACTAACAGTTACAATTGGAAAGTAAGGGATTCTGAGTATACCGTTGCGATTTTTGAAATATACTGTATCAGTGAAATGTTGTTTACGTGTTTGTCTATAACACAGTTCTACAGTTAATGCCCTGAAATGATGTGCACTCTTTATGAATGTGTATGAGagggtgtgtgtatatatttacagtgtgtTAATCAGATTAAACTGTCTCTGACCCTCCTGTAATGTTTCATATTGTaaactctgtgaatgtgtgtaagtTTTATTGTGTAACGGTAATCACAGTTTAAAAAGGAGAGGTGCTTCCTGCTTTTTAGGTATACTGTAAAGGgctatttcacccaaaaatgaaaattgtcatttactGATGtacatgttattccaaacctgtatgactttaatCTTATGTTCTACAGACAAAAGCAAGTCAtacatgtttggaatgacatgacgttcagtaaatgacagaataaacatttttaggtGGACAATTCCTTTAAGgagctgtgtttgtttacaaGGCCTATGCATGTACTAAAATCAATGAGACTGTTACAGCAGTGTTGCCAAAGAAATTGATATACCTGTGTCTGAATCCAATTAGAGTCACAAACAGATGTCTCTTAAAGGgtgatattaaaattattaaaatagaaaataaaagttattaaaatataattatctaTACAAAACAATACTTCAATCTAACAATGAAttatctatttcttttttttattttgaataatttttaaataattgttttaataacgattgtgtatttgtatattttagcaaataaagaaagaaaggaaaatacagaaattattctttttttttttttactgtatttatttaaatattcatctcTGGTCATGTATGTACCACAGTAGTTAAAAGCACATCTGTATAAAAGACTTCAAATATGCAGCTTCATGTGACAATACTGAGATGGGAGTTAAAGCAGCGTTCAAAatacaaacagaataaaacagtGAATTTAAAATTCTTCACAGATTTGTTCTAGAGTCAAAAGAAACTAATGCATGTCACAAGGGCATGATAGAAGAAAACTGTCAGAAAGAACAAGGTTGGTTGTGCTAGCATGAAATTGAGAAAATGTACACAAGTGTATTAAAACCAAATAAGACAAAAGAAGTCTAATTACTGAAAATATGGAAGGGTGGaaaaaaaacgagaaaaaaGCAGGTCAAATTAATGTTTCAGTCCCACTCAATCCCAAGTAATTCACAGCTTACATCCCACAGTTTCCGTGCCGTTTCCTCATTACGTCCCTGAGGAGCCACGAAAGCAGGGGCACAATCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138098 lncRNA downstream 13175 12278454 ~ 12285054 (-) True vti1b
TU138100 lncRNA downstream 13175 12278567 ~ 12285054 (-) False vti1b
TU138102 lncRNA downstream 13175 12278567 ~ 12285054 (-) False vti1b
TU138073 lncRNA downstream 51289 12121940 ~ 12246940 (-) False LOC122357111
XR_006252425.1 lncRNA downstream 118010 12151847 ~ 12180219 (-) False LOC122357111
XR_006252392.1 lncRNA upstream 78970 12401671 ~ 12406892 (-) False LOC122356854
TU138139 lncRNA upstream 78977 12401678 ~ 12406933 (-) True LOC122356854
TU138169 lncRNA upstream 106521 12429222 ~ 12430686 (-) False tmem234
TU138170 lncRNA upstream 106521 12429222 ~ 12430686 (-) True tmem234
TU138211 lncRNA upstream 209280 12531981 ~ 12533886 (-) True G93392
XM_043254991.1 mRNA downstream 4635 12284364 ~ 12293594 (-) False vti1b
XM_043254987.1 mRNA downstream 21011 12266018 ~ 12277218 (-) True rbm25a
XM_043256003.1 mRNA downstream 32865 12262794 ~ 12265364 (-) True kcnf1b
XM_043256002.1 mRNA downstream 32866 12262794 ~ 12265363 (-) False kcnf1b
XM_043256007.1 mRNA downstream 62146 12219957 ~ 12236083 (-) True c13h2orf50
XM_043254531.1 mRNA upstream 5079 12327780 ~ 12331334 (-) True plek2
XM_043256404.1 mRNA upstream 10469 12333170 ~ 12341776 (-) True LOC122357133
XM_043256403.1 mRNA upstream 19212 12341913 ~ 12351526 (-) True fbln5
XM_043256402.1 mRNA upstream 31996 12354697 ~ 12372991 (-) True trip11
XM_043256218.1 mRNA upstream 50905 12373606 ~ 12379217 (-) False golga5
XR_006252352.1 other downstream 499197 11771428 ~ 11799032 (-) False utp25
XR_006252349.1 other downstream 766920 11526180 ~ 11531309 (-) False zdhhc16a
XR_006252282.1 other downstream 1079244 11200946 ~ 11218985 (-) False rassf4a
TU137394 other downstream 1362898 10924944 ~ 10935331 (-) True G92819
TU136940 other downstream 2107719 10185761 ~ 10190510 (-) False LOC122356841
XR_006252291.1 other upstream 106496 12429197 ~ 12430778 (-) False tmem234
TU138208 other upstream 234376 12557077 ~ 12597302 (-) True LOC122356414
TU138426 other upstream 1241721 13564422 ~ 13567925 (-) False srd5a2b
TU138887 other upstream 1373371 13696072 ~ 13696792 (-) False map3k4
TU138915 other upstream 1587638 13910339 ~ 13911837 (-) True G93875

Expression Profile