RNA id: XM_043255041.1


Basic Information

Item Value
RNA id XM_043255041.1
length 5059
RNA type mRNA
GC content 0.48
exon number 29
gene id rrbp1a
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 12560158 ~ 12575184 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACTGACCGGCGTAATGCCAGCGCGAGAAAGTGCCACGACTCCACACAGACATCGACTGACTCCTCAAGCTGgggataatatttttttggttttttttgttttgttttttttgggctGGAGTGGTAAGGCAGTTGGATTCCAGATAATCACTTCTCTTTAAACTCTTCCTGAAGTGATTCATCCAACGGAAATCTGCCGCGAGAAAAGaacgGAAACAAGCAGTGATGGATATCTACGATCCGCAGACTCTAGGAATTGTGGTGTTTGGTGGCTTCATGGTGTTCTCAGCCATTGGTATTGCTCTGGTCTCAACATTTTCCATGAAGGAGACCTCTTATGAAGAAGCTATAGCCAAACAGCGGAAGGAGCAGGGGAAGACCCTATCTAGCCAACGTTCAGACAAGAAGAAAAAGGACAAGGCAGCTGAGAAGAAAAATCGTGCTAAGAAAAAGGAAGATAAGCCCAATGGGAAGCTCCTggagtcagaggctacccctgAGGTTACAGAAGTGTCAGCTGAGCCCAGTCCTCTAACTCCTCCAGACCCGGAACAGGTTTCTACACCAGAACCTAAACAAGAGGCCCCAGCTCAGAAGTCTCCTCAACCCACCGTTTCCCAAAAGCCCACTCCACCTGCCCTGGCTCAGAAATCAGCTTCAACTGTCTCAGCCCAAAAATCTGCTGTACCTATCCAAAAGTCTACTACTGTGCCTCCTGCCCAGAAATCTTCTCCAACTCCCTCTGCCCAGAAATCTGCTTCACCTCCTTCTACCCAGAAATCTTCACCGGCCACAGCCCAGAAGTCTGCTTCAAATGCCCAGAAAGCAGCTCCACCTGCCCCAGACCAGAAAGTCACTCCACCGGCCCCTGCACAAAAATCTGCTCAAACTCAAAAGGCTTCTCCAACTGCCCCAACACAAAAATCCTCTCAACCTGCCCCATCCCCAAAGGCTGGTCAAACTGCCCCAACACAGAAATCCTCTCAGCCTGCCCAAACCCAAAAGTCTGCTTCAAATGCCCAGACCCAGAAATCTTCTCAGCCTGCCCAAACCCAAAAGGATATTCCAACTGCCCCAACACAGAAATCTTCTCAGCCTGCCCAAACCCAAAAGGATATTCCATCTGCCCCAACACAGAAATCCTCTCAGCCTGCCCAAACCCAAAAGGATATTCCATCTGCCCCAACACAGAAATCCTCTCAGCCTGCCCAAACCCAAAAGTCTGCTTCAAATGCCCCGACCCAGAAATCTTCTCAGCCTGCCCAAACCCAAAAGTCTGCTTCAAATGCCCCGACCCAGAAATCTTCTCAGCCTGCCCAAACCCAAAAGTCTGCTTCAAATGCCCCGACCCAGAAATCTTCTCAGCCTGCCCAAACCCAAAAGTCTGCTTCAAATGCCCCGACCCAGAAATCTTCTCAGCCTGCCCAAACACAAAAGTCTGCTTCAAATGCCCCAACACAGAAATCTTCTCAGCCTGCCCAAACACAAAAGTCTGCTTCAAATGCCCCAACAGAGAAATCTTCTCAGCCTGCCCAAACACAAAAGTCTGCTTCAAATGCACCGACCCAGAAATCTTCTCAGCCTGCCCAAACCCAAAAGTCTGCTTCAAATGCACCGACCCAGAAATCTTCTCAGCCTGCCCAAACCCAAAAGTCTGCTTCAAATGCACCGACCCAGAAATCTTCTCAGCCTGCCCAAACCCAAAAGTCTGCTTCGAATGCCCCGACCCAGAAAGCTGCCTCACTTGTCCCAGCCCAGAAAGTCACTCCACCAGCCCCAGTGCAGAAATCCTCTCCGCCCGACCAAAAACCCAGTCCACCTGCCCCGACCCCTTCCCAAAAAGCTTCTGTAGGTCCTACCCCTTCTGCATCCCTTCCTTCTCCTGAAAATGCTCCACCTGCCCCATCTCCTAAggaaaagaggaagaagaaagccAAAACAGAGAATGTTTCCCCTGAGATTCAGCCCAAACCTGTCGCTCCATTGGAGATGGTGACCAAAAAGGTTCCTATCATGGCAGTGCCTCCAGTGGGTACTCCAAAAGCTGCTGAGTTGGCCAAAGCAGAAGAACCCAAACAGGATGCTCCAGCTAAGAAGAAAGGAGGATCCAAAAAGAAGTCAGAGCCAGCGGTGGCTGCAGACCCCGCAGACAGTCCACTGTACCTTCCCTACAAGGCTCTGCTTTCCACAGTGAGGAGTATGGTGTTCACTGACGGAGAGGCCCAGCAGCTCATTGAGATTTTGTCTGATAAGGCTGGCATTATTCAGGACACATGGCATAAGGCCACACAGAAGGGTGACCCGGTAGTTGTGCTGAAGAAACAGCTGGAAGAACGAGACAAGCAGCTGGCAGCTGAGCAGGAGGACTCAGCAGCTGTTAAAGGCAAACTGAGGGATTTGACTAAAgaCCTGTCTGTGGAGAAGTCAAAGGTGGCATCTGTAGAGACCAGATTGAGCTCTCAGCTGAGTAAACGAGAGCAGGACATTATCGCCCTGCAAGCTCGCATGCAGGCCAGTTATCAAGACCACCTTGCGGAGACTCAGCAGCTTAATGCCAAAGTCTTGGCTCTCCAGGACCAGCTGGAGAAAGGCCCCAATGCTCAGCTGGCCCGTCTACAGCAGGAGAACTCTATCCTCAGAGATGCACTTAACCAAGCCACCAGTCAGACGGAGAGCAAGCAAAATGCTGAATTGGCCAAACTGCGTCAGGACTGCATTCGACTGAATAAGGAACTGGTGGAGAAGAATGAGACCTTGCAGGCCGACGAACAGCTCAggaaaaatctggaatctaaaGCGGCCATGGCTGAGAAACAAGTGACCCAGCTGCAGGCTAATCGTGTGAGCAGTGAACAGGCCCTGCAGAAGCATCTAGAAGAAGTGAGCGAGGAGCTCAGACAGACCCAGAGCAGCAGAAACAACCTTCAGGCACAGCTTGAACAAGCTCAGAAAGATGCCACTGCTCTAGCAGAGGCTCAAGCTTGTGTGGTCAATATGGAGGCAGAAATGAAAGAGCGGACCGGACAGTTGGAGAGTCTGCAGAGCCAGCTGAAACTGATGGAGGCTAGTCAGAACAAAGAACAGAACCACAATTCAGAGGCTTTGGCTGAACTGGAGCAAGCAAAGATCAGCCTGAAGGAGAAAGAAGAGGAACTGATCCAACTCAAAAACAGCATTGCCAGTCAGGTGGATAACACAACAACGCTACAACAGTTGCAGCACAGCATTAAAGAAAAGGATGACCAAATATCAACTCTTCAGGGAGAGCTCCAACAGGTTAAAGAAAACAATTCAGACCTCACCAGACTTGGAAACACAGAAATGCTGGAACAGCTTCAAAACAGcttaaaagaaaaagagtctCAGGtgactttatttaaagaagaGATGAAGCAGTGTAAAGAACAGTATGACACTATTCTGGCAGACAGCACAGCAAAGCTGGAGTCACTGCATAAAAGcGTTACTGAAAAAGAGAGCCAAGTGACATCACTACAACAGGAAGCGCAGCAGCTCAAGGAACTAAATCAGTCACAAGGCAAGAGTTACGAGACTTTGGAGGACATGCTGAAATCTGTCCAGGCTGAGACCAAAGAAGTTCTTCATTCTCTTTTCCCACACATCAACATAGAGACAGCGCAGACCAATTGGCTGCAAGACTTTGCTGTGGAAGCAAAAGAGGTGCTAAATCAAAAGCAACAGACCCAAGAATCCCAGCAAAGCGCAGAGATGGTGGAGATAATGGGGAAACTTCAGGCAGCCCAGGAGAGTCAGTGCACATTACAGTCTGAATGTGACCAGTACAGGAGCGTACTGGCTGAGACGGAGGGGATGCTGAAAACACTTCAGAAAAGtgtagaggaggaggagagagtgTGGAAGACTCAGATAATGGAGTCAGAGGAGAAACTGAGAATGGCACTTAACAAGGTGCAGGCGTTAGAAGAGACAACAGAGAACTTGAGAGAGGAGAACCAGAGAACCCAAAAGCTGGAGGACAAGGTGGTGTTGCTCGAGGGCCAACTGGAGAAACAGCTCCAGTCAGTGTCCACTGACAGCCAGAGTCAATCTGAAGAGATAAAAAACttgaagCACGTTTTGGCAGAATCAGAAAGACAGCTGAGTGCGGCCCAGAAGGAGATACAGACACAGAGGGAGGAGCTTTCACAGGTCAGGCAGAGTGACGTGACAAAGCGAGCTCAGGGAGTGGCAGAGAACGGGCAGCCTGAGGCGGAGGAGTGTCAGGTCCAGGCTCAGCTGGAGCAGACGTTGGAAAAACTGCAAGGTGAACAGGCTCTAAACCAGCAGCTCTCTGCAGAAGTGGAGCAGGCTCAGGAAGCACTTAAAAAACACCTTCAGATCCATCTAGAACAGATGAGGTCAGCTGAAGATGCTGCAGCCATGGAGGATGTTGTTCAGCTGAAgGAGTGTCTAGAAAAGGAGCGAAAGATGACCAAAGATTTGGGCCAGGCAGCCACCAAACTCCAACAACTGCTAAGAAACAGTCAGGACCAACTttccaaagagaaagagaaagtcaGGACCCTGCAGGATCAACTGCAAGACAAGgagGGTGATGGAGAGCTGAAGCAAGGCACTTCTGTTTGAGgggtaaaacaaaacaaattgccAAAAATTGCCTTAAGATGACCAAAATGAAGCATCCTGAAATTTTTCTTCCCTTTGTTTGTTGTACTATAGTCTTGGGAGAAATTGTTAGAAAACTTTGAGAAATCTAACTCATGCAAGCATTTTATTTCGGAGATGTGCTGGAACTATTTTCACATTCCATCTGAAACCTTCTGGCTATGTCAGAAAATATTCCTCAATTATATATGAGGAATATATATTTGCCTTATATATATGTTCTTAGTGTTCCCGCACCTCTCCTCCTGATGTCAGTGTTAAAAGGGAAACCGCTAACTAGTGCAATTAATTTCCTGTAAGTGAATGAGTATGCATAATTGTATTGGTACATGGGTAAAGCATTTGGAATGCTCTCTCTGTAGCTGGCTTCAAGACCATTGTAGTAAGTtcgataataaataataaatggcaa

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0030176 integral component of endoplasmic reticulum membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138213 lncRNA downstream 25090 12533986 ~ 12535068 (-) True G93394
TU138211 lncRNA downstream 26272 12531981 ~ 12533886 (-) True G93392
TU138169 lncRNA downstream 129472 12429222 ~ 12430686 (-) False tmem234
TU138170 lncRNA downstream 129472 12429222 ~ 12430686 (-) True tmem234
TU138139 lncRNA downstream 153225 12401678 ~ 12406933 (-) True LOC122356854
TU138291 lncRNA upstream 529896 13105079 ~ 13105684 (-) True G93460
TU138302 lncRNA upstream 581747 13156930 ~ 13158437 (-) True G93470
TU138314 lncRNA upstream 586962 13162145 ~ 13162370 (-) True G93471
TU138315 lncRNA upstream 587306 13162489 ~ 13162727 (-) True G93472
TU138359 lncRNA upstream 633227 13208410 ~ 13224516 (-) False LOC122356418
XM_043255846.1 mRNA downstream 98179 12457871 ~ 12461979 (-) False btbd6a
XM_043255845.1 mRNA downstream 99158 12457871 ~ 12461000 (-) True btbd6a
XM_043254541.1 mRNA downstream 115280 12441039 ~ 12444878 (-) True LOC122356084
XM_043254688.1 mRNA downstream 129380 12429197 ~ 12430778 (-) False tmem234
XM_043255917.1 mRNA downstream 160630 12395781 ~ 12399528 (-) True nusap1
XM_043255073.1 mRNA upstream 4965 12580148 ~ 12586465 (-) True snx5
XM_043255088.1 mRNA upstream 13761 12588944 ~ 12591353 (-) True si:dkey-76k16.6
XM_043255087.1 mRNA upstream 16770 12591953 ~ 12594130 (-) True si:dkey-76k16.5
XM_043255092.1 mRNA upstream 20743 12595926 ~ 12597290 (-) False LOC122356414
XM_043255072.1 mRNA upstream 34989 12610172 ~ 12612682 (-) True LOC122356399
XR_006252291.1 other downstream 129380 12429197 ~ 12430778 (-) False tmem234
XR_006252352.1 other downstream 761126 11771428 ~ 11799032 (-) False utp25
XR_006252349.1 other downstream 1028849 11526180 ~ 11531309 (-) False zdhhc16a
XR_006252282.1 other downstream 1341173 11200946 ~ 11218985 (-) False rassf4a
TU137394 other downstream 1624827 10924944 ~ 10935331 (-) True G92819
TU138426 other upstream 989239 13564422 ~ 13567925 (-) False srd5a2b
TU138887 other upstream 1120889 13696072 ~ 13696792 (-) False map3k4
TU138915 other upstream 1335156 13910339 ~ 13911837 (-) True G93875
TU138946 other upstream 1504349 14079532 ~ 14082758 (-) True LOC122356235
TU138948 other upstream 1585140 14160323 ~ 14164348 (-) True srsf5a

Expression Profile