RNA id: XM_043255047.1


Basic Information

Item Value
RNA id XM_043255047.1
length 4171
RNA type mRNA
GC content 0.51
exon number 26
gene id jag1b
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 13493819 ~ 13521130 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCAGTCAGTCAGTCGCGGACAAACGCTCTCATGGCTTCTGTGTAATGTATACCCGCcgctgagagagagaagaagaataAGAAAGATAAGAATTGCAGATACGCTGGGATAATAGGAGGCAGTTTTCTACACATTGGAAAATAGTCttctgaaagaaataaagttgTTCTCCACCCGTGCATGTTAAATCGGGGAGTACATTAGAGCCGTGAGGCGGCTAGAACTTCTGAGTCTCAAAGCAACACCAACAAGAAGGCATGATTGTGCGACGGAGTTCAGTATTTTCTGCTTTCTACCTTCATGCCTTTTTGTTATGCTTGCCGACGAAGGTGTCTGACGCATCGGGGCACTTCGAGCTGGAAATCGTATCGATGCAGAATGCGAAAGGCGAACTGCAGAACGGCTCGTGCTGCGACGGCGAGAGGAACCCGGCGGATCGCAAATGCACGCGGGACGAATGTGatacatattttaaagtttgtCTGAAGGAATATCAATCGCGAGTTTCCGCTGCTGGGGCTTGCAGTTTCGGAACTGGATCTACGCCCGTTCTCGGTGGGAATAAATTTTCGACCAAGGGAACGCGGAGTGAAAAGTCAAGGATTGTTTTACCCTTCAGTTTTGCGTGGCCGcgGTCCTACACGTTGATAGTGGAGGCCTTGGACTTCAATAACGATACCGCCAGCGAAAGTGGAAAGCTCATTGAGAAAGCGTACCACTCTGGCATGATCAACCCAAATCGACAATGGCAGAGACTGACCCACAACGGCCCCATCGCTCAGTTCGAGTACCAGATCCGGGTCACCTGCGATGAACACTACTACGGCTTTGGCTGCAACAAGTTTTGCCGGCCACGTGACGAGTTCTTTGGACATTACACCTGTGACCAGAATGGCAACAAGACCTGCCTGGAAGGATGGACGGGTCCTGACTGCAATACGGCAATCTGCAGACAAGGTTGCAGCACCGAACATGGATCTTGTAAACAACCAGGTGGCTGCAAGTGTCTTTACGGCTGGCAGGGTCCATATTGTGATAAGTGCATCCCTCATCCGGGCTGTGTACACGGAACCTGCGTTGAACCCTGGCAGTGCCTCTGTGACACTAACTGGGGTGGACAACTCTGTGACAAAgATCTAAACTACTGTGGAACTCACCAGCCGTGTCTGAATGGAGGAACGTGCAGCAATACAGGGCCTGACAAATACCAGTGCTCTTGTGAAGATGGCTACTCTGGGGTCAACTGTGAACGAGCTGAACATGCCTGTCTGTCCAACCCTTGTGCGAATGGAGGTACGTGCAAGGAGACCAGTCAGGGTTACGAGTGTCACTGTGCAGTCGGCTGGAGCGGCCCATCGTGCGAAATCAATGTGGATGATTGTACACCCAACCCATGCAAACATGGAGGCACCTGTCAGGATTTGGTAAATGGCTTCAAATGTACCTGCCCTCCTCACTGGACCGGCAAAATGTGTCTGATTGaTGCCAATGAATGTGAGGACAAGCCATGTGTGAATGCCAAGTCATGCCACAATCTGATTGGTGGATATTTCTGCGAGTGTCTCCCTGGTTGGACGGGTCAGAATTGTGATATAAacatAAATGACTGCCAGGGACAATGTCTGAATGGAGGAACTTGCAAGGATTTGGTGAATGGTTACCGCTGTCTTTGCCCTCCTGGCTATTCGGGAGAACACTGTGACAAGGATGTGGATGAGTGTGCTAGCAGTCCCTGCCTGAACGGTGGCCGGTGTCAGGATGAAGTCAATGGATTTCAGTGTCTGTGTCCTGCTGGCTTTTCAGGTCAGCTGTGTCAGTTGGATATCGATTACTGCCAGCCCAACCCATGTCAGAACGGCGCGCAGTGTTTCAACCTGGCCTCGGACTACTTCTGCAAATGCCCCGATGACTACGAGGGTAAAAACTGCTCTCACCTGAAGGACCATTGTCGAACCACATCATGCCAAGTGATTGACAGCTGCACTGTTGCTGTGGCATCCAACAGTACGCCGGAAGGGGTGCGATATATCTCCTCAAACGTCTGTGGTCCTCACGGACGCTGCAGGAGTCAGGCTGGAGGCCAGTTTACGTGCGAGTGTCAGGAAGGATTCAGAGGCACCTACTGCCATGAGAATATAAACGACTGTGAGAGTAACCCATGTCGCAATGGCGGTACTTGCATCGATAAGGTGAACGTTTATCAGTGCATTTGTGCTGACGGCTGGGAAGGAGGTCACTGCGAAATCaACATTGATGACTGCGGCTTGAACCCCTGTCTGAACAAGGGAGCATGTCAAGACCTGGTGAACGATTTCTACTGCGAATGTAGAAATGGCTGGAAGGGAAAAACCTGCCACTCCCGTGATAGTCAATGTGACGAAGCCACATGCAATAATGGAGGTACATGTCATGATGAAGGGGACATATTCAAATGCAGGTGCTCACCTGGCTGGGAAGGAGCCACGTGTAACATAGCCAAGAACAGCAGCTGTCTGCCCAACCCATGTGAGAACGGAGGCACCTGTGTGGTCAACGGCGACTCCTTCACCTGCGTCTGCAAGGAAGGCTGGGAAGGATCCACCTGCACGGAGAataCCAACGACTGCAACCCACACCCATGCTACAACAGCGGGACGTGTGTGGATGGTGAAAACTGGTACCGTTGCGAGTGCGCTCCGGGTTTCGCCGGGCCAGACTGCCGCATAAATATAAACGAGTGTCAGTCTTCTCCCTGCGCAATTGGCTCTACCTGCGTAGACGAAATCAATGGTTATCGTTGCCTTTGTCCACCTGGAAGAACAGGACTAGAGTGTCAAGAAGTCATTGGGAGACCCTGTATTGCTAACGGACAAGTAACTGCGGATGGTGCTAAATGGGAGGAAGAATGCAACATTTGCCAGTGTCAAAATGGAAAGATTCATTGCACCATGATGTGGTGTGGACCGAAATCATGTCGGGCAGGAAAGGCCAGAAATGGGTGTCCTGCAGGTCAATCCTGTGTTCCCATCAAAGAAGAGCACTGCTTTGTCAAACCCTGTCCTAGTCTGGGAGAGTGTTGGCCCCCTGCACCCCCTCCACCCTCCAAATGCCACGCCAGCTTCTCTTACCAGGACGACAGCTGTGCCAACATCACGTTCACCTTTAACAAGGAGAACATGCCTCAAGGCCTGAGTGTGGAACATGTTTGTAATGAGCTGAGGCACTGGTACCTGCTGAAGAACCTCACGGCAGAGTACGCTGTGTCCATCACCTGTGAGCCATCTTCTTCAGCCAGCAATGAGATTCACGTCAGCATTTCCACAGAAGAGCCCAGGTTGGACAGGAATCCTATTAAAGACATTACGAGTCAAATATTTGACTTGGTGAGCAAGCACAATGGTAACAGCACCATCATCAAAGCCATCACCGGCGTACGAGTTCACCAGACACCAAGCCCCGAAACTGGCTACTTGGTTCCTCTGCTCAGCTCCATCTTCATCGTGCTCTGGATCCTCGCCCTGGCCTCGGCCTTCCTGTGGTGCATTCACCGCCGCCGGAAACAGAACACTCACAGCAACGCAACTACCTCAGCTACAGAGGACAATACCACCAATAACGTGCGTGAGCAGCTCAACCAAATCAAGAACCCCATCGAGAAACACTCGGCCCACGGCGTGGCCATAAAAGACTACGAGGGAAAGAACTCCATCATTGCCAAAATTAGGACGCATAACTCCGaggtggaggaagaggagatggACAAACACCTGCAGAAAGCGCGCTTCACCAAGCAGCCGGCTTACACGCTGGTGGAACGGGAGGAGCGCGCGCCCAACAAAAACCCAAATTGGACTAACAAACAGGACAACAGAGACTTAGAGACGGCACAAAGCTTAAACAGGATGGAGTATATCGTATAGCAGGCAGCTGTGTTGCCGTGCGACTGAACCCCTGTTGCACTTACCGGTCATTTGGCAGGGTCTCGGGGGGGTTGTGCTTCTTAAAACTGTTGCGTCGTGTTCTGGACTCCAAGGCCGTTATTTGCCTAGAATCCTGTGTTAATTTAAGTTTTGACAAGCTGGCTTCACACTGGCAATTGTAAAAGTTGCTGTGGACGGCTGGAAAACCCAAATGCTGCGTTTCGCATCCAGTGTTTTCcttcgtaaaaaaaaataaaaataaaaattgttt

Function

GO:

id name namespace
GO:0060351 cartilage development involved in endochondral bone morphogenesis biological_process
GO:0048752 semicircular canal morphogenesis biological_process
GO:0007219 Notch signaling pathway biological_process
GO:0060117 auditory receptor cell development biological_process
GO:0031016 pancreas development biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0032474 otolith morphogenesis biological_process
GO:0001889 liver development biological_process
GO:0030878 thyroid gland development biological_process
GO:0060325 face morphogenesis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005112 Notch binding molecular_function
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K06052 JAG1, CD339; jagged-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138376 lncRNA upstream 145781 13346861 ~ 13348038 (+) True G93512
TU138346 lncRNA upstream 302024 13187585 ~ 13191795 (+) True G93485
TU138317 lncRNA upstream 329506 13164037 ~ 13164313 (+) True G93474
TU138293 lncRNA upstream 335381 13156930 ~ 13158438 (+) False tasp1
TU138058 lncRNA upstream 891278 12602191 ~ 12602541 (+) True G93306
TU138576 lncRNA downstream 238426 13759556 ~ 13760734 (+) False LOC122356417
TU138574 lncRNA downstream 239922 13761052 ~ 13930287 (+) True G93643
TU138585 lncRNA downstream 340921 13862051 ~ 13862660 (+) True G93649
TU138606 lncRNA downstream 424200 13945330 ~ 13950605 (+) True G93659
TU138607 lncRNA downstream 424200 13945330 ~ 13950605 (+) False G93659
XM_043255071.1 mRNA upstream 335379 13134473 ~ 13158440 (+) True tasp1
XM_043255070.1 mRNA upstream 419320 12613777 ~ 13074499 (+) False macrod2
XM_043255069.1 mRNA upstream 419320 12613778 ~ 13074499 (+) True macrod2
XM_043255067.1 mRNA upstream 883782 12605843 ~ 12610037 (+) True ephx5
XM_043255083.1 mRNA upstream 904821 12586887 ~ 12588998 (+) True mgme1
XM_043255055.1 mRNA downstream 37963 13559093 ~ 13563325 (+) True mkks
XM_043255057.1 mRNA downstream 37963 13559093 ~ 13563325 (+) False mkks
XM_043255054.1 mRNA downstream 37963 13559093 ~ 13563325 (+) False mkks
XM_043255058.1 mRNA downstream 38064 13559194 ~ 13563325 (+) False mkks
XM_043255053.1 mRNA downstream 38070 13559200 ~ 13563325 (+) False mkks
XR_006252431.1 other upstream 277062 13216658 ~ 13216757 (+) True LOC122357146
XR_006252318.1 other upstream 904966 12586886 ~ 12588853 (+) False mgme1
TU138047 other upstream 918607 12571631 ~ 12575212 (+) True G93296
TU137630 other upstream 1888967 11603697 ~ 11604852 (+) True G92977
TU137635 other upstream 1889595 11603697 ~ 11604224 (+) False G92977
TU138522 other downstream 218477 13739607 ~ 13909603 (+) True G93613
XR_006252357.1 other downstream 832986 14354116 ~ 14367135 (+) False frmd6
XR_006252421.1 other downstream 1585328 15106458 ~ 15226183 (+) True LOC122357077
XR_006252370.1 other downstream 1733944 15255074 ~ 15275234 (+) False fam135a
XR_006252400.1 other downstream 1774719 15295849 ~ 15314279 (+) False tarbp1

Expression Profile