RNA id: XM_043255048.1


Basic Information

Item Value
RNA id XM_043255048.1
length 4940
RNA type mRNA
GC content 0.46
exon number 22
gene id thbs2a
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 13626598 ~ 13645581 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCGGCATGACATTGTAGGATGGGAATCGTATAATTGCAGCCCCCTCGGCAGGTCCAGGTTTATATCCGATCCTGACTGACATGATTCGGACCGAACCGTATAAAGGGCATCAGTCCAGTAGTTCTCAGGCCACTGAACTGAAACCCGGAGCCGTGTGGATGTTATAGGCACTGTGGATTTCAGTATTTGTCCagaagacctttttttttctcaacatttttttaaagtcttgTAGGACATATAGACCTTGCGCTGTTTCAGTTGGATTGCATATTACAACAGgagCATGATACTCAGGAGAAATTTCTACTTGCTGCCTTTGCTGTTATTAAGCATCAGAGCACTACCTCAAGATGGCCATGTGGAAGATGAATCCATCTTCGACCTTTTCAAAATCAGCAGCATCAGCAGAAAGACGATTGGGGCCAAGCTCTTCAAGGGCCACGACTGGGACTCGCCTGCATACCGCTTCATCCGCTTTGATCACATCCCTGCTGTGAGCACCCCGGCCCTCCATCAGATCCTAAAGCAGGTCCAGAACAATGAGGGCTTTGTGTTTGTGGCCACCATACGACAGGACAAGGGCTCCAGAGGAACCCTGATCGGTCTGGAGGGCCCTAGCGGGAGCCGTCAGTTTGAGGTTGTGTCCAATGGGCGAGCCAACACGTTGGATCTGGTCTACATGGTCGAGGGATCTCAGAATGTAGTGTCCTTTGAGGATGTGGACTTGTCTGATTCGCAGTGGAAGAACATTACGCTGTACATTCACGGAGAGAACGCTCACCTGTACATAGGCTGTAGCCTCATTGACAGCGTGATCCTGGATGAGCCTTTCTATGAGCATCTGCGGCTGGAGGGCGTTCAGATGTTTGTGGCCAAGGGATCTATCAGGGAAAACCACTTCAGGGGTTTACTACAGAATGTACAGTTCCTTTTTGACACACCAATAGAGAACATCTTAAGAAACAAAGGTTGTGTGATCACCAAAGCTGAGGAAGTTAACGTGGTTAATGAAAGTacagagactgtgtctgttggTACGGCCATCTCCACCAACTTCATTGGGCAGAAGGAGAAAATGGCATCGGATGTGTGCGAGCGTTCCTGTGAGGAAATCACCAACATGGTCCAGGAGCTCAAAGGTCTCCGTCTTATAGTGGGCAATCTCATCGATGGCTTGCAGAAAGtgACTGAAGAGAACACTGTGATGAAGGAGGTGCTGGGGAACATGAAGAACATCAAAGACAAGCGCATGTGCTGGCAAGACGGCCGTCTCTTTGAGGATAAGGAGGATTGGGTTGTGGACAGCTGCACCAAGTGTACCTGTCAGGAATCAAAGATTGTATGCCATCAGATCACATGTCCTCCTGTATCCTGTGCCAGCCCCACTTTCCTAGATGGTGAATGCTGTCCGGTGTGTCTGCCTAAAGACAGTGAGGACGGCTGGTCGCCTTGGTCTGAGTGGACGGAGTGTACCGTTACATGTGGAACAGGCACCCAGCAAAGAGGCAGGTCGTGTGATGCCACAAGTAACCCCTGCAGTGGTCCCTCCATCCAAACCCGCAGATGCAACTTGGGAAAATGCGACAGTCGTGTGCGTCAAGATGGTGGTTGGAGTTTGTGGTCCCCCTGGTCGTCATGCTCTGTGACATGTGGAGAGGGACAGATCACGCGAATTCGCCACTGTAACTCCCCTGTTCCTCAGCTGGGAGGAAAGGACTGTGAGGGCAGCGGGAGAGAAACGAAAAAATGTGAAGCCAAACCCTGTCCGATTGATGGAGCCTGGGGCCCATGGTCTCCTTGGGCGATCTGCTCCACCACCTGTGGGGGAGGAACAAGGACGCGAACACGTGTGTGTAACAGCCCTCGTCCACAGTATGGTGGCAAGAAATGCCCTGGGGAATCCAAGGACACTGACTCCTGCAACAAACAGGACTGTCCTGTTGATGGTTGTCTATCTAACCCGTGCTTCGGGGGTGTTGACTGCACCAGCTCCGCTGACGGCTCGTGGGAGTGCGGGCCCTGCCCTGTCGGTTTCCGTGGCAATGGAACATTCTGTGAGGATGTAAATGAGTGTGACATGGTGCCTGATCTTTGCTTTAAAAGCAGTGAATCCCAGCGCTGTGTCAACACAGACCCAGGATTCCACTGCTTGCCTTGCCCTCCTCGATACAAAGGCAATCAGCCCTTTGGAATGGGAGTGGAGGCTGCCAAGCTAAATAAACAGGTATGCGAGCAAGAAAACCCCTGTAAAGACAAGACTCATAACTGCCACAGGTCTGCTGAGTGTATCTACCTTGGCCACTTCACTGACCCCATGTTTAAATGCGAGTGTAAGATCGGCTATGCTGGGGACGGCCTTATCTGCGGCGAGGACACTGACCTTGATGGCTGGCCCAATCAGAATCTGGTGTGTGGAGCCAATCAATCATACCATTGCAAAAAGGACAACTGTCCCAACCTTCCAAATTCAGGCCAAGAAGATTTGGATAAAGACGGTCAAGGAGACGCTTGTGACAAAGACGATGATAATGATGGAATAATGGATGAGGGGGACAACTGTCCTCTACTGTACAATCCAAGGCAATTCGACTACGATAAAGACCTAGTAGGTGACCGTTGTGACAACTGTCCATATGAGCACAACCCAGCTCAGATCGACACAGACGGTAATGGCGAGGGAGATGCCTGCTCTGTAGACATTGATGGAGATGAGGTTCTGAATGAGCTTGATAACTGCCCCTACGTGTACAATACTGACCAGAAGGACACAGATCAGGATGGAGTGGGAGACCAGTGCGATAACTGTCCTCTGCTGCACAACCCTGAACAAATTGACTCCGATAATGACCGAGTCGGCGACGAGTGCGACAATAATCAGGACATTGATGAAGACGGCCACCAGAACAGCCTGGATAATTGTCCCTACATTCCTAATGCCAACCAGGCCGACCATGACAAAGATGGGAGAGGAGATGCTTGCGAttttgatgatgataatgatggaATCCCTGACGAGAAGGACAACTGCAGACTGGTGCCAAACAAAGATCAACTAGACTCTGATGGGGATGGAAGAGGCGATGCCTGCAAagatgattttgacaatgacaACATTCCAGACATTTTGGATGTGTGCCCTGAGAACGACGCCATCAGTAACACCGACTTCCGGAAGTTTCAGATGGTACATTTGGACCCCAAAGGAACCACACAAATTGATCCCAATTGGGTCGTCAGACATCAGGGCAAAGAGTTGGTTCAGACGGCCAATTCTGACCCCGGCATTGCAGTGGGTTTCGATGAGTTCAACGCTGTGGATTTCAGTGGCACTTTCTACGTCAACACCGACAGAGACGACGATTACGCTGGCTTTGTGTTTGGCTATCAGTCCAGCAGTCGATTTTATGTGGTAATGTGGAAGCAGATAACGCAGACGTACTGGGAAGTTAACCCCTCGAAAGCTTTCGGCGTGGCCGGAGTCTCTCTGAAAGTGGCCAACTCTACCACTGGCACAGGAGAGCACCTACGGAACGCCCTCTGGCACACTGGGGACACTCCTGGACAGGTCCGCACACTGTGGCACGACCCCAAGAACATCGGCTGGAAGGATTACACCGCGTACAGGTGGCATCTAATCCACAGGCCCAAGACAGGATTCATCAGAGTGGTGGTTTATGAGGGGAAACAGATCATGGCAGATTCAGGGCCAGTTTACGATAAAACCTTTGCAGGAGGGAGATTAGGACTGTTCGTGTTTTCCCAAGAACTGGTTTACTTCTCTGATCTGAAGTACGAGTGTCGAGatAACTAAGAAGAAGAAATTGCTCCTTTAAAAGACTATAGCACAACAACACATTTTCACTCTCggacaaaacacaaaagacttCGGTGGACTACAAAAAGGAAACCGGCCCCAAATCTCCTCCTGAGGAGAAAGAATTAACTTAAATTGCAAGCACATTTATGGGGATTTTTCttatcaatgtttttatgtCCTTGAGTGAGTATTTTTAGCCGAAGCTTGGGTAAcgttaattaaacattacatgtggtatttctttacaaaataacCTAGAGGAAAAGCAATCCCAAAACTTCATCCTCTGACATCTTTATCACCAAATGCTTTActtgcacaatatttttttagaagttttttCTCCTTTGGATTTGTTGTAATGAAGACATCTTTTTCTACAACCCTAGATTCTAACAGGGGCTTTGGGTTTGACCAGCATATACATGTTTTAGAGACCTTTGAGATGAAGATGTTTATATTAAGACTGTATCATAATTACttgtgtaaattatttatatgacTCTTGCAATTCAGTATCAAGTTATGTCTTTTTTTGCGCAATGCTTTCAGAACCAAGACGCTgtaaatactaatttatttgtttacactgACAAAATTTGACTATTGcagaaataaagattaaaaaagtacatttttattgctgCGCTTCTAGACATCTATAATGCAATTTCATGcctatgtcatttttttttacttgatagAATTGTTTTTTCaatgtgagtgtgttttgtttttgtcctgtgATGTTACATTTAACACAGATTTGCTGGTCTCGAACCACTTTTTCCTTTAGATTCTTATACTTTGTCTGTTTACTGAAGAAGAACACAAGACGTAATGGGACAAATAGTTCTGTTTGTATCAGAGAAACAAAGACTCGTACATGAGAGATTGTCATTCATCTTCCAGATTTTTTGAGCCTGAACATTCATCcgttttgtctttcttttgcttgttaaatgaatttattttcataaccattttttatattttgtaaaaagtgCAATGCCTTGGAATTTTTATGCCACATCCCCGGAAAACCCTGTAAAgttttcttatattgttattctcACAGTTGtcacaggttttttttctttaataaaaggtttaaaCGGA

Function

GO: NA

KEGG:

id description
K04659 THBS2S; thrombospondin 2/3/4/5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138376 lncRNA upstream 278560 13346861 ~ 13348038 (+) True G93512
TU138346 lncRNA upstream 434803 13187585 ~ 13191795 (+) True G93485
TU138317 lncRNA upstream 462285 13164037 ~ 13164313 (+) True G93474
TU138293 lncRNA upstream 468160 13156930 ~ 13158438 (+) False tasp1
TU138058 lncRNA upstream 1024057 12602191 ~ 12602541 (+) True G93306
TU138576 lncRNA downstream 113975 13759556 ~ 13760734 (+) False LOC122356417
TU138574 lncRNA downstream 115471 13761052 ~ 13930287 (+) True G93643
TU138585 lncRNA downstream 216470 13862051 ~ 13862660 (+) True G93649
TU138606 lncRNA downstream 299749 13945330 ~ 13950605 (+) True G93659
TU138607 lncRNA downstream 299749 13945330 ~ 13950605 (+) False G93659
XM_043255050.1 mRNA upstream 9325 13581226 ~ 13617273 (+) True wdr27
XM_043255055.1 mRNA upstream 63273 13559093 ~ 13563325 (+) True mkks
XM_043255038.1 mRNA downstream 5327 13650908 ~ 13675048 (+) True psme4a
XM_043255040.1 mRNA downstream 5327 13650908 ~ 13675048 (+) False psme4a
XM_043255039.1 mRNA downstream 5327 13650908 ~ 13675048 (+) False psme4a
XM_043255059.1 mRNA downstream 30186 13675767 ~ 13678632 (+) False gpr75
XM_043255060.1 mRNA downstream 30445 13676026 ~ 13678632 (+) True gpr75
XR_006252431.1 other upstream 409841 13216658 ~ 13216757 (+) True LOC122357146
XR_006252318.1 other upstream 1037745 12586886 ~ 12588853 (+) False mgme1
TU138047 other upstream 1051386 12571631 ~ 12575212 (+) True G93296
TU137630 other upstream 2021746 11603697 ~ 11604852 (+) True G92977
TU138522 other downstream 94026 13739607 ~ 13909603 (+) True G93613
XR_006252357.1 other downstream 708535 14354116 ~ 14367135 (+) False frmd6
XR_006252421.1 other downstream 1460877 15106458 ~ 15226183 (+) True LOC122357077
XR_006252370.1 other downstream 1609493 15255074 ~ 15275234 (+) False fam135a
XR_006252400.1 other downstream 1650268 15295849 ~ 15314279 (+) False tarbp1

Expression Profile