RNA id: XM_043255054.1


Basic Information

Item Value
RNA id XM_043255054.1
length 1835
RNA type mRNA
GC content 0.46
exon number 5
gene id mkks
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 13559093 ~ 13563325 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGACGTGAACACAATCTGTTTTGCTTTTACCGTTAGGCTTTaagtttttcatgtttttatttcttaatatgtTTAGTTGAACAGTGAGATACATTTTGGGCATGTCTCGCATTTGTAAGAAGAAACCTGCTGTGTGCACAGATGAGCCACTTTCCAACAGTACCATCTGCCAAAAGATGGCTCTGTTGAGAAATATATTCTGTACTGCCTACGGACCTACTGGCAGACTGAAACAAATACACAACCATATTGGAGGCCATGTCTTGACGACGTCAACCTCTTCAGCCCTGCTCAAACGAGTGGATATGTCTGAGCCGCTTCTCAAAATGATCTCAACTGCTGTTCAACATCACACTGCACGGTACAGTGACTCTGGGCTGTTTATGGGGATTTTGATGCTCAGACTTATCGAAAATACTCAAAAATATAACCTCAGGACAGCTGCAGCAGCCAAGGTATACAAACACATTGTGGAAGAATGCAATGTGTATCTTAAAGGAGACTCTTGTGGTTGCAAGGTGCCAGTAGACTTCAGCAGATGTGATTCATTCATTGCACTGGCCCGCAGCATGATCGCCAGCAAACCAGCCTGTATGTTGAATAGCAAGGAAGCACAGCATATCAGTTCACTGATCGCGCAGGCCTTCTTGTATTCCATCCCTTGCAACTCTTCCGGTGTGACCTGCTTTGGCAGGACAGTCACCATCGGCATCGAGGGCCTGTCTGTGAGTGATTCTTCTATTTTCCCAGGACTGCTGGTGGATGTCCCTGAGTTAATGGATCTTAAGAGACTGGGATCTGGTCCATTTAAGGCAGTGGTTTTCAATGTGTCATTGTCAGGCGATATCTCTGAGTTTGAGGATGTGGTTTTGGAGATCCATAGGGGAGTGGACCCAGAGCGTGATCTCCTTCTGCTGCTCCTGAAACTTGGGGAACAAGTTGTTAAGGACAAAGTGAGATTATTTGCATGCCAAAAAGTAGTACATCCTATTCTGCAACACTACTTGAGGAAACACGGAGTGATCGTCATAGAGAGGCTTGGACTAGCTCTGATCGAACCATTTGTCCAAATAACAGgTGCTCAGGCTGTTGCTTCTCTTTACTCTTCAGTCCCGGCGGAAGCTTACGGGATTGTTAAAGGACTCTGTTTCCAGTCATGTGGATCCAGAGAGCTGCTCCAGCTCCTTCCTTCTAAAGATGCTGCTGTTAGCACAATGGTTCTCTGCCACAGAAATGAAACCATGCTGGAAGAACTGAAGATGACATGCCAAAGAGCAGAACATGTGTTGCGACTGACTCTGAGGGAGCCCTACGCCCTGCTAGGAGGAGGCTGCACAGAGACGCTGCTGGCCACCCACATCACACACATGAATCAATCCAAAGCCGCAACAATAGCTGCAGCTCTGTGCATCTCTCAGTCTGAGTTCCTCATGGCAATCAAGGCGTTCTGCAGCTCTCTGCAATCCGTGGCTCTTTCCTTAGAGCATGATGGACAGGACTGTCTCATTGACTTGACATATGCTCATCGCTGGGTGTCAGATACATACTCCAAAACCTGTGGCTGTGGCCTGGTGGAGGACAGATCCGACCTGGAGAAGACCCTTCTAAATACAGCTTGCCACACTTTCTCTCCTGTTTCCCTGGAACACACTGACAATCAGCCAAGAATATTAGATTCATTTTCTGCCAAGCTCAATGCTTTGAATGTGGCCGTCGAGATGGCTAATTTTGTTCttgatgtaaaatatataattaaggATATCAATTAAATTGTGATGAATGAAGAGCTGTGCTTTGAATAAAGGGTGTAGGtttgatgtattttataatCAAA

Function

GO:

id name namespace
GO:0043010 camera-type eye development biological_process
GO:0046907 intracellular transport biological_process
GO:0032402 melanosome transport biological_process
GO:0048839 inner ear development biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0051877 pigment granule aggregation in cell center biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0001947 heart looping biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005524 ATP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138376 lncRNA upstream 211055 13346861 ~ 13348038 (+) True G93512
TU138346 lncRNA upstream 367298 13187585 ~ 13191795 (+) True G93485
TU138317 lncRNA upstream 394780 13164037 ~ 13164313 (+) True G93474
TU138293 lncRNA upstream 400655 13156930 ~ 13158438 (+) False tasp1
TU138058 lncRNA upstream 956552 12602191 ~ 12602541 (+) True G93306
TU138576 lncRNA downstream 196231 13759556 ~ 13760734 (+) False LOC122356417
TU138574 lncRNA downstream 197727 13761052 ~ 13930287 (+) True G93643
TU138585 lncRNA downstream 298726 13862051 ~ 13862660 (+) True G93649
TU138606 lncRNA downstream 382005 13945330 ~ 13950605 (+) True G93659
TU138607 lncRNA downstream 382005 13945330 ~ 13950605 (+) False G93659
XM_043255047.1 mRNA upstream 37963 13493819 ~ 13521130 (+) True jag1b
XM_043255071.1 mRNA upstream 400653 13134473 ~ 13158440 (+) True tasp1
XM_043255070.1 mRNA upstream 484594 12613777 ~ 13074499 (+) False macrod2
XM_043255069.1 mRNA upstream 484594 12613778 ~ 13074499 (+) True macrod2
XM_043255067.1 mRNA upstream 949056 12605843 ~ 12610037 (+) True ephx5
XM_043255050.1 mRNA downstream 17901 13581226 ~ 13617273 (+) True wdr27
XM_043255048.1 mRNA downstream 63273 13626598 ~ 13645581 (+) True thbs2a
XM_043255038.1 mRNA downstream 87583 13650908 ~ 13675048 (+) True psme4a
XM_043255040.1 mRNA downstream 87583 13650908 ~ 13675048 (+) False psme4a
XM_043255039.1 mRNA downstream 87583 13650908 ~ 13675048 (+) False psme4a
XR_006252431.1 other upstream 342336 13216658 ~ 13216757 (+) True LOC122357146
XR_006252318.1 other upstream 970240 12586886 ~ 12588853 (+) False mgme1
TU138047 other upstream 983881 12571631 ~ 12575212 (+) True G93296
TU137630 other upstream 1954241 11603697 ~ 11604852 (+) True G92977
TU138522 other downstream 176282 13739607 ~ 13909603 (+) True G93613
XR_006252357.1 other downstream 790791 14354116 ~ 14367135 (+) False frmd6
XR_006252421.1 other downstream 1543133 15106458 ~ 15226183 (+) True LOC122357077
XR_006252370.1 other downstream 1691749 15255074 ~ 15275234 (+) False fam135a
XR_006252400.1 other downstream 1732524 15295849 ~ 15314279 (+) False tarbp1

Expression Profile