RNA id: XM_043255076.1



Basic Information


Item Value
RNA id XM_043255076.1
length 1475
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC122356401
representative True

Chromosome Information


Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 13852587 ~ 13858805 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TCTCGCGCGCTCTCCAGTTAGCTCCATGCGATGAGACGGATCCTCTGCTACTAACCGCGCAAGGGAAAAAAGaGGATATAGCGGAGACTGGGGACGTCAAGACTGCATGATAAGGATGGGAATTGTTCAAGTGCTAAAAACTCAGTTGCTGTGCCATCTCATTATCTGTTACGTGTTCCTAGTCAGTGGATTCATTATCAACCTGCTGCAGCTCTGTACTCTACCACTGTGGCCCTTTAACAAGCAGCTCGCACGCAAGATCAACTGCAGATTGGGTTATTCCATTTCTAGCCaACTGGTGGCATTGTTGGAGTGGTGGTCTGGGACAGAATGCACACTTTACACAGATCCAGAAAGCTATAAACTTTATGGCAAAGAGAATGCCATTGTTGTCCTTAATCATAATTTTGAGATCGATTTCATGACAGGCTGGACCTTCTGTGAGAGATTTGGCGTTTTAGGAAGCTCAAAGGTGTTGGCAAAAAAGGAACTTTCCTTTGTTCCTGTGATCGGCTGGATGTGGTACTTCCTAGAGATCGTCTTCTGCAAGAGGAAATGGGAAGAGGATCGCAAGACAGTAGTGCAAAGTCTGCACAACCTTCGGGATTACCCAGAAAACTTTTGGTTCCTGTTGCACTGTGAGGGCACACGCTTCACAGAAAAGAAGCACAAGATTAGTATGGAGGTGGCAGAGAAGAAAGGTCTCCCCAAACTCAAGTACCACCTTCTACCTCGGACCAAGGGCTTTTGTGTCACGGTCCAGAACCTCAGGGGAACGGTTACTGCTGTGTACGATTCTACACTTAATTTCAGAAACAACGAAATGCCAACTTTACTAGGGGTACTCAACGGGAAAAAGTACCATGCTGATTTATATGTGAGGCGAATTCCTCTGGACACGATCCCAGAGGACGAGTCTGAATGTGCCGTCTGGCTTCACAAACTCTACCAGGAAAAAGATGAATTCCAAGAGCATTATAGACAGACAGGGCGTTTTCCGGGTCCCATTACAAGCCCTCCGCGTCGACCTTGGTCCCTGCTGAACTGGCTCTTCTGGGTTTGTTTGCTGGTCTACCCTCTCTGCATGTTACTTCTGCAGTTGCTGCTATCAGGATCCACCTTCACTGTCGTCTGTACATCGCTCTTCTGTCTAGCAGcagACCGTATAGGTGCTAGAGCAtgtcagTTGGTATCCGCTGGATGATCGGACAGACTGAAATTGACAAGGGTTCCAACTACGGAAATAAAGAGATGCAAATGAACAACAACTGAAACATCTACCGGGGCGACAAGATCAAGCTACTGAACGGTCGTGAGGGCATTTTCACAACAGAAACTGGCATTAGCCAAGTGAAACCTCTTTCATGAATGAAACTCGAGGAAGTTGCCACATAAAGAGTcgtttgaataatttaaaaacacttttctgttttgatttacatgtcaaggcttttttttttttttttttttttttt

Function


GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG:

id description
K13523 AGPAT3_4; lysophosphatidic acid acyltransferase / lysophosphatidylinositol acyltransferase

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU138576 lncRNA upstream 91853 13759556 ~ 13760734 (+) False LOC122356417
TU138376 lncRNA upstream 504549 13346861 ~ 13348038 (+) True G93512
TU138346 lncRNA upstream 660792 13187585 ~ 13191795 (+) True G93485
TU138317 lncRNA upstream 688274 13164037 ~ 13164313 (+) True G93474
TU138293 lncRNA upstream 694149 13156930 ~ 13158438 (+) False tasp1
TU138585 lncRNA downstream 3246 13862051 ~ 13862660 (+) True G93649
TU138606 lncRNA downstream 86525 13945330 ~ 13950605 (+) True G93659
TU138607 lncRNA downstream 86525 13945330 ~ 13950605 (+) False G93659
TU138598 lncRNA downstream 87372 13946177 ~ 13950605 (+) False G93659
TU138603 lncRNA downstream 87372 13946177 ~ 13950605 (+) False G93659
XM_043255899.1 mRNA upstream 51348 13798911 ~ 13801239 (+) True LOC122356827
XM_043255096.1 mRNA upstream 92165 13749135 ~ 13760422 (+) True LOC122356417
XM_043255085.1 mRNA upstream 125563 13721418 ~ 13727024 (+) True kcnk1b
XM_043255897.1 mRNA upstream 160238 13686039 ~ 13692349 (+) True agpat4
XM_043255059.1 mRNA upstream 173955 13675767 ~ 13678632 (+) False gpr75
XM_043255520.1 mRNA downstream 59393 13918198 ~ 13929237 (+) False mfsd2aa
XM_043255521.1 mRNA downstream 59638 13918443 ~ 13929237 (+) True mfsd2aa
XM_043255518.1 mRNA downstream 71818 13930623 ~ 13936869 (+) False si:ch211-67f13.7
XM_043255517.1 mRNA downstream 71820 13930625 ~ 13936869 (+) True si:ch211-67f13.7
XM_043255519.1 mRNA downstream 72213 13931018 ~ 13936869 (+) False si:ch211-67f13.7
XR_006252431.1 other upstream 635830 13216658 ~ 13216757 (+) True LOC122357146
XR_006252318.1 other upstream 1263734 12586886 ~ 12588853 (+) False mgme1
TU138047 other upstream 1277375 12571631 ~ 12575212 (+) True G93296
TU137630 other upstream 2247735 11603697 ~ 11604852 (+) True G92977
XR_006252357.1 other downstream 495311 14354116 ~ 14367135 (+) False frmd6
XR_006252421.1 other downstream 1247653 15106458 ~ 15226183 (+) True LOC122357077
XR_006252370.1 other downstream 1396269 15255074 ~ 15275234 (+) False fam135a
XR_006252400.1 other downstream 1437044 15295849 ~ 15314279 (+) False tarbp1
XR_006252368.1 other downstream 2006034 15864839 ~ 15870625 (+) False hps1

Expression Profile