RNA id: XM_043255084.1


Basic Information

Item Value
RNA id XM_043255084.1
length 1177
RNA type mRNA
GC content 0.45
exon number 4
gene id mgme1
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 12586886 ~ 12588998 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCCAGTAGATCCAGTTCAAATTGCGGTCCATTTGAAATACCGGAATGTAACAACCGCATGATGGCTCACGTTAATCCACTCCTAAGctgtttggtttgtttattttaatttatatgtcCGTTTTCCAAAGCATAGGCAAATAGCCGTAACAATTACTACAGAAGCAGGATAAGGACACCACTTATGGCGATGACAATGCAATTATTGAAGCTGGTGATTCAACGCAAGTGTGTGAGATCAATGGGCTTCCCCTCTGGTCAGTTCTCGCGTGTGGACAACTTTTCAGCCAGCTGTCAATGGCGAGCACGCAAAAAGGTCAGTCAGTACAGCACAGTGGACACAGAGCGGTACTCATCTCTGGTACGAGAGGTGTTGTCGTTAAAAATCAGCTCCCAGACTCCTGAAAGCATCGAGGACGAAGACTACGAGCTGTACGGACCTATAATAAGATCCAGACCGCCTTCACAACAGTCCAAAGCACCTAAAAACCTGCATCCACTGTTAAATGAAGCCAAAGGTCAGTCGGAGTATGTTCCGGGACCTTTGGCTCGTATAACATTACAGAGAGACTCTAATAACACATCTATACCCAGTGTGACCCGAATTCTTCAGAACACCATGCCTCCTGACCAAGCCTTTTACCTGGAAAGGTGGAAGAGAAGGATGATTGCTGAACTCGGAGAGGAAGGGTTTCGAGAATACAGCTCGAACCTTTTCAGACAAGGAAAGTTGTTCCATGCTGCTATTGAGGACACTTTTACTCAGGATACCCCTGCTAAGGAGGACCATGAATGTCCAGAGGAGGTGTCTGGATATATAGAGAGTGTATCTAATGTGTTGAATGATATAACAGGAGTGAGAGCTATTGAGAGTGTTGTGCATCATTCTGCATTACGTTACCTTGGCATTGTAGATTGTGTTGCAGAATACAGAGGTTCACTGTGTGTCATTGATTGGAAGACCTCAGAAAAGCCTAAGCCCTTCCTTCACCAAACTTACGACAATCCATTACAAGTAGCTGCGTACATTGGAGCTTTGAACTGTGACCACAACTACAACTACCAGaTTCGCTGCTCTGCATCATATTTGTCAACCTAATGAAATGCAAGATGACATACAAGTATGGGGCCTGGGCCAGTTAGAGTCAGTAAGAGAAATGGACATATTCAGCATGTA

Function

GO:

id name namespace
GO:0043504 mitochondrial DNA repair biological_process
GO:0005739 mitochondrion cellular_component
GO:0008297 single-stranded DNA exodeoxyribonuclease activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138044 lncRNA upstream 17786 12568484 ~ 12569100 (+) True G93295
TU138036 lncRNA upstream 51822 12533985 ~ 12535064 (+) False jag2a
TU138024 lncRNA upstream 136440 12448374 ~ 12450446 (+) True G93280
TU137947 lncRNA upstream 150243 12431949 ~ 12436643 (+) False LOC122357045
TU138003 lncRNA upstream 201268 12385307 ~ 12385618 (+) True G93267
TU138033 lncRNA downstream 7591 12595922 ~ 12597301 (+) True G93285
TU138058 lncRNA downstream 13860 12602191 ~ 12602541 (+) True G93306
TU138293 lncRNA downstream 568599 13156930 ~ 13158438 (+) False tasp1
TU138317 lncRNA downstream 575706 13164037 ~ 13164313 (+) True G93474
TU138346 lncRNA downstream 599254 13187585 ~ 13191795 (+) True G93485
XM_043255091.1 mRNA upstream 27368 12557143 ~ 12559518 (+) False cfl1l
XM_043255090.1 mRNA upstream 27368 12557148 ~ 12559518 (+) True cfl1l
XM_043255045.1 mRNA upstream 51815 12502385 ~ 12535071 (+) True jag2a
XM_043255046.1 mRNA upstream 51815 12502385 ~ 12535071 (+) False jag2a
XM_043256343.1 mRNA upstream 93147 12488581 ~ 12493739 (+) True LOC122357113
XM_043255067.1 mRNA downstream 17512 12605843 ~ 12610037 (+) True ephx5
XM_043255070.1 mRNA downstream 25446 12613777 ~ 13074499 (+) False macrod2
XM_043255069.1 mRNA downstream 25447 12613778 ~ 13074499 (+) True macrod2
XM_043255071.1 mRNA downstream 546142 13134473 ~ 13158440 (+) True tasp1
XM_043255047.1 mRNA downstream 905488 13493819 ~ 13521130 (+) True jag1b
TU138047 other upstream 11674 12571631 ~ 12575212 (+) True G93296
TU137630 other upstream 982034 11603697 ~ 11604852 (+) True G92977
TU137635 other upstream 982662 11603697 ~ 11604224 (+) False G92977
TU137640 other upstream 1009027 11571660 ~ 11577859 (+) False lrrc9
TU137330 other upstream 1368711 11215492 ~ 11218175 (+) True G92772
XR_006252431.1 other downstream 628327 13216658 ~ 13216757 (+) True LOC122357146
TU138522 other downstream 1151276 13739607 ~ 13909603 (+) True G93613
XR_006252357.1 other downstream 1765785 14354116 ~ 14367135 (+) False frmd6
XR_006252421.1 other downstream 2518127 15106458 ~ 15226183 (+) True LOC122357077
XR_006252370.1 other downstream 2666743 15255074 ~ 15275234 (+) False fam135a

Expression Profile