RNA id: XM_043255090.1


Basic Information

Item Value
RNA id XM_043255090.1
length 1071
RNA type mRNA
GC content 0.42
exon number 4
gene id cfl1l
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 12557143 ~ 12559518 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATCTGACTCACCTGAGCGTTTACATGACATAAAGCATCACTTTTATGGCTTCCTTATCATAAacgcaaaatataaataattgggCGATGACAGGATATTTAACACAGCCACCCCGTAGTTAGAAGTGTTTGCAGCAACGCAGCCAGCAGGTAGAGAGCCGGGTCATCGGGGACTGGTCTGTTCTGAAGAGGGTGGGTTTAGATCCGCGCCCCTGAGACTCTTCTTCACTCTGCAAGGCAACGACGTGCTTCTTTCCTCCGTTTCAGAGCAAGCGTGAGCCATGGCCTCAGGTGTAGCCATCAGTGATGAGGTGATAAGTAAGTATGACTTAATCCGGGTGCGTCATGCAGGAACTGATGCTGGGGAAAGGCTAAAACTTCTGGTCATGTGTTTGAGCAAAGACCAAAAGAGTATCGTGGTGGACCATGACAACTGCCTGACAGTCAAAGATGTGGGGACCACAGATGTCTTAAAGAAGATCCTCGATAAGTTTCCTCCCAAAGATTGCCGCTACGGCCTGTACGACTGCTCCTATGTGAACAAGGAGAGCGTGAAGGAGGACCTGGTCTTCATCTTATCGGCCCCTGAATCTGCCCCATTAAAGAGCAAAATGGTCTATGCAAGTTCAATGGTTGCTCTTAAGAACAAACTGCAAGGTTTGAAATATGAGTGGCAAATTAATGAACCTGGAGACAGAGACCCATCATGCCTTGTGGAGAAACTTGGTGGAAGGGACACAGTAAAGTCTTTGGAGGGGCAGCTTGTGTAAAATTAAGAGCAATCAGACCAATGACCCCACAGCCCTCTTATCAGTCtgttatgacaaaaaaaaaaaataaataaataagagataaaatatatgctaataaactttgtatttcatttgtattggaatcagttttttttttacatttaatcaattgAGAATTCGTATTTATTCCACATTTAcaattaatgattattattaagcaAATACCAACAAATATAGTATAATGACAGCAGAAAACCTGGGGTAGGCATTACAATTGGACTgtgtatttgaaaaataaaatcatgtgaTTTTCCAAAAA

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138036 lncRNA upstream 22084 12533985 ~ 12535064 (+) False jag2a
TU138024 lncRNA upstream 106702 12448374 ~ 12450446 (+) True G93280
TU137947 lncRNA upstream 120505 12431949 ~ 12436643 (+) False LOC122357045
TU138003 lncRNA upstream 171530 12385307 ~ 12385618 (+) True G93267
TU137945 lncRNA upstream 176297 12379709 ~ 12380851 (+) True G93219
TU138044 lncRNA downstream 8966 12568484 ~ 12569100 (+) True G93295
TU138033 lncRNA downstream 36404 12595922 ~ 12597301 (+) True G93285
TU138058 lncRNA downstream 42673 12602191 ~ 12602541 (+) True G93306
TU138293 lncRNA downstream 597412 13156930 ~ 13158438 (+) False tasp1
TU138317 lncRNA downstream 604519 13164037 ~ 13164313 (+) True G93474
XM_043255045.1 mRNA upstream 22077 12502385 ~ 12535071 (+) True jag2a
XM_043255046.1 mRNA upstream 22077 12502385 ~ 12535071 (+) False jag2a
XM_043256343.1 mRNA upstream 63409 12488581 ~ 12493739 (+) True LOC122357113
XM_043256344.1 mRNA upstream 63409 12488770 ~ 12493739 (+) False LOC122357113
XM_043255843.1 mRNA upstream 71486 12451643 ~ 12485662 (+) False brf1a
XM_043255084.1 mRNA downstream 27368 12586886 ~ 12588331 (+) False mgme1
XM_043255083.1 mRNA downstream 27369 12586887 ~ 12588998 (+) True mgme1
XM_043255067.1 mRNA downstream 46325 12605843 ~ 12610037 (+) True ephx5
XM_043255070.1 mRNA downstream 54259 12613777 ~ 13074499 (+) False macrod2
XM_043255069.1 mRNA downstream 54260 12613778 ~ 13074499 (+) True macrod2
TU137630 other upstream 952296 11603697 ~ 11604852 (+) True G92977
TU137635 other upstream 952924 11603697 ~ 11604224 (+) False G92977
TU137640 other upstream 979289 11571660 ~ 11577859 (+) False lrrc9
TU137330 other upstream 1338973 11215492 ~ 11218175 (+) True G92772
TU137332 other upstream 1342061 11213526 ~ 11215087 (+) False G92772
TU138047 other downstream 12113 12571631 ~ 12575212 (+) True G93296
XR_006252318.1 other downstream 27368 12586886 ~ 12588853 (+) False mgme1
XR_006252431.1 other downstream 657140 13216658 ~ 13216757 (+) True LOC122357146
TU138522 other downstream 1180089 13739607 ~ 13909603 (+) True G93613
XR_006252357.1 other downstream 1794598 14354116 ~ 14367135 (+) False frmd6

Expression Profile