RNA id: XM_043255116.1


Basic Information

Item Value
RNA id XM_043255116.1
length 4940
RNA type mRNA
GC content 0.49
exon number 33
gene id abcc2
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 2199984 ~ 2217020 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCCTCACATGTACATGACCATGGTGAACCTGGACTTTAGACCGTTGTGATGGAAGAAACATGTCTGCTGCTCTAGAAGAATACTGCGGCTCCATTTTCTGGaatgcCTCGTACCTGCAGCGTCCGGACCCGGACCTGCCCATCTGTGTGGAGAGAACGGTGCTGGTGTGGCTTCCCTTAGCGTTCCTGTGGCTCTGTGCTCCGTGGCACTTCAGAAGTCTCTGTAAGAAACCGGCCAAAGCTACGCTCTCTAAACTCTACATCAGCAAACAGGTAGTGGCTGGCCTGCTGCTCCTGACGGCGATAGCAGAGCTAGCGCTCACTCTCGGAGAGGATTATGGGCCGTCAAGTGACTCCACGGCTCAGAAACATCCAGCGGTGCTCTACACCAATCCGGTCCTGTTCACCATCTCATGGgtggtcGTGATGCTGTGTCAGGAGTGTATGCGGCGCAAGCCGAGAACCGTCGACTCCGGCAGTCTCTTCGTGTTCTGGCTGCTTCAGGTGGTGTGCGCCGTCTTCCAGTTCCAGACTCTACTGAGAGACGCACTGAAGCAGGAAGAAATCGATGATTTTCCACGGTTCTGTCTTTTCTACATCGGCTATGGCCTGCAGCTGATCGCTTTTGTCTTATCAGCTTTGCCTGACGTTTCAcctgaaatgaaaagaattgCAAAGACGAATCCTGAAGCCAAAGCGACGTTTCTGAGCAGAATCACCTTTAACTGGTTCAACAGCATGGTGATCAAAGGCTTTAAGAGGCCTCTGGTTCAGGAGGACATGTGGGATCTGAATCAGAAGGACTCCACTCACACCATCTGTGAGGAGTTTGAGGACATCATGGCGAAAGAGCTGAAAAAAGCCCACAGGAACCTGCAGAAGAAACAACATAAACGAAAGACTAAAAGTGATCATCAGAATGGCTTGGCCAAAGGAGTCAGTCAGGATGTTCTAGTTATGGAGGAGAcaggaaagaagaaagaaaagaagaagaaaaaggattCTGAATCTGACTATCCTCAGTCCTGGCTGGTTACCAGCATTGTTAAAACCTTCAAAGGTGTGCTTTTTGAATCAGCCGCCTACAAACTGATACAAGACCTTCTAGCATTTGCAAGCCCTCAGCTTCTCAAGTTAATGATCTCCTTCACTCAGGACAAAACGAGTTACGCGTGGACTGGTTACCTGTATGCCGTGCTGCTTTTGCTGGTGGCTTTTTTACAGTCAGTTTTTCTTCAGCAGTATTTCCAGCGATGCTTTATCTTGGGTATGAAAGTACGCACCGCCCTCATGGCTGCTATTTATAAGAAGGCGTTAGTCGTGTCTAACGACTCCAGGAAAGAGTCGACCGCCGGAGAGATAGTCAACCTGATGTCAGCGGACGCCCAGAGATTTAACGACGTCACCAACTTCATCCATCTGCTGTGGTCGTGTCCGCTGCAGATCGCTCTGTCCATCGCCTTCCTCTGGATTGAGCTGGGTCCCTCTGTCCTGGCCGGGCTGCTGGTCATGGTGCTGTTGGTGCCCATCAATGGCTGGCTGGCCACCAAATCCAGGGGCTTCCAGGTGGAAAACATGAAATTTAAAGACACTCGCATGAAAATCGTGAATGACATACTAAATGGAATAAAAGTTCTGAAGTATTATGCATGGGAATCGTCTTTCGAGGCTCAGGTTCAGGACATTCGAGAGAAGGAGCTGAAGGTGATGAAGAAGTTTGCCTACCTCTCATCGGTCTCCGTCTTCATATTTTCATGTGCTCCAGCTATTGTGTCTCTGGCGACCTTcgctgtgtttgtgtctgtgagtcCTGATAACATTCTGGACGCAGAGAAAGCTTTTACCTCCATCTCACTCTTTAACATCCTGCGCTTCCCGCTAGCCATGCTTCCACAGCTGATCTCCATCATGGTTCAGACCAGTGTGTCTAAGAAAAGGCTTGAGAAATTTCTGAGTGGTGATGATCTGGATACAATGGCAGTAACGCGTGACGACAGCCACAGTGCCGCCGTGAGCATGACTGATGGGACATATGCCTGGGAAAGACAGGCAGATCCAGTTCTGAAGAACGTCTCTCTGGACATTAAACCGGGTCGTCTGGTGGCAGTGGTCGGGGCTGTAGGGTCTGGAAAGACATCGCTGATATCTGCTCTGCTGGGAGAACTGCACAGCACCAAGGGTCAAATTAATATCAAAGGGTCTGTAGCGTATGTGCCGCAGCAGGCCTGGATTCAGAACGCCACTCTGAAGGACAACATCTTATTCGGCTCTAGTCTGGATGAGGAGCGTTACCTGTCTGTGGTGGACTCGTGTGCGCTCGGACCGGACCTCGAGCTCCTGCCAGGAAGAGACCAAACTGAGATCGGAGAGAAGGGCATCAATCTGAGCGGAGGACAGAAACAGCGGGTGAGCCTGGCCAGAGCGGTCTACAGCTCCGCAGACGTGTATCTTCTGGATGACCCACTGTCTGCCGTAGACTCACATGTGGGCAAACATCTGTTTGAGAAGGTGATCGGACCCAAAGGACTGCTCAAAAACAAGaCTCGTATTCTGGTAACACATGGGATCAGCTTCTTGCCGTATGTAGATGAGATTATTGTATTGGTGAATGGGGTGGTGTCCGAGGTAGGATCATACAAGGGTCTTCGAGCCAGTAAAGGAGCTTTCTCTGAATTCCTGGAAACGTACGGCAAAGAAGAAAGCAGCAATGCTGATTCCAGAAAAGCATCAGCTCAGGAGTCAGAGTACGAGAAGATTGAAACGCTGCCGGAGGGTTTGGAGCCACAGGCCGATGACTCTCCTGAGGACATTGTCTCAAGCACACTGAAGAGAGAAAACAGCCTCCGTCACAGCCAGCGGCACAGCAAACCAAACGGAAGTGTGAGAGTGAGGAAAAACAGCTCCGTTCGATCCAAAAAGGACTCAGACGATAAGAAGGGACAGCGACTGATTGAGAAAGAGGCGATGGAGACGGGAAGGGTGAAATTCTCAGTGTATCTTCAGTATCTGAGGTCTATGGGCTGGTGTTTTGTCTCCTGGAGTTTCGTGTTCTACTTCATCCAGAATGTGGCCGTCATTGGTCAAAACTTGTGGCTCAGTGACTGGACCGAGGATTCTGTAGAATATTTCAACACAACCTACCCAGCTCATATCAGAGACATGAGAATAGGTGTCTTCGGAGCCCTGGGATTGGCACAAGGTTTTCTGGTGTTTTTTGGCACTATACTCCTAGCTGACGGATCCATTTCTGCGTCCAGGACTCTACACACAAACCTGCTGTCTAATATTCTCAAAGTACCCATGATGTTCTTTGATACCACACCTTCAGGACGAATAGTCAATCGCTTTGCCAAGGATATGTTTACAGTAGATGACATGATCCCGATGTCCTTCAGATCCTGGTTTCTCTGTCTTCTTGGAGTTCTAGGGACCTTGTTCGTTATCTGTCTGGCTACTCCAATCTTCACCGCAGTTGTTGTCCCCATGGCTGTTGTCTACTACTTTGTCCAGAGGTTCTATGTTGCTACATCCAGGCAACTCAGGCGACTGGACTCTGTTTCTCGATCTCCCATATACTCACACTTTGGAGAAACCGTATCGGGCCTCTCTGTGATAAGGGCATATGGCCATCAGCAACGTTTCTTAAAGGAAAATGAGGACACCATCGATCAGAATCTCAAAAGTGTCTATCCTTGGATTGTTTCTAACAGGTGGCTGGCCATGCGCTTGGAGTCTTTGGGGAACCTGGTGGTGTTTTTCGCAGCTTTGTTTGCTGTGATCTCTCGGGACTCTTTGAATAGTGGATTGGTTGGACTGTCCATCTCTTACGCCTTAAATGTGACTCAAACTCTGAACTGGCTCGTGAGAATGACGTCAGAACTGGAGACCAACATTGTTGCTGTGGAAAGAGTGAGGGAGTACACAGAGATCACAAATGAGGCTCCATGGATCACCAGTAATCGTCCTCCAGATGACTGGCCCAATGCTGGGAATATTCGTTTTGATAACTATAAAGTTCGATACCGACCAGAACTGGATCTCATTCTCCACGGCATCACGTGTGACATTACAAGCACTGAGAAAATTGGGATCGTTGGTCGAACTGGTGCCGGCAAATCCAGTCTGACTAACTGCTTGTTTCGCATTATTGAAGCTAGTGAAGGTCGGATCCTCATCGATGGTGTTGACATCTCCACCCTGGGCCTTCATGATCTCAGGAGCAGACTAACCATCATCCCACAGGACCCGGTACTGTTCTCTGGCACTCTGCGGATGAACCTGGACCCATTCAAGAAGTCCAGCGATGAGGAGATCTGGAACGTTCTGGAGCTGGCTCATCTCAAAGATTACGTGAGGGGTTTACCAACAGGACTTCAGCACGAGGTCTCCGAGGGAGGAGAGAATCTGAGTGTTGGTCAGAGGCAGCTGCTGTGTCTCGCCCGGGCCTTGCTCAGGAAATCCCGTATCCTGATCCTGGATGAAGCCACCGCTGCCGTGGATCTGGAGACCGACGACCTCATCCAGAACACCATCCGCAGGGAGTTCTCACACTGCACCGTGCTGACCATCGCACACAGACTCAACACCATTTTAGACAGTTCACGgGTAATGGTCCTGGACTCTGGTAAAATCGTGGAGTTTGATTCGCCGAGCGTACTGCTTAATAACAAACAGGGACATTTCTATGCTATGGCTAAAGACGCAGGCATCAGAGGAGGAGAAACGAGTCCACCTGAGAATATGTCTACTGACCTGTGATGATGTTTGAcgcttttctgtttcttttcaaTCTTTTGCTGGAGGACTTTTTGACTTGAGGACCTGAAAAGGAAATGTTAAgcagttatattattatttctctataatcctgttgttttttttgttaatatgttGACATGGATTTATATGTTGTGGCAATAAAGTTTATaaaattttgcata

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133390 lncRNA upstream 124156 2075552 ~ 2075828 (+) True G90094
TU133376 lncRNA upstream 146138 2053597 ~ 2053846 (+) True G90089
TU133375 lncRNA upstream 147679 2052035 ~ 2052305 (+) True G90088
TU133308 lncRNA upstream 164147 2035337 ~ 2035837 (+) True G90041
TU133297 lncRNA upstream 165417 2017183 ~ 2034567 (+) True G90034
XR_006252343.1 lncRNA downstream 21922 2238942 ~ 2240047 (+) True LOC122356498
TU133438 lncRNA downstream 47726 2264746 ~ 2284358 (+) False LOC122356772
TU133534 lncRNA downstream 68505 2285525 ~ 2286244 (+) True G90206
XR_006252340.1 lncRNA downstream 86465 2303485 ~ 2304076 (+) True LOC122356495
XR_006252325.1 lncRNA downstream 92861 2309881 ~ 2311135 (+) True LOC122356488
XM_043255193.1 mRNA upstream 4797 2186258 ~ 2195187 (+) True LOC122356458
XM_043255194.1 mRNA upstream 4797 2186350 ~ 2195187 (+) False LOC122356458
XM_043255824.1 mRNA upstream 19155 2176009 ~ 2180829 (+) True cutc
XM_043255219.1 mRNA upstream 24551 2166620 ~ 2175433 (+) True LOC122356476
XM_043255140.1 mRNA upstream 33956 2153424 ~ 2166028 (+) False tp53bp2a
XM_043255200.1 mRNA downstream 851 2217871 ~ 2224453 (+) True LOC122356461
XM_043255201.1 mRNA downstream 868 2217888 ~ 2224453 (+) False LOC122356461
XM_043255825.1 mRNA downstream 65742 2282762 ~ 2284807 (+) True LOC122356772
XM_043255121.1 mRNA downstream 97486 2314506 ~ 2424731 (+) False nrxn1b
XM_043255118.1 mRNA downstream 97489 2314509 ~ 2424731 (+) True nrxn1b
TU133396 other upstream 19245 2176153 ~ 2180739 (+) False cutc
XR_006252324.1 other upstream 33956 2153422 ~ 2166028 (+) True tp53bp2a
TU133255 other upstream 327393 1872184 ~ 1872591 (+) True G90010
TU133244 other upstream 357876 1840335 ~ 1842108 (+) False mpc1
TU133118 other upstream 597293 1581358 ~ 1602691 (+) False LOC122356486
TU133574 other downstream 252925 2469945 ~ 2470381 (+) True G90230
TU133786 other downstream 765539 2982559 ~ 2984609 (+) False LOC122356072
TU133784 other downstream 765723 2982743 ~ 2984609 (+) False LOC122356072
TU133808 other downstream 834962 3051982 ~ 3055118 (+) False LOC122356070
TU133807 other downstream 836554 3053574 ~ 3055118 (+) False LOC122356070

Expression Profile